data_7SLY # _model_server_result.job_id pZ8vYVA07xzuP-lg3TTZ9Q _model_server_result.datetime_utc '2025-07-07 23:13:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7sly # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":503}' # _entry.id 7SLY # _exptl.entry_id 7SLY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7SLY _cell.length_a 64.98 _cell.length_b 110.973 _cell.length_c 147.885 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7SLY _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 F N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 4 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 5 ? 3 4 3 BMA BMA C1 O1 . O6 HO6 . sing 6 ? 3 5 4 BMA BMA C1 O1 . O3 HO3 . sing 7 ? 3 6 3 BMA BMA C1 O1 . O3 HO3 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG B 640 NAG 2 n B NAG 2 B 2 NAG B 641 NAG 2 n B BMA 3 B 3 BMA B 642 BMA 3 n C NAG 1 D 1 NAG D 640 NAG 3 n C NAG 2 D 2 NAG D 641 NAG 3 n C BMA 3 D 3 BMA D 642 BMA 3 n C BMA 4 D 4 BMA D 644 BMA 3 n C BMA 5 D 5 BMA D 645 BMA 3 n C BMA 6 D 6 BMA D 643 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 108 A CYS 88 1_555 A SG CYS 125 A CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf2 A SG CYS 144 A CYS 124 1_555 A SG CYS 151 A CYS 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 A SG CYS 356 A CYS 336 1_555 A SG CYS 361 A CYS 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf4 A SG CYS 362 A CYS 342 1_555 A SG CYS 397 A CYS 377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf5 A SG CYS 402 A CYS 382 1_555 A SG CYS 410 A CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? covale ? covale1 A ND2 ASN 129 A ASN 109 1_555 D C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale2 A ND2 ASN 199 A ASN 179 1_555 C C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.428 ? covale ? covale3 A ND2 ASN 314 A ASN 294 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.428 ? covale ? covale4 A ND2 ASN 352 A ASN 332 1_555 F C1 NAG . A NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale5 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.409 ? covale ? covale6 B O4 NAG . B NAG 2 1_555 B C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.409 ? covale ? covale7 C O4 NAG . D NAG 1 1_555 C C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.385 ? covale ? covale8 C O4 NAG . D NAG 2 1_555 C C1 BMA . D BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.392 ? covale ? covale9 C O6 BMA . D BMA 3 1_555 C C1 BMA . D BMA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.361 ? covale ? covale10 C O3 BMA . D BMA 3 1_555 C C1 BMA . D BMA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale11 C O3 BMA . D BMA 4 1_555 C C1 BMA . D BMA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.383 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 315 n n C1 O1 NAG sing 316 n n C1 O5 NAG sing 317 n n C1 H1 NAG sing 318 n n C2 C3 NAG sing 319 n n C2 N2 NAG sing 320 n n C2 H2 NAG sing 321 n n C3 C4 NAG sing 322 n n C3 O3 NAG sing 323 n n C3 H3 NAG sing 324 n n C4 C5 NAG sing 325 n n C4 O4 NAG sing 326 n n C4 H4 NAG sing 327 n n C5 C6 NAG sing 328 n n C5 O5 NAG sing 329 n n C5 H5 NAG sing 330 n n C6 O6 NAG sing 331 n n C6 H61 NAG sing 332 n n C6 H62 NAG sing 333 n n C7 C8 NAG sing 334 n n C7 N2 NAG sing 335 n n C7 O7 NAG doub 336 n n C8 H81 NAG sing 337 n n C8 H82 NAG sing 338 n n C8 H83 NAG sing 339 n n N2 HN2 NAG sing 340 n n O1 HO1 NAG sing 341 n n O3 HO3 NAG sing 342 n n O4 HO4 NAG sing 343 n n O6 HO6 NAG sing 344 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7SLY _atom_sites.fract_transf_matrix[1][1] 0.015389 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009011 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006762 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG A 1 501 640 NAG NAG . E 5 9S5 A 1 502 4000 9S5 PFE . F 4 NAG A 1 503 640 NAG NAG . G 6 HOH A 1 601 27 HOH HOH . G 6 HOH A 2 602 95 HOH HOH . G 6 HOH A 3 603 6 HOH HOH . G 6 HOH A 4 604 69 HOH HOH . G 6 HOH A 5 605 18 HOH HOH . G 6 HOH A 6 606 2 HOH HOH . G 6 HOH A 7 607 31 HOH HOH . G 6 HOH A 8 608 8 HOH HOH . G 6 HOH A 9 609 102 HOH HOH . G 6 HOH A 10 610 62 HOH HOH . G 6 HOH A 11 611 19 HOH HOH . G 6 HOH A 12 612 4 HOH HOH . G 6 HOH A 13 613 20 HOH HOH . G 6 HOH A 14 614 11 HOH HOH . G 6 HOH A 15 615 121 HOH HOH . G 6 HOH A 16 616 98 HOH HOH . G 6 HOH A 17 617 120 HOH HOH . G 6 HOH A 18 618 28 HOH HOH . G 6 HOH A 19 619 33 HOH HOH . G 6 HOH A 20 620 30 HOH HOH . G 6 HOH A 21 621 57 HOH HOH . G 6 HOH A 22 622 84 HOH HOH . G 6 HOH A 23 623 46 HOH HOH . G 6 HOH A 24 624 38 HOH HOH . G 6 HOH A 25 625 51 HOH HOH . G 6 HOH A 26 626 17 HOH HOH . G 6 HOH A 27 627 59 HOH HOH . G 6 HOH A 28 628 115 HOH HOH . G 6 HOH A 29 629 3 HOH HOH . G 6 HOH A 30 630 16 HOH HOH . G 6 HOH A 31 631 13 HOH HOH . G 6 HOH A 32 632 14 HOH HOH . G 6 HOH A 33 633 50 HOH HOH . G 6 HOH A 34 634 58 HOH HOH . G 6 HOH A 35 635 108 HOH HOH . G 6 HOH A 36 636 37 HOH HOH . G 6 HOH A 37 637 21 HOH HOH . G 6 HOH A 38 638 24 HOH HOH . G 6 HOH A 39 639 118 HOH HOH . G 6 HOH A 40 640 106 HOH HOH . G 6 HOH A 41 641 10 HOH HOH . G 6 HOH A 42 642 75 HOH HOH . G 6 HOH A 43 643 144 HOH HOH . G 6 HOH A 44 644 43 HOH HOH . G 6 HOH A 45 645 9 HOH HOH . G 6 HOH A 46 646 44 HOH HOH . G 6 HOH A 47 647 60 HOH HOH . G 6 HOH A 48 648 140 HOH HOH . G 6 HOH A 49 649 5 HOH HOH . G 6 HOH A 50 650 29 HOH HOH . G 6 HOH A 51 651 42 HOH HOH . G 6 HOH A 52 652 71 HOH HOH . G 6 HOH A 53 653 25 HOH HOH . G 6 HOH A 54 654 116 HOH HOH . G 6 HOH A 55 655 126 HOH HOH . G 6 HOH A 56 656 132 HOH HOH . G 6 HOH A 57 657 61 HOH HOH . G 6 HOH A 58 658 39 HOH HOH . G 6 HOH A 59 659 26 HOH HOH . G 6 HOH A 60 660 87 HOH HOH . G 6 HOH A 61 661 88 HOH HOH . G 6 HOH A 62 662 23 HOH HOH . G 6 HOH A 63 663 91 HOH HOH . G 6 HOH A 64 664 77 HOH HOH . G 6 HOH A 65 665 81 HOH HOH . G 6 HOH A 66 666 138 HOH HOH . G 6 HOH A 67 667 131 HOH HOH . G 6 HOH A 68 668 15 HOH HOH . G 6 HOH A 69 669 36 HOH HOH . G 6 HOH A 70 670 104 HOH HOH . G 6 HOH A 71 671 12 HOH HOH . G 6 HOH A 72 672 79 HOH HOH . G 6 HOH A 73 673 96 HOH HOH . G 6 HOH A 74 674 111 HOH HOH . G 6 HOH A 75 675 114 HOH HOH . G 6 HOH A 76 676 22 HOH HOH . G 6 HOH A 77 677 73 HOH HOH . G 6 HOH A 78 678 68 HOH HOH . G 6 HOH A 79 679 90 HOH HOH . G 6 HOH A 80 680 74 HOH HOH . G 6 HOH A 81 681 53 HOH HOH . G 6 HOH A 82 682 40 HOH HOH . G 6 HOH A 83 683 49 HOH HOH . G 6 HOH A 84 684 72 HOH HOH . G 6 HOH A 85 685 103 HOH HOH . G 6 HOH A 86 686 92 HOH HOH . G 6 HOH A 87 687 45 HOH HOH . G 6 HOH A 88 688 32 HOH HOH . G 6 HOH A 89 689 35 HOH HOH . G 6 HOH A 90 690 34 HOH HOH . G 6 HOH A 91 691 105 HOH HOH . G 6 HOH A 92 692 139 HOH HOH . G 6 HOH A 93 693 76 HOH HOH . G 6 HOH A 94 694 78 HOH HOH . G 6 HOH A 95 695 137 HOH HOH . G 6 HOH A 96 696 89 HOH HOH . G 6 HOH A 97 697 55 HOH HOH . G 6 HOH A 98 698 122 HOH HOH . G 6 HOH A 99 699 107 HOH HOH . G 6 HOH A 100 700 124 HOH HOH . G 6 HOH A 101 701 64 HOH HOH . G 6 HOH A 102 702 97 HOH HOH . G 6 HOH A 103 703 117 HOH HOH . G 6 HOH A 104 704 54 HOH HOH . G 6 HOH A 105 705 112 HOH HOH . G 6 HOH A 106 706 135 HOH HOH . G 6 HOH A 107 707 70 HOH HOH . G 6 HOH A 108 708 67 HOH HOH . G 6 HOH A 109 709 63 HOH HOH . G 6 HOH A 110 710 48 HOH HOH . G 6 HOH A 111 711 123 HOH HOH . G 6 HOH A 112 712 128 HOH HOH . G 6 HOH A 113 713 134 HOH HOH . G 6 HOH A 114 714 136 HOH HOH . G 6 HOH A 115 715 143 HOH HOH . G 6 HOH A 116 716 52 HOH HOH . G 6 HOH A 117 717 41 HOH HOH . G 6 HOH A 118 718 141 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . F 4 15.276 -50.911 -58.832 1 130.72 ? C1 NAG 503 A 1 HETATM 2 C C2 NAG . . . F 4 14.344 -51.296 -59.984 1 132.22 ? C2 NAG 503 A 1 HETATM 3 C C3 NAG . . . F 4 13.845 -52.729 -59.783 1 132.36 ? C3 NAG 503 A 1 HETATM 4 C C4 NAG . . . F 4 15.015 -53.697 -59.628 1 132.75 ? C4 NAG 503 A 1 HETATM 5 C C5 NAG . . . F 4 15.939 -53.237 -58.5 1 132.44 ? C5 NAG 503 A 1 HETATM 6 C C6 NAG . . . F 4 17.215 -54.047 -58.396 1 132.09 ? C6 NAG 503 A 1 HETATM 7 C C7 NAG . . . F 4 13.215 -49.314 -60.939 1 133 ? C7 NAG 503 A 1 HETATM 8 C C8 NAG . . . F 4 11.883 -48.654 -61.142 1 132.74 ? C8 NAG 503 A 1 HETATM 9 N N2 NAG . . . F 4 13.222 -50.378 -60.118 1 132.67 ? N2 NAG 503 A 1 HETATM 10 O O3 NAG . . . F 4 13.045 -53.114 -60.896 1 132.03 ? O3 NAG 503 A 1 HETATM 11 O O4 NAG . . . F 4 14.527 -55.006 -59.347 1 133.08 ? O4 NAG 503 A 1 HETATM 12 O O5 NAG . . . F 4 16.338 -51.869 -58.714 1 132.14 ? O5 NAG 503 A 1 HETATM 13 O O6 NAG . . . F 4 18.099 -53.792 -59.482 1 131.32 ? O6 NAG 503 A 1 HETATM 14 O O7 NAG . . . F 4 14.233 -48.908 -61.496 1 133.2 ? O7 NAG 503 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #