data_7SMM # _model_server_result.job_id FtDNZjx0pGncFg1dWqoFSw _model_server_result.datetime_utc '2024-11-04 22:33:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7smm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":501}' # _entry.id 7SMM # _exptl.entry_id 7SMM _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 11 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7SMM _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7SMM _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 11 M N N ? 11 N N N ? 11 V N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 5 oligosaccharide 6 oligosaccharide 7 oligosaccharide 8 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 5 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 5 4 3 MAN BMA C1 O1 . O6 HO6 . sing 4 ? 5 5 4 MAN MAN C1 O1 . O3 HO3 . sing 5 ? 5 6 4 MAN MAN C1 O1 . O6 HO6 . sing 6 ? 5 7 3 MAN BMA C1 O1 . O3 HO3 . sing 7 ? 6 2 1 NAG NAG C1 O1 . O4 HO4 . sing 8 ? 6 3 2 BMA NAG C1 O1 . O4 HO4 . sing 9 ? 7 2 1 NAG NAG C1 O1 . O4 HO4 . sing 10 ? 8 2 1 NAG NAG C1 O1 . O4 HO4 . sing 11 ? 8 3 2 BMA NAG C1 O1 . O4 HO4 . sing 12 ? 8 4 3 MAN BMA C1 O1 . O6 HO6 . sing 13 ? 8 5 4 MAN MAN C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 5 n F NAG 1 F 1 NAG A 501 NAG 5 n F NAG 2 F 2 NAG A 502 NAG 5 n F BMA 3 F 3 BMA A 503 BMA 5 n F MAN 4 F 4 MAN A 504 MAN 5 n F MAN 5 F 5 MAN A 505 MAN 5 n F MAN 6 F 6 MAN A 507 MAN 5 n F MAN 7 F 7 MAN A 506 MAN 6 n G NAG 1 G 1 NAG B 601 NAG 6 n G NAG 2 G 2 NAG B 602 NAG 6 n G BMA 3 G 3 BMA B 603 BMA 7 n H NAG 1 H 1 NAG C 501 NAG 7 n H NAG 2 H 2 NAG C 502 NAG 5 n I NAG 1 I 1 NAG D 501 NAG 5 n I NAG 2 I 2 NAG D 502 NAG 5 n I BMA 3 I 3 BMA D 503 BMA 5 n I MAN 4 I 4 MAN D 504 MAN 5 n I MAN 5 I 5 MAN D 505 MAN 5 n I MAN 6 I 6 MAN D 507 MAN 5 n I MAN 7 I 7 MAN D 506 MAN 8 n J NAG 1 J 1 NAG E 501 NAG 8 n J NAG 2 J 2 NAG E 502 NAG 8 n J BMA 3 J 3 BMA E 503 BMA 8 n J MAN 4 J 4 MAN E 504 MAN 8 n J MAN 5 J 5 MAN E 505 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 128 A CYS 128 1_555 A SG CYS 142 A CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf2 A SG CYS 192 A CYS 192 1_555 A SG CYS 193 A CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf3 B SG CYS 130 B CYS 130 1_555 B SG CYS 144 B CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf4 C SG CYS 128 C CYS 128 1_555 C SG CYS 142 C CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf5 D SG CYS 128 D CYS 128 1_555 D SG CYS 142 D CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 D SG CYS 192 D CYS 192 1_555 D SG CYS 193 D CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf7 E SG CYS 128 E CYS 128 1_555 E SG CYS 142 E CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A ND2 ASN 141 A ASN 141 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale2 B ND2 ASN 70 B ASN 70 1_555 M C1 NAG . B NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale3 B ND2 ASN 143 B ASN 143 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale4 B ND2 ASN 208 B ASN 208 1_555 N C1 NAG . B NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale5 C ND2 ASN 141 C ASN 141 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale6 D ND2 ASN 141 D ASN 141 1_555 I C1 NAG . I NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale7 E ND2 ASN 68 E ASN 68 1_555 V C1 NAG . E NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale8 E ND2 ASN 141 E ASN 141 1_555 J C1 NAG . J NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale9 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale10 F O4 NAG . F NAG 2 1_555 F C1 BMA . F BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale11 F O6 BMA . F BMA 3 1_555 F C1 MAN . F MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale12 F O3 BMA . F BMA 3 1_555 F C1 MAN . F MAN 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale13 F O3 MAN . F MAN 4 1_555 F C1 MAN . F MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale14 F O6 MAN . F MAN 4 1_555 F C1 MAN . F MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale15 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale16 G O4 NAG . G NAG 2 1_555 G C1 BMA . G BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale17 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale18 I O4 NAG . I NAG 1 1_555 I C1 NAG . I NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale19 I O4 NAG . I NAG 2 1_555 I C1 BMA . I BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale20 I O6 BMA . I BMA 3 1_555 I C1 MAN . I MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale21 I O3 BMA . I BMA 3 1_555 I C1 MAN . I MAN 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale22 I O3 MAN . I MAN 4 1_555 I C1 MAN . I MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale23 I O6 MAN . I MAN 4 1_555 I C1 MAN . I MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale24 J O4 NAG . J NAG 1 1_555 J C1 NAG . J NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale25 J O4 NAG . J NAG 2 1_555 J C1 BMA . J BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale26 J O6 BMA . J BMA 3 1_555 J C1 MAN . J MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale27 J O6 MAN . J MAN 4 1_555 J C1 MAN . J MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7SMM _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 9 POV A 1 501 1 POV POV . L 10 CLR A 1 502 2 CLR CLR . M 11 NAG B 1 601 604 NAG NAG . N 11 NAG B 1 602 605 NAG NAG . O 9 POV B 1 603 3 POV POV . P 9 POV B 1 604 4 POV POV . Q 12 DD9 B 1 605 1 DD9 DD9 . R 9 POV C 1 501 5 POV POV . S 10 CLR C 1 502 6 CLR CLR . T 10 CLR D 1 501 7 CLR CLR . U 9 POV D 1 502 8 POV POV . V 11 NAG E 1 501 506 NAG NAG . W 9 POV E 1 502 9 POV POV . X 9 POV E 1 503 10 POV POV . Y 9 POV E 1 504 11 POV POV . Z 13 HOH A 1 601 40 HOH HOH . Z 13 HOH A 2 602 37 HOH HOH . Z 13 HOH A 3 603 35 HOH HOH . Z 13 HOH A 4 604 57 HOH HOH . Z 13 HOH A 5 605 42 HOH HOH . Z 13 HOH A 6 606 50 HOH HOH . AA 13 HOH B 1 701 23 HOH HOH . AA 13 HOH B 2 702 54 HOH HOH . AA 13 HOH B 3 703 15 HOH HOH . AA 13 HOH B 4 704 34 HOH HOH . AA 13 HOH B 5 705 28 HOH HOH . AA 13 HOH B 6 706 25 HOH HOH . AA 13 HOH B 7 707 52 HOH HOH . AA 13 HOH B 8 708 26 HOH HOH . AA 13 HOH B 9 709 43 HOH HOH . AA 13 HOH B 10 710 53 HOH HOH . AA 13 HOH B 11 711 59 HOH HOH . AA 13 HOH B 12 712 3 HOH HOH . AA 13 HOH B 13 713 16 HOH HOH . AA 13 HOH B 14 714 20 HOH HOH . BA 13 HOH C 1 601 61 HOH HOH . BA 13 HOH C 2 602 27 HOH HOH . BA 13 HOH C 3 603 30 HOH HOH . BA 13 HOH C 4 604 47 HOH HOH . BA 13 HOH C 5 605 32 HOH HOH . BA 13 HOH C 6 606 14 HOH HOH . BA 13 HOH C 7 607 7 HOH HOH . BA 13 HOH C 8 608 8 HOH HOH . BA 13 HOH C 9 609 11 HOH HOH . BA 13 HOH C 10 610 5 HOH HOH . BA 13 HOH C 11 611 62 HOH HOH . BA 13 HOH C 12 612 10 HOH HOH . BA 13 HOH C 13 613 38 HOH HOH . BA 13 HOH C 14 614 48 HOH HOH . BA 13 HOH C 15 615 2 HOH HOH . BA 13 HOH C 16 616 13 HOH HOH . BA 13 HOH C 17 617 33 HOH HOH . CA 13 HOH D 1 601 9 HOH HOH . CA 13 HOH D 2 602 24 HOH HOH . CA 13 HOH D 3 603 39 HOH HOH . CA 13 HOH D 4 604 18 HOH HOH . CA 13 HOH D 5 605 51 HOH HOH . CA 13 HOH D 6 606 45 HOH HOH . CA 13 HOH D 7 607 36 HOH HOH . CA 13 HOH D 8 608 22 HOH HOH . CA 13 HOH D 9 609 56 HOH HOH . CA 13 HOH D 10 610 12 HOH HOH . CA 13 HOH D 11 611 29 HOH HOH . CA 13 HOH D 12 612 44 HOH HOH . CA 13 HOH D 13 613 46 HOH HOH . DA 13 HOH E 1 601 6 HOH HOH . DA 13 HOH E 2 602 49 HOH HOH . DA 13 HOH E 3 603 58 HOH HOH . DA 13 HOH E 4 604 4 HOH HOH . DA 13 HOH E 5 605 31 HOH HOH . DA 13 HOH E 6 606 41 HOH HOH . DA 13 HOH E 7 607 17 HOH HOH . DA 13 HOH E 8 608 60 HOH HOH . DA 13 HOH E 9 609 21 HOH HOH . DA 13 HOH E 10 610 1 HOH HOH . DA 13 HOH E 11 611 19 HOH HOH . DA 13 HOH E 12 612 55 HOH HOH . DA 13 HOH E 13 613 63 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . V 11 115.418 64.875 132.587 1 80.87 ? C1 NAG 501 E 1 HETATM 2 C C2 NAG . . . V 11 116.238 63.779 131.911 1 80.87 ? C2 NAG 501 E 1 HETATM 3 C C3 NAG . . . V 11 115.325 62.836 131.132 1 80.87 ? C3 NAG 501 E 1 HETATM 4 C C4 NAG . . . V 11 114.213 62.31 132.028 1 80.87 ? C4 NAG 501 E 1 HETATM 5 C C5 NAG . . . V 11 113.479 63.473 132.685 1 80.87 ? C5 NAG 501 E 1 HETATM 6 C C6 NAG . . . V 11 112.427 63.029 133.674 1 80.87 ? C6 NAG 501 E 1 HETATM 7 C C7 NAG . . . V 11 118.526 63.977 131.042 1 80.87 ? C7 NAG 501 E 1 HETATM 8 C C8 NAG . . . V 11 119.423 64.677 130.067 1 80.87 ? C8 NAG 501 E 1 HETATM 9 N N2 NAG . . . V 11 117.244 64.354 131.032 1 80.87 ? N2 NAG 501 E 1 HETATM 10 O O3 NAG . . . V 11 116.092 61.752 130.622 1 80.87 ? O3 NAG 501 E 1 HETATM 11 O O4 NAG . . . V 11 113.289 61.547 131.26 1 80.87 ? O4 NAG 501 E 1 HETATM 12 O O5 NAG . . . V 11 114.413 64.285 133.41 1 80.87 ? O5 NAG 501 E 1 HETATM 13 O O6 NAG . . . V 11 111.531 64.086 133.986 1 80.87 ? O6 NAG 501 E 1 HETATM 14 O O7 NAG . . . V 11 118.944 63.11 131.803 1 80.87 ? O7 NAG 501 E 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 14 #