data_7SNH # _model_server_result.job_id 5rxD5AIFA9uzPhgw9KwmVw _model_server_result.datetime_utc '2024-12-23 02:20:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7snh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":601}' # _entry.id 7SNH # _exptl.entry_id 7SNH _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 235 n n PA O2A NAP sing 236 n n PA O5B NAP sing 237 n n PA O3 NAP sing 238 n n O2A HOA2 NAP sing 239 n n O5B C5B NAP sing 240 n n C5B C4B NAP sing 241 n n C5B H51A NAP sing 242 n n C5B H52A NAP sing 243 n n C4B O4B NAP sing 244 n n C4B C3B NAP sing 245 n n C4B H4B NAP sing 246 n n O4B C1B NAP sing 247 n n C3B O3B NAP sing 248 n n C3B C2B NAP sing 249 n n C3B H3B NAP sing 250 n n O3B HO3A NAP sing 251 n n C2B O2B NAP sing 252 n n C2B C1B NAP sing 253 n n C2B H2B NAP sing 254 n n O2B P2B NAP sing 255 n n C1B N9A NAP sing 256 n n C1B H1B NAP sing 257 n n N9A C8A NAP sing 258 n y N9A C4A NAP sing 259 n y C8A N7A NAP doub 260 n y C8A H8A NAP sing 261 n n N7A C5A NAP sing 262 n y C5A C6A NAP sing 263 n y C5A C4A NAP doub 264 n y C6A N6A NAP sing 265 n n C6A N1A NAP doub 266 n y N6A H61A NAP sing 267 n n N6A H62A NAP sing 268 n n N1A C2A NAP sing 269 n y C2A N3A NAP doub 270 n y C2A H2A NAP sing 271 n n N3A C4A NAP sing 272 n y O3 PN NAP sing 273 n n PN O1N NAP doub 274 n n PN O2N NAP sing 275 n n PN O5D NAP sing 276 n n O5D C5D NAP sing 277 n n C5D C4D NAP sing 278 n n C5D H51N NAP sing 279 n n C5D H52N NAP sing 280 n n C4D O4D NAP sing 281 n n C4D C3D NAP sing 282 n n C4D H4D NAP sing 283 n n O4D C1D NAP sing 284 n n C3D O3D NAP sing 285 n n C3D C2D NAP sing 286 n n C3D H3D NAP sing 287 n n O3D HO3N NAP sing 288 n n C2D O2D NAP sing 289 n n C2D C1D NAP sing 290 n n C2D H2D NAP sing 291 n n O2D HO2N NAP sing 292 n n C1D N1N NAP sing 293 n n C1D H1D NAP sing 294 n n N1N C2N NAP sing 295 n y N1N C6N NAP doub 296 n y C2N C3N NAP doub 297 n y C2N H2N NAP sing 298 n n C3N C7N NAP sing 299 n n C3N C4N NAP sing 300 n y C7N O7N NAP doub 301 n n C7N N7N NAP sing 302 n n N7N H71N NAP sing 303 n n N7N H72N NAP sing 304 n n C4N C5N NAP doub 305 n y C4N H4N NAP sing 306 n n C5N C6N NAP sing 307 n y C5N H5N NAP sing 308 n n C6N H6N NAP sing 309 n n P2B O1X NAP doub 310 n n P2B O2X NAP sing 311 n n P2B O3X NAP sing 312 n n O2X HOP2 NAP sing 313 n n O3X HOP3 NAP sing 314 n n # _atom_sites.entry_id 7SNH _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NAP A 1 601 799 NAP NAP . F 2 NAP A 1 602 811 NAP NAP . G 2 NAP B 1 601 799 NAP NAP . H 2 NAP B 1 602 811 NAP NAP . I 2 NAP C 1 601 799 NAP NAP . J 2 NAP C 1 602 811 NAP NAP . K 2 NAP D 1 601 799 NAP NAP . L 2 NAP D 1 602 811 NAP NAP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . E 2 59.082 103.868 31.743 1 59.4 ? PA NAP 601 A 1 HETATM 2 O O1A NAP . . . E 2 57.667 103.758 31.24 1 59.4 ? O1A NAP 601 A 1 HETATM 3 O O2A NAP . . . E 2 59.71 105.228 31.889 1 59.4 ? O2A NAP 601 A 1 HETATM 4 O O5B NAP . . . E 2 60.001 102.973 30.773 1 59.4 ? O5B NAP 601 A 1 HETATM 5 C C5B NAP . . . E 2 61.248 103.475 30.305 1 59.4 ? C5B NAP 601 A 1 HETATM 6 C C4B NAP . . . E 2 61.296 103.518 28.784 1 59.4 ? C4B NAP 601 A 1 HETATM 7 O O4B NAP . . . E 2 60.892 102.271 28.212 1 59.4 ? O4B NAP 601 A 1 HETATM 8 C C3B NAP . . . E 2 60.362 104.546 28.178 1 59.4 ? C3B NAP 601 A 1 HETATM 9 O O3B NAP . . . E 2 60.957 105.841 28.115 1 59.4 ? O3B NAP 601 A 1 HETATM 10 C C2B NAP . . . E 2 60.129 103.991 26.801 1 59.4 ? C2B NAP 601 A 1 HETATM 11 O O2B NAP . . . E 2 61.14 104.472 25.933 1 59.4 ? O2B NAP 601 A 1 HETATM 12 C C1B NAP . . . E 2 60.256 102.493 26.955 1 59.4 ? C1B NAP 601 A 1 HETATM 13 N N9A NAP . . . E 2 58.924 101.857 26.984 1 59.4 ? N9A NAP 601 A 1 HETATM 14 C C8A NAP . . . E 2 57.919 102.2 27.802 1 59.4 ? C8A NAP 601 A 1 HETATM 15 N N7A NAP . . . E 2 56.833 101.42 27.594 1 59.4 ? N7A NAP 601 A 1 HETATM 16 C C5A NAP . . . E 2 57.143 100.547 26.626 1 59.4 ? C5A NAP 601 A 1 HETATM 17 C C6A NAP . . . E 2 56.448 99.446 25.924 1 59.4 ? C6A NAP 601 A 1 HETATM 18 N N6A NAP . . . E 2 55.171 99.112 26.226 1 59.4 ? N6A NAP 601 A 1 HETATM 19 N N1A NAP . . . E 2 57.133 98.784 24.971 1 59.4 ? N1A NAP 601 A 1 HETATM 20 C C2A NAP . . . E 2 58.399 99.106 24.662 1 59.4 ? C2A NAP 601 A 1 HETATM 21 N N3A NAP . . . E 2 59.084 100.092 25.257 1 59.4 ? N3A NAP 601 A 1 HETATM 22 C C4A NAP . . . E 2 58.523 100.838 26.229 1 59.4 ? C4A NAP 601 A 1 HETATM 23 O O3 NAP . . . E 2 59.164 103.128 33.167 1 59.4 ? O3 NAP 601 A 1 HETATM 24 P PN NAP . . . E 2 60.524 103.032 34.02 1 59.4 ? PN NAP 601 A 1 HETATM 25 O O1N NAP . . . E 2 61.658 103.613 33.22 1 59.4 ? O1N NAP 601 A 1 HETATM 26 O O2N NAP . . . E 2 60.273 103.549 35.412 1 59.4 ? O2N NAP 601 A 1 HETATM 27 O O5D NAP . . . E 2 60.707 101.44 34.084 1 59.4 ? O5D NAP 601 A 1 HETATM 28 C C5D NAP . . . E 2 61.991 100.831 34.166 1 59.4 ? C5D NAP 601 A 1 HETATM 29 C C4D NAP . . . E 2 61.842 99.502 34.89 1 59.4 ? C4D NAP 601 A 1 HETATM 30 O O4D NAP . . . E 2 62.449 99.587 36.176 1 59.4 ? O4D NAP 601 A 1 HETATM 31 C C3D NAP . . . E 2 60.383 99.15 35.103 1 59.4 ? C3D NAP 601 A 1 HETATM 32 O O3D NAP . . . E 2 60.139 97.804 34.706 1 59.4 ? O3D NAP 601 A 1 HETATM 33 C C2D NAP . . . E 2 60.135 99.319 36.58 1 59.4 ? C2D NAP 601 A 1 HETATM 34 O O2D NAP . . . E 2 59.324 98.267 37.099 1 59.4 ? O2D NAP 601 A 1 HETATM 35 C C1D NAP . . . E 2 61.512 99.285 37.206 1 59.4 ? C1D NAP 601 A 1 HETATM 36 N N1N NAP . . . E 2 61.58 100.279 38.266 1 59.4 ? N1N NAP 601 A 1 HETATM 37 C C2N NAP . . . E 2 61.331 101.561 37.985 1 59.4 ? C2N NAP 601 A 1 HETATM 38 C C3N NAP . . . E 2 61.39 102.517 38.986 1 59.4 ? C3N NAP 601 A 1 HETATM 39 C C7N NAP . . . E 2 61.118 103.954 38.673 1 59.4 ? C7N NAP 601 A 1 HETATM 40 O O7N NAP . . . E 2 60.089 104.256 38.094 1 59.4 ? O7N NAP 601 A 1 HETATM 41 N N7N NAP . . . E 2 62.017 104.863 39.041 1 59.4 ? N7N NAP 601 A 1 HETATM 42 C C4N NAP . . . E 2 61.702 102.139 40.279 1 59.4 ? C4N NAP 601 A 1 HETATM 43 C C5N NAP . . . E 2 61.952 100.802 40.541 1 59.4 ? C5N NAP 601 A 1 HETATM 44 C C6N NAP . . . E 2 61.884 99.883 39.505 1 59.4 ? C6N NAP 601 A 1 HETATM 45 P P2B NAP . . . E 2 60.852 104.706 24.373 1 59.4 ? P2B NAP 601 A 1 HETATM 46 O O1X NAP . . . E 2 61.944 105.651 23.955 1 59.4 ? O1X NAP 601 A 1 HETATM 47 O O2X NAP . . . E 2 59.464 105.299 24.357 1 59.4 ? O2X NAP 601 A 1 HETATM 48 O O3X NAP . . . E 2 60.956 103.338 23.757 1 59.4 ? O3X NAP 601 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 376 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 48 #