data_7SNO # _model_server_result.job_id ewlLLZjdomZqvvyIR_FzCw _model_server_result.datetime_utc '2024-11-07 10:10:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7sno # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":609}' # _entry.id 7SNO # _exptl.entry_id 7SNO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7SNO _cell.length_a 154.72 _cell.length_b 154.72 _cell.length_c 45.97 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7SNO _symmetry.cell_setting ? _symmetry.Int_Tables_number 171 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id K _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 L6S GAL C1 O1 . O3 HO3 . sing 2 ? 2 3 2 GAL L6S C1 O1 . O4 HO4 . sing 3 ? 2 4 3 L6S GAL C1 O1 . O3 HO3 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B GAL 1 B 1 GAL B 4 GAL 2 n B L6S 2 B 2 L6S B 3 L6S 2 n B GAL 3 B 3 GAL B 2 GAL 2 n B L6S 4 B 4 L6S B 1 L6S # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O3 GAL . B GAL 1 1_555 B C1 L6S . B L6S 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale2 B O4 L6S . B L6S 2 1_555 B C1 GAL . B GAL 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale3 B O3 GAL . B GAL 3 1_555 B C1 L6S . B L6S 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? metalc ? metalc1 A OD1 ASP 40 A ASP 46 1_555 K NA NA . A NA 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc2 A OD1 ASP 41 A ASP 47 1_555 K NA NA . A NA 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc3 A OD1 ASP 333 A ASP 339 1_555 K NA NA . A NA 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.8 ? metalc ? metalc4 A OD2 ASP 333 A ASP 339 1_555 K NA NA . A NA 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc5 A OE1 GLN 334 A GLN 340 1_555 K NA NA . A NA 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc6 K NA NA . A NA 609 1_555 B O1S L6S . B L6S 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7SNO _atom_sites.fract_transf_matrix[1][1] 0.006463 _atom_sites.fract_transf_matrix[1][2] 0.003732 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007463 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021753 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PEG A 1 601 1 PEG PEG . D 3 PEG A 1 602 2 PEG PEG . E 4 EDO A 1 603 3 EDO EDO . F 4 EDO A 1 604 4 EDO EDO . G 4 EDO A 1 605 5 EDO EDO . H 5 PG4 A 1 606 6 PG4 PG4 . I 6 PGE A 1 607 7 PGE PGE . J 4 EDO A 1 608 8 EDO EDO . K 7 NA A 1 609 1 NA NA . L 8 HOH A 1 701 119 HOH HOH . L 8 HOH A 2 702 264 HOH HOH . L 8 HOH A 3 703 258 HOH HOH . L 8 HOH A 4 704 176 HOH HOH . L 8 HOH A 5 705 65 HOH HOH . L 8 HOH A 6 706 45 HOH HOH . L 8 HOH A 7 707 74 HOH HOH . L 8 HOH A 8 708 64 HOH HOH . L 8 HOH A 9 709 150 HOH HOH . L 8 HOH A 10 710 123 HOH HOH . L 8 HOH A 11 711 41 HOH HOH . L 8 HOH A 12 712 67 HOH HOH . L 8 HOH A 13 713 22 HOH HOH . L 8 HOH A 14 714 212 HOH HOH . L 8 HOH A 15 715 73 HOH HOH . L 8 HOH A 16 716 156 HOH HOH . L 8 HOH A 17 717 137 HOH HOH . L 8 HOH A 18 718 49 HOH HOH . L 8 HOH A 19 719 53 HOH HOH . L 8 HOH A 20 720 179 HOH HOH . L 8 HOH A 21 721 259 HOH HOH . L 8 HOH A 22 722 112 HOH HOH . L 8 HOH A 23 723 3 HOH HOH . L 8 HOH A 24 724 72 HOH HOH . L 8 HOH A 25 725 95 HOH HOH . L 8 HOH A 26 726 61 HOH HOH . L 8 HOH A 27 727 97 HOH HOH . L 8 HOH A 28 728 184 HOH HOH . L 8 HOH A 29 729 21 HOH HOH . L 8 HOH A 30 730 222 HOH HOH . L 8 HOH A 31 731 12 HOH HOH . L 8 HOH A 32 732 81 HOH HOH . L 8 HOH A 33 733 1 HOH HOH . L 8 HOH A 34 734 183 HOH HOH . L 8 HOH A 35 735 46 HOH HOH . L 8 HOH A 36 736 57 HOH HOH . L 8 HOH A 37 737 15 HOH HOH . L 8 HOH A 38 738 239 HOH HOH . L 8 HOH A 39 739 14 HOH HOH . L 8 HOH A 40 740 66 HOH HOH . L 8 HOH A 41 741 82 HOH HOH . L 8 HOH A 42 742 140 HOH HOH . L 8 HOH A 43 743 139 HOH HOH . L 8 HOH A 44 744 80 HOH HOH . L 8 HOH A 45 745 169 HOH HOH . L 8 HOH A 46 746 165 HOH HOH . L 8 HOH A 47 747 69 HOH HOH . L 8 HOH A 48 748 126 HOH HOH . L 8 HOH A 49 749 158 HOH HOH . L 8 HOH A 50 750 125 HOH HOH . L 8 HOH A 51 751 105 HOH HOH . L 8 HOH A 52 752 42 HOH HOH . L 8 HOH A 53 753 84 HOH HOH . L 8 HOH A 54 754 28 HOH HOH . L 8 HOH A 55 755 182 HOH HOH . L 8 HOH A 56 756 26 HOH HOH . L 8 HOH A 57 757 29 HOH HOH . L 8 HOH A 58 758 56 HOH HOH . L 8 HOH A 59 759 136 HOH HOH . L 8 HOH A 60 760 90 HOH HOH . L 8 HOH A 61 761 196 HOH HOH . L 8 HOH A 62 762 2 HOH HOH . L 8 HOH A 63 763 30 HOH HOH . L 8 HOH A 64 764 6 HOH HOH . L 8 HOH A 65 765 27 HOH HOH . L 8 HOH A 66 766 114 HOH HOH . L 8 HOH A 67 767 266 HOH HOH . L 8 HOH A 68 768 170 HOH HOH . L 8 HOH A 69 769 63 HOH HOH . L 8 HOH A 70 770 142 HOH HOH . L 8 HOH A 71 771 38 HOH HOH . L 8 HOH A 72 772 60 HOH HOH . L 8 HOH A 73 773 68 HOH HOH . L 8 HOH A 74 774 11 HOH HOH . L 8 HOH A 75 775 229 HOH HOH . L 8 HOH A 76 776 118 HOH HOH . L 8 HOH A 77 777 77 HOH HOH . L 8 HOH A 78 778 9 HOH HOH . L 8 HOH A 79 779 228 HOH HOH . L 8 HOH A 80 780 17 HOH HOH . L 8 HOH A 81 781 75 HOH HOH . L 8 HOH A 82 782 25 HOH HOH . L 8 HOH A 83 783 18 HOH HOH . L 8 HOH A 84 784 31 HOH HOH . L 8 HOH A 85 785 110 HOH HOH . L 8 HOH A 86 786 108 HOH HOH . L 8 HOH A 87 787 50 HOH HOH . L 8 HOH A 88 788 52 HOH HOH . L 8 HOH A 89 789 265 HOH HOH . L 8 HOH A 90 790 7 HOH HOH . L 8 HOH A 91 791 93 HOH HOH . L 8 HOH A 92 792 103 HOH HOH . L 8 HOH A 93 793 92 HOH HOH . L 8 HOH A 94 794 130 HOH HOH . L 8 HOH A 95 795 35 HOH HOH . L 8 HOH A 96 796 88 HOH HOH . L 8 HOH A 97 797 107 HOH HOH . L 8 HOH A 98 798 190 HOH HOH . L 8 HOH A 99 799 231 HOH HOH . L 8 HOH A 100 800 99 HOH HOH . L 8 HOH A 101 801 187 HOH HOH . L 8 HOH A 102 802 20 HOH HOH . L 8 HOH A 103 803 152 HOH HOH . L 8 HOH A 104 804 113 HOH HOH . L 8 HOH A 105 805 164 HOH HOH . L 8 HOH A 106 806 10 HOH HOH . L 8 HOH A 107 807 70 HOH HOH . L 8 HOH A 108 808 62 HOH HOH . L 8 HOH A 109 809 172 HOH HOH . L 8 HOH A 110 810 13 HOH HOH . L 8 HOH A 111 811 34 HOH HOH . L 8 HOH A 112 812 8 HOH HOH . L 8 HOH A 113 813 155 HOH HOH . L 8 HOH A 114 814 173 HOH HOH . L 8 HOH A 115 815 163 HOH HOH . L 8 HOH A 116 816 76 HOH HOH . L 8 HOH A 117 817 234 HOH HOH . L 8 HOH A 118 818 224 HOH HOH . L 8 HOH A 119 819 213 HOH HOH . L 8 HOH A 120 820 117 HOH HOH . L 8 HOH A 121 821 19 HOH HOH . L 8 HOH A 122 822 37 HOH HOH . L 8 HOH A 123 823 4 HOH HOH . L 8 HOH A 124 824 128 HOH HOH . L 8 HOH A 125 825 217 HOH HOH . L 8 HOH A 126 826 51 HOH HOH . L 8 HOH A 127 827 40 HOH HOH . L 8 HOH A 128 828 199 HOH HOH . L 8 HOH A 129 829 185 HOH HOH . L 8 HOH A 130 830 175 HOH HOH . L 8 HOH A 131 831 79 HOH HOH . L 8 HOH A 132 832 83 HOH HOH . L 8 HOH A 133 833 48 HOH HOH . L 8 HOH A 134 834 236 HOH HOH . L 8 HOH A 135 835 44 HOH HOH . L 8 HOH A 136 836 96 HOH HOH . L 8 HOH A 137 837 197 HOH HOH . L 8 HOH A 138 838 58 HOH HOH . L 8 HOH A 139 839 255 HOH HOH . L 8 HOH A 140 840 36 HOH HOH . L 8 HOH A 141 841 167 HOH HOH . L 8 HOH A 142 842 94 HOH HOH . L 8 HOH A 143 843 159 HOH HOH . L 8 HOH A 144 844 116 HOH HOH . L 8 HOH A 145 845 207 HOH HOH . L 8 HOH A 146 846 225 HOH HOH . L 8 HOH A 147 847 86 HOH HOH . L 8 HOH A 148 848 111 HOH HOH . L 8 HOH A 149 849 16 HOH HOH . L 8 HOH A 150 850 59 HOH HOH . L 8 HOH A 151 851 230 HOH HOH . L 8 HOH A 152 852 245 HOH HOH . L 8 HOH A 153 853 91 HOH HOH . L 8 HOH A 154 854 23 HOH HOH . L 8 HOH A 155 855 39 HOH HOH . L 8 HOH A 156 856 71 HOH HOH . L 8 HOH A 157 857 129 HOH HOH . L 8 HOH A 158 858 252 HOH HOH . L 8 HOH A 159 859 260 HOH HOH . L 8 HOH A 160 860 233 HOH HOH . L 8 HOH A 161 861 174 HOH HOH . L 8 HOH A 162 862 5 HOH HOH . L 8 HOH A 163 863 256 HOH HOH . L 8 HOH A 164 864 218 HOH HOH . L 8 HOH A 165 865 263 HOH HOH . L 8 HOH A 166 866 131 HOH HOH . L 8 HOH A 167 867 47 HOH HOH . L 8 HOH A 168 868 133 HOH HOH . L 8 HOH A 169 869 191 HOH HOH . L 8 HOH A 170 870 55 HOH HOH . L 8 HOH A 171 871 168 HOH HOH . L 8 HOH A 172 872 124 HOH HOH . L 8 HOH A 173 873 101 HOH HOH . L 8 HOH A 174 874 109 HOH HOH . L 8 HOH A 175 875 241 HOH HOH . L 8 HOH A 176 876 232 HOH HOH . L 8 HOH A 177 877 33 HOH HOH . L 8 HOH A 178 878 135 HOH HOH . L 8 HOH A 179 879 132 HOH HOH . L 8 HOH A 180 880 147 HOH HOH . L 8 HOH A 181 881 166 HOH HOH . L 8 HOH A 182 882 250 HOH HOH . L 8 HOH A 183 883 151 HOH HOH . L 8 HOH A 184 884 115 HOH HOH . L 8 HOH A 185 885 180 HOH HOH . L 8 HOH A 186 886 261 HOH HOH . L 8 HOH A 187 887 32 HOH HOH . L 8 HOH A 188 888 211 HOH HOH . L 8 HOH A 189 889 238 HOH HOH . L 8 HOH A 190 890 104 HOH HOH . L 8 HOH A 191 891 100 HOH HOH . L 8 HOH A 192 892 148 HOH HOH . L 8 HOH A 193 893 192 HOH HOH . L 8 HOH A 194 894 210 HOH HOH . L 8 HOH A 195 895 98 HOH HOH . L 8 HOH A 196 896 254 HOH HOH . L 8 HOH A 197 897 201 HOH HOH . L 8 HOH A 198 898 203 HOH HOH . L 8 HOH A 199 899 85 HOH HOH . L 8 HOH A 200 900 237 HOH HOH . L 8 HOH A 201 901 153 HOH HOH . L 8 HOH A 202 902 247 HOH HOH . L 8 HOH A 203 903 220 HOH HOH . L 8 HOH A 204 904 262 HOH HOH . L 8 HOH A 205 905 189 HOH HOH . L 8 HOH A 206 906 209 HOH HOH . L 8 HOH A 207 907 205 HOH HOH . L 8 HOH A 208 908 78 HOH HOH . L 8 HOH A 209 909 195 HOH HOH . L 8 HOH A 210 910 160 HOH HOH . L 8 HOH A 211 911 202 HOH HOH . L 8 HOH A 212 912 89 HOH HOH . L 8 HOH A 213 913 248 HOH HOH . L 8 HOH A 214 914 106 HOH HOH . L 8 HOH A 215 915 244 HOH HOH . L 8 HOH A 216 916 143 HOH HOH . L 8 HOH A 217 917 249 HOH HOH . L 8 HOH A 218 918 161 HOH HOH . L 8 HOH A 219 919 134 HOH HOH . L 8 HOH A 220 920 54 HOH HOH . L 8 HOH A 221 921 208 HOH HOH . L 8 HOH A 222 922 186 HOH HOH . L 8 HOH A 223 923 242 HOH HOH . L 8 HOH A 224 924 193 HOH HOH . L 8 HOH A 225 925 251 HOH HOH . L 8 HOH A 226 926 240 HOH HOH . L 8 HOH A 227 927 154 HOH HOH . L 8 HOH A 228 928 127 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id K _atom_site.label_entity_id 7 _atom_site.Cartn_x 30.632 _atom_site.Cartn_y 46.425 _atom_site.Cartn_z 17.399 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 39.27 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 609 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 42 _model_server_stats.query_time_ms 348 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #