data_7SP8 # _model_server_result.job_id 50LR0QFIQJvIavnONddUwQ _model_server_result.datetime_utc '2024-11-21 14:18:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7sp8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":603}' # _entry.id 7SP8 # _exptl.entry_id 7SP8 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7SP8 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7SP8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 22 B CYS 22 1_555 B SG CYS 95 B CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 C SG CYS 22 C CYS 22 1_555 C SG CYS 96 C CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc1 A OE2 GLU 94 A GLU 93 1_555 G MN MN . A MN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc2 A OD2 ASP 204 A ASP 203 1_555 G MN MN . A MN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? metalc ? metalc3 A OD2 ASP 204 A ASP 203 1_555 H MN MN . A MN 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc4 D O2B UD1 . A UD1 601 1_555 H MN MN . A MN 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc5 G MN MN . A MN 604 1_555 H MN MN . A MN 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.991 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CBA Y01 sing 574 n n CBA CAB Y01 sing 575 n n CBA CAN Y01 sing 576 n n CAN CAJ Y01 sing 577 n n CAJ CAO Y01 sing 578 n n CAO CBB Y01 sing 579 n n CBB CAC Y01 sing 580 n n CBB CBE Y01 sing 581 n n CBE CAP Y01 sing 582 n n CBE CBI Y01 sing 583 n n CAP CAQ Y01 sing 584 n n CAQ CBG Y01 sing 585 n n CBG CBI Y01 sing 586 n n CBG CBD Y01 sing 587 n n CBI CAE Y01 sing 588 n n CBI CAU Y01 sing 589 n n CAU CAS Y01 sing 590 n n CAS CBF Y01 sing 591 n n CBF CBD Y01 sing 592 n n CBF CBH Y01 sing 593 n n CBD CAK Y01 sing 594 n n CAK CAI Y01 sing 595 n n CAI CAZ Y01 doub 596 n n CAZ CAV Y01 sing 597 n n CAZ CBH Y01 sing 598 n n CAV CBC Y01 sing 599 n n CBH CAD Y01 sing 600 n n CBH CAT Y01 sing 601 n n CAT CAR Y01 sing 602 n n CAR CBC Y01 sing 603 n n CBC OAW Y01 sing 604 n n OAW CAY Y01 sing 605 n n CAY OAG Y01 doub 606 n n CAY CAM Y01 sing 607 n n CAM CAL Y01 sing 608 n n CAL CAX Y01 sing 609 n n CAX OAH Y01 sing 610 n n CAX OAF Y01 doub 611 n n CAA HAA1 Y01 sing 612 n n CAA HAA2 Y01 sing 613 n n CAA HAA3 Y01 sing 614 n n CBA HBA Y01 sing 615 n n CAB HAB1 Y01 sing 616 n n CAB HAB2 Y01 sing 617 n n CAB HAB3 Y01 sing 618 n n CAN HAN1 Y01 sing 619 n n CAN HAN2 Y01 sing 620 n n CAJ HAJ1 Y01 sing 621 n n CAJ HAJ2 Y01 sing 622 n n CAO HAO1 Y01 sing 623 n n CAO HAO2 Y01 sing 624 n n CBB HBB Y01 sing 625 n n CAC HAC1 Y01 sing 626 n n CAC HAC2 Y01 sing 627 n n CAC HAC3 Y01 sing 628 n n CBE HBE Y01 sing 629 n n CAP HAP1 Y01 sing 630 n n CAP HAP2 Y01 sing 631 n n CAQ HAQ1 Y01 sing 632 n n CAQ HAQ2 Y01 sing 633 n n CBG HBG Y01 sing 634 n n CBD HBD Y01 sing 635 n n CAE HAE1 Y01 sing 636 n n CAE HAE2 Y01 sing 637 n n CAE HAE3 Y01 sing 638 n n CAU HAU1 Y01 sing 639 n n CAU HAU2 Y01 sing 640 n n CAS HAS1 Y01 sing 641 n n CAS HAS2 Y01 sing 642 n n CBF HBF Y01 sing 643 n n CAK HAK1 Y01 sing 644 n n CAK HAK2 Y01 sing 645 n n CAI HAI Y01 sing 646 n n CAV HAV1 Y01 sing 647 n n CAV HAV2 Y01 sing 648 n n CBC HBC Y01 sing 649 n n CAD HAD1 Y01 sing 650 n n CAD HAD2 Y01 sing 651 n n CAD HAD3 Y01 sing 652 n n CAT HAT1 Y01 sing 653 n n CAT HAT2 Y01 sing 654 n n CAR HAR1 Y01 sing 655 n n CAR HAR2 Y01 sing 656 n n CAM HAM1 Y01 sing 657 n n CAM HAM2 Y01 sing 658 n n CAL HAL1 Y01 sing 659 n n CAL HAL2 Y01 sing 660 n n OAH HAH Y01 sing 661 n n # _atom_sites.entry_id 7SP8 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 UD1 A 1 601 601 UD1 UD1 . E 5 3PE A 1 602 605 3PE 3PE . F 6 Y01 A 1 603 606 Y01 CHO . G 7 MN A 1 604 1 MN MN . H 7 MN A 1 605 2 MN MN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . F 6 123.182 134.725 121.143 1 76.49 ? CAA Y01 603 A 1 HETATM 2 C CBA Y01 . . . F 6 124.061 135.804 120.483 1 76.49 ? CBA Y01 603 A 1 HETATM 3 C CAB Y01 . . . F 6 123.761 135.839 118.97 1 76.49 ? CAB Y01 603 A 1 HETATM 4 C CAN Y01 . . . F 6 125.591 135.623 120.803 1 76.49 ? CAN Y01 603 A 1 HETATM 5 C CAJ Y01 . . . F 6 126.272 136.765 121.638 1 76.49 ? CAJ Y01 603 A 1 HETATM 6 C CAO Y01 . . . F 6 127.822 136.664 121.894 1 76.49 ? CAO Y01 603 A 1 HETATM 7 C CBB Y01 . . . F 6 128.421 137.545 123.072 1 76.49 ? CBB Y01 603 A 1 HETATM 8 C CAC Y01 . . . F 6 127.303 137.975 124.045 1 76.49 ? CAC Y01 603 A 1 HETATM 9 C CBE Y01 . . . F 6 129.605 136.872 123.904 1 76.49 ? CBE Y01 603 A 1 HETATM 10 C CAP Y01 . . . F 6 130.578 136.04 123.043 1 76.49 ? CAP Y01 603 A 1 HETATM 11 C CAQ Y01 . . . F 6 131.978 136.086 123.75 1 76.49 ? CAQ Y01 603 A 1 HETATM 12 C CBG Y01 . . . F 6 131.923 137.041 124.999 1 76.49 ? CBG Y01 603 A 1 HETATM 13 C CBI Y01 . . . F 6 130.641 137.88 124.612 1 76.49 ? CBI Y01 603 A 1 HETATM 14 C CAE Y01 . . . F 6 130.98 138.91 123.544 1 76.49 ? CAE Y01 603 A 1 HETATM 15 C CAU Y01 . . . F 6 130.243 138.715 125.833 1 76.49 ? CAU Y01 603 A 1 HETATM 16 C CAS Y01 . . . F 6 131.394 139.676 126.289 1 76.49 ? CAS Y01 603 A 1 HETATM 17 C CBF Y01 . . . F 6 132.753 138.993 126.645 1 76.49 ? CBF Y01 603 A 1 HETATM 18 C CBD Y01 . . . F 6 133.17 137.991 125.493 1 76.49 ? CBD Y01 603 A 1 HETATM 19 C CAK Y01 . . . F 6 134.508 137.263 125.893 1 76.49 ? CAK Y01 603 A 1 HETATM 20 C CAI Y01 . . . F 6 135.508 138.138 126.728 1 76.49 ? CAI Y01 603 A 1 HETATM 21 C CAZ Y01 . . . F 6 135.322 139.319 127.263 1 76.49 ? CAZ Y01 603 A 1 HETATM 22 C CAV Y01 . . . F 6 136.295 140.269 128.128 1 76.49 ? CAV Y01 603 A 1 HETATM 23 C CBH Y01 . . . F 6 133.945 140.028 127.087 1 76.49 ? CBH Y01 603 A 1 HETATM 24 C CAD Y01 . . . F 6 134.218 140.962 125.897 1 76.49 ? CAD Y01 603 A 1 HETATM 25 C CAT Y01 . . . F 6 133.508 140.956 128.287 1 76.49 ? CAT Y01 603 A 1 HETATM 26 C CAR Y01 . . . F 6 134.568 141.925 128.894 1 76.49 ? CAR Y01 603 A 1 HETATM 27 C CBC Y01 . . . F 6 135.778 141.11 129.403 1 76.49 ? CBC Y01 603 A 1 HETATM 28 O OAW Y01 . . . F 6 136.755 142.022 130.012 1 76.49 ? OAW Y01 603 A 1 HETATM 29 C CAY Y01 . . . F 6 137.62 141.582 131.056 1 76.49 ? CAY Y01 603 A 1 HETATM 30 O OAG Y01 . . . F 6 138.22 140.558 130.838 1 76.49 ? OAG Y01 603 A 1 HETATM 31 C CAM Y01 . . . F 6 137.813 142.337 132.435 1 76.49 ? CAM Y01 603 A 1 HETATM 32 C CAL Y01 . . . F 6 138.843 141.692 133.406 1 76.49 ? CAL Y01 603 A 1 HETATM 33 C CAX Y01 . . . F 6 138.86 142.272 134.902 1 76.49 ? CAX Y01 603 A 1 HETATM 34 O OAH Y01 . . . F 6 138.21 141.657 135.777 1 76.49 ? OAH Y01 603 A 1 HETATM 35 O OAF Y01 . . . F 6 139.523 143.312 135.116 1 76.49 ? OAF Y01 603 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 35 #