data_7SPF # _model_server_result.job_id zJFVBdJJkTZCFA89tP3UjA _model_server_result.datetime_utc '2024-10-16 15:21:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7spf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 7SPF # _exptl.entry_id 7SPF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7SPF _cell.length_a 42.408 _cell.length_b 55.985 _cell.length_c 65.855 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7SPF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 5 A GLU 4 1_555 A N A3U 6 A A3U 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 A C A3U 6 A A3U 5 1_555 A N GLU 7 A GLU 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale3 A C2 A3U 6 A A3U 5 1_555 A SG CYS 127 A CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.771 ? metalc ? metalc1 A NE2 HIS 94 A HIS 93 1_555 C FE HEM . A HEM 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc2 C FE HEM . A HEM 202 1_555 D O2 OXY . A OXY 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 159 n n CHA C4D HEM doub 160 n n CHA HHA HEM sing 161 n n CHB C4A HEM sing 162 n n CHB C1B HEM doub 163 n n CHB HHB HEM sing 164 n n CHC C4B HEM sing 165 n n CHC C1C HEM doub 166 n n CHC HHC HEM sing 167 n n CHD C4C HEM doub 168 n n CHD C1D HEM sing 169 n n CHD HHD HEM sing 170 n n C1A C2A HEM doub 171 n y C1A NA HEM sing 172 n y C2A C3A HEM sing 173 n y C2A CAA HEM sing 174 n n C3A C4A HEM doub 175 n y C3A CMA HEM sing 176 n n C4A NA HEM sing 177 n y CMA HMA HEM sing 178 n n CMA HMAA HEM sing 179 n n CMA HMAB HEM sing 180 n n CAA CBA HEM sing 181 n n CAA HAA HEM sing 182 n n CAA HAAA HEM sing 183 n n CBA CGA HEM sing 184 n n CBA HBA HEM sing 185 n n CBA HBAA HEM sing 186 n n CGA O1A HEM doub 187 n n CGA O2A HEM sing 188 n n C1B C2B HEM sing 189 n n C1B NB HEM sing 190 n n C2B C3B HEM doub 191 n n C2B CMB HEM sing 192 n n C3B C4B HEM sing 193 n n C3B CAB HEM sing 194 n n C4B NB HEM doub 195 n n CMB HMB HEM sing 196 n n CMB HMBA HEM sing 197 n n CMB HMBB HEM sing 198 n n CAB CBB HEM doub 199 n n CAB HAB HEM sing 200 n n CBB HBB HEM sing 201 n n CBB HBBA HEM sing 202 n n C1C C2C HEM sing 203 n y C1C NC HEM sing 204 n y C2C C3C HEM doub 205 n y C2C CMC HEM sing 206 n n C3C C4C HEM sing 207 n y C3C CAC HEM sing 208 n n C4C NC HEM sing 209 n y CMC HMC HEM sing 210 n n CMC HMCA HEM sing 211 n n CMC HMCB HEM sing 212 n n CAC CBC HEM doub 213 n n CAC HAC HEM sing 214 n n CBC HBC HEM sing 215 n n CBC HBCA HEM sing 216 n n C1D C2D HEM sing 217 n n C1D ND HEM doub 218 n n C2D C3D HEM doub 219 n n C2D CMD HEM sing 220 n n C3D C4D HEM sing 221 n n C3D CAD HEM sing 222 n n C4D ND HEM sing 223 n n CMD HMD HEM sing 224 n n CMD HMDA HEM sing 225 n n CMD HMDB HEM sing 226 n n CAD CBD HEM sing 227 n n CAD HAD HEM sing 228 n n CAD HADA HEM sing 229 n n CBD CGD HEM sing 230 n n CBD HBD HEM sing 231 n n CBD HBDA HEM sing 232 n n CGD O1D HEM doub 233 n n CGD O2D HEM sing 234 n n O2A H2A HEM sing 235 n n O2D H2D HEM sing 236 n n FE NA HEM sing 237 n n FE NB HEM sing 238 n n FE NC HEM sing 239 n n FE ND HEM sing 240 n n # _atom_sites.entry_id 7SPF _atom_sites.fract_transf_matrix[1][1] 0.02358 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017862 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015185 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NO3 A 1 201 201 NO3 NO3 . C 3 HEM A 1 202 1 HEM HEM . D 4 OXY A 1 203 101 OXY OXY . E 5 SO4 A 1 204 3 SO4 SO4 . F 5 SO4 A 1 205 4 SO4 SO4 . G 5 SO4 A 1 206 5 SO4 SO4 . H 5 SO4 A 1 207 6 SO4 SO4 . I 5 SO4 A 1 208 7 SO4 SO4 . J 6 HOH A 1 301 59 HOH HOH . J 6 HOH A 2 302 99 HOH HOH . J 6 HOH A 3 303 44 HOH HOH . J 6 HOH A 4 304 121 HOH HOH . J 6 HOH A 5 305 28 HOH HOH . J 6 HOH A 6 306 108 HOH HOH . J 6 HOH A 7 307 75 HOH HOH . J 6 HOH A 8 308 25 HOH HOH . J 6 HOH A 9 309 21 HOH HOH . J 6 HOH A 10 310 14 HOH HOH . J 6 HOH A 11 311 18 HOH HOH . J 6 HOH A 12 312 5 HOH HOH . J 6 HOH A 13 313 84 HOH HOH . J 6 HOH A 14 314 45 HOH HOH . J 6 HOH A 15 315 116 HOH HOH . J 6 HOH A 16 316 79 HOH HOH . J 6 HOH A 17 317 2 HOH HOH . J 6 HOH A 18 318 20 HOH HOH . J 6 HOH A 19 319 63 HOH HOH . J 6 HOH A 20 320 4 HOH HOH . J 6 HOH A 21 321 66 HOH HOH . J 6 HOH A 22 322 62 HOH HOH . J 6 HOH A 23 323 51 HOH HOH . J 6 HOH A 24 324 102 HOH HOH . J 6 HOH A 25 325 57 HOH HOH . J 6 HOH A 26 326 26 HOH HOH . J 6 HOH A 27 327 119 HOH HOH . J 6 HOH A 28 328 6 HOH HOH . J 6 HOH A 29 329 32 HOH HOH . J 6 HOH A 30 330 1 HOH HOH . J 6 HOH A 31 331 22 HOH HOH . J 6 HOH A 32 332 16 HOH HOH . J 6 HOH A 33 333 89 HOH HOH . J 6 HOH A 34 334 3 HOH HOH . J 6 HOH A 35 335 82 HOH HOH . J 6 HOH A 36 336 52 HOH HOH . J 6 HOH A 37 337 114 HOH HOH . J 6 HOH A 38 338 13 HOH HOH . J 6 HOH A 39 339 56 HOH HOH . J 6 HOH A 40 340 38 HOH HOH . J 6 HOH A 41 341 30 HOH HOH . J 6 HOH A 42 342 27 HOH HOH . J 6 HOH A 43 343 61 HOH HOH . J 6 HOH A 44 344 46 HOH HOH . J 6 HOH A 45 345 43 HOH HOH . J 6 HOH A 46 346 115 HOH HOH . J 6 HOH A 47 347 80 HOH HOH . J 6 HOH A 48 348 9 HOH HOH . J 6 HOH A 49 349 23 HOH HOH . J 6 HOH A 50 350 94 HOH HOH . J 6 HOH A 51 351 33 HOH HOH . J 6 HOH A 52 352 35 HOH HOH . J 6 HOH A 53 353 53 HOH HOH . J 6 HOH A 54 354 85 HOH HOH . J 6 HOH A 55 355 42 HOH HOH . J 6 HOH A 56 356 120 HOH HOH . J 6 HOH A 57 357 15 HOH HOH . J 6 HOH A 58 358 10 HOH HOH . J 6 HOH A 59 359 98 HOH HOH . J 6 HOH A 60 360 118 HOH HOH . J 6 HOH A 61 361 7 HOH HOH . J 6 HOH A 62 362 48 HOH HOH . J 6 HOH A 63 363 97 HOH HOH . J 6 HOH A 64 364 122 HOH HOH . J 6 HOH A 65 365 77 HOH HOH . J 6 HOH A 66 366 19 HOH HOH . J 6 HOH A 67 367 72 HOH HOH . J 6 HOH A 68 368 12 HOH HOH . J 6 HOH A 69 369 39 HOH HOH . J 6 HOH A 70 370 36 HOH HOH . J 6 HOH A 71 371 17 HOH HOH . J 6 HOH A 72 372 95 HOH HOH . J 6 HOH A 73 373 70 HOH HOH . J 6 HOH A 74 374 55 HOH HOH . J 6 HOH A 75 375 37 HOH HOH . J 6 HOH A 76 376 40 HOH HOH . J 6 HOH A 77 377 29 HOH HOH . J 6 HOH A 78 378 24 HOH HOH . J 6 HOH A 79 379 47 HOH HOH . J 6 HOH A 80 380 8 HOH HOH . J 6 HOH A 81 381 31 HOH HOH . J 6 HOH A 82 382 113 HOH HOH . J 6 HOH A 83 383 109 HOH HOH . J 6 HOH A 84 384 49 HOH HOH . J 6 HOH A 85 385 117 HOH HOH . J 6 HOH A 86 386 106 HOH HOH . J 6 HOH A 87 387 34 HOH HOH . J 6 HOH A 88 388 111 HOH HOH . J 6 HOH A 89 389 74 HOH HOH . J 6 HOH A 90 390 54 HOH HOH . J 6 HOH A 91 391 110 HOH HOH . J 6 HOH A 92 392 112 HOH HOH . J 6 HOH A 93 393 11 HOH HOH . J 6 HOH A 94 394 107 HOH HOH . J 6 HOH A 95 395 65 HOH HOH . J 6 HOH A 96 396 93 HOH HOH . J 6 HOH A 97 397 100 HOH HOH . J 6 HOH A 98 398 92 HOH HOH . J 6 HOH A 99 399 69 HOH HOH . J 6 HOH A 100 400 101 HOH HOH . J 6 HOH A 101 401 71 HOH HOH . J 6 HOH A 102 402 78 HOH HOH . J 6 HOH A 103 403 41 HOH HOH . J 6 HOH A 104 404 88 HOH HOH . J 6 HOH A 105 405 50 HOH HOH . J 6 HOH A 106 406 76 HOH HOH . J 6 HOH A 107 407 60 HOH HOH . J 6 HOH A 108 408 73 HOH HOH . J 6 HOH A 109 409 83 HOH HOH . J 6 HOH A 110 410 67 HOH HOH . J 6 HOH A 111 411 90 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . C 3 -13.739 9.413 6.165 1 10.51 ? CHA HEM 202 A 1 HETATM 2 C CHB HEM . . . C 3 -16.039 5.828 8.426 1 9.98 ? CHB HEM 202 A 1 HETATM 3 C CHC HEM . . . C 3 -14.667 2.742 4.967 1 10.01 ? CHC HEM 202 A 1 HETATM 4 C CHD HEM . . . C 3 -12.444 6.349 2.665 1 9.99 ? CHD HEM 202 A 1 HETATM 5 C C1A HEM . . . C 3 -14.544 8.747 7.05 1 10.5 ? C1A HEM 202 A 1 HETATM 6 C C2A HEM . . . C 3 -15.204 9.298 8.195 1 11.13 ? C2A HEM 202 A 1 HETATM 7 C C3A HEM . . . C 3 -15.794 8.288 8.841 1 11.11 ? C3A HEM 202 A 1 HETATM 8 C C4A HEM . . . C 3 -15.572 7.074 8.101 1 10.45 ? C4A HEM 202 A 1 HETATM 9 C CMA HEM . . . C 3 -16.601 8.376 10.149 1 12.73 ? CMA HEM 202 A 1 HETATM 10 C CAA HEM . . . C 3 -15.209 10.774 8.588 1 11.81 ? CAA HEM 202 A 1 HETATM 11 C CBA HEM . . . C 3 -16.607 11.42 8.336 1 12.41 ? CBA HEM 202 A 1 HETATM 12 C CGA HEM . . . C 3 -17.084 11.268 6.925 1 13.22 ? CGA HEM 202 A 1 HETATM 13 O O1A HEM . . . C 3 -16.398 11.765 6.002 1 14.4 ? O1A HEM 202 A 1 HETATM 14 O O2A HEM . . . C 3 -18.149 10.661 6.684 1 14.59 ? O2A HEM 202 A 1 HETATM 15 C C1B HEM . . . C 3 -15.872 4.671 7.698 1 9.72 ? C1B HEM 202 A 1 HETATM 16 C C2B HEM . . . C 3 -16.318 3.361 8.092 1 10.11 ? C2B HEM 202 A 1 HETATM 17 C C3B HEM . . . C 3 -15.927 2.503 7.131 1 10.41 ? C3B HEM 202 A 1 HETATM 18 C C4B HEM . . . C 3 -15.245 3.273 6.119 1 9.69 ? C4B HEM 202 A 1 HETATM 19 C CMB HEM . . . C 3 -17.115 3.11 9.356 1 11.49 ? CMB HEM 202 A 1 HETATM 20 C CAB HEM . . . C 3 -16.098 0.997 7.052 1 11.41 ? CAB HEM 202 A 1 HETATM 21 C CBB HEM . . . C 3 -16.014 0.203 8.113 1 12.63 ? CBB HEM 202 A 1 HETATM 22 C C1C HEM . . . C 3 -13.94 3.455 4.031 1 10.02 ? C1C HEM 202 A 1 HETATM 23 C C2C HEM . . . C 3 -13.218 2.856 2.931 1 10.15 ? C2C HEM 202 A 1 HETATM 24 C C3C HEM . . . C 3 -12.589 3.866 2.283 1 9.85 ? C3C HEM 202 A 1 HETATM 25 C C4C HEM . . . C 3 -12.901 5.097 2.975 1 9.79 ? C4C HEM 202 A 1 HETATM 26 C CMC HEM . . . C 3 -13.2 1.376 2.589 1 11.9 ? CMC HEM 202 A 1 HETATM 27 C CAC HEM . . . C 3 -11.633 3.827 1.112 1 10.8 ? CAC HEM 202 A 1 HETATM 28 C CBC HEM . . . C 3 -11.193 2.746 0.459 1 11.5 ? CBC HEM 202 A 1 HETATM 29 C C1D HEM . . . C 3 -12.58 7.491 3.413 1 9.9 ? C1D HEM 202 A 1 HETATM 30 C C2D HEM . . . C 3 -11.881 8.736 3.18 1 10.19 ? C2D HEM 202 A 1 HETATM 31 C C3D HEM . . . C 3 -12.209 9.556 4.184 1 10.52 ? C3D HEM 202 A 1 HETATM 32 C C4D HEM . . . C 3 -13.131 8.857 5.063 1 10.37 ? C4D HEM 202 A 1 HETATM 33 C CMD HEM . . . C 3 -10.941 8.987 2.001 1 11.32 ? CMD HEM 202 A 1 HETATM 34 C CAD HEM . . . C 3 -11.609 10.941 4.491 1 11.71 ? CAD HEM 202 A 1 HETATM 35 C CBD HEM . . . C 3 -10.337 10.65 5.346 1 12.11 ? CBD HEM 202 A 1 HETATM 36 C CGD HEM . . . C 3 -9.551 11.881 5.682 1 13.66 ? CGD HEM 202 A 1 HETATM 37 O O1D HEM . . . C 3 -10.105 12.856 6.25 1 17.02 ? O1D HEM 202 A 1 HETATM 38 O O2D HEM . . . C 3 -8.353 12.012 5.383 1 14.16 ? O2D HEM 202 A 1 HETATM 39 N NA HEM . . . C 3 -14.827 7.386 6.986 1 10.16 ? NA HEM 202 A 1 HETATM 40 N NB HEM . . . C 3 -15.202 4.597 6.497 1 9.8 ? NB HEM 202 A 1 HETATM 41 N NC HEM . . . C 3 -13.724 4.837 4.055 1 9.87 ? NC HEM 202 A 1 HETATM 42 N ND HEM . . . C 3 -13.33 7.601 4.57 1 9.94 ? ND HEM 202 A 1 HETATM 43 FE FE HEM . . . C 3 -14.383 6.12 5.459 1 9.74 ? FE HEM 202 A 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #