data_7SPP # _model_server_result.job_id bU2vQnteaJsWYI1hoLMhRg _model_server_result.datetime_utc '2024-11-21 10:19:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7spp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":603}' # _entry.id 7SPP # _exptl.entry_id 7SPP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7SPP _cell.length_a 61.448 _cell.length_b 74.229 _cell.length_c 75.456 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7SPP _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall 'P 2 2ab (y,z,x)' _symmetry.space_group_name_H-M 'P 21 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 18 A CYS 336 1_555 A SG CYS 43 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? disulf ? disulf2 A SG CYS 61 A CYS 379 1_555 A SG CYS 114 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? disulf ? disulf3 A SG CYS 73 A CYS 391 1_555 A SG CYS 207 A CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf4 A SG CYS 162 A CYS 480 1_555 A SG CYS 170 A CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf5 B SG CYS 23 C CYS 41 1_555 B SG CYS 84 C CYS 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf6 B SG CYS 30 C CYS 48 1_555 B SG CYS 94 C CYS 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? covale ? covale1 A ND2 ASN 25 A ASN 343 1_555 D C1 NAG . A NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.468 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 7SPP _atom_sites.fract_transf_matrix[1][1] 0.016274 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013472 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013253 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 EDO A 1 601 601 EDO EDO . D 4 NAG A 1 602 602 NAG NAG . E 3 EDO A 1 603 1 EDO EDO . F 5 CL C 1 201 1 CL CL . G 6 HOH A 1 701 122 HOH HOH . G 6 HOH A 2 702 32 HOH HOH . G 6 HOH A 3 703 51 HOH HOH . G 6 HOH A 4 704 121 HOH HOH . G 6 HOH A 5 705 45 HOH HOH . G 6 HOH A 6 706 125 HOH HOH . G 6 HOH A 7 707 76 HOH HOH . G 6 HOH A 8 708 49 HOH HOH . G 6 HOH A 9 709 25 HOH HOH . G 6 HOH A 10 710 50 HOH HOH . G 6 HOH A 11 711 91 HOH HOH . G 6 HOH A 12 712 68 HOH HOH . G 6 HOH A 13 713 1 HOH HOH . G 6 HOH A 14 714 28 HOH HOH . G 6 HOH A 15 715 41 HOH HOH . G 6 HOH A 16 716 74 HOH HOH . G 6 HOH A 17 717 52 HOH HOH . G 6 HOH A 18 718 97 HOH HOH . G 6 HOH A 19 719 20 HOH HOH . G 6 HOH A 20 720 26 HOH HOH . G 6 HOH A 21 721 4 HOH HOH . G 6 HOH A 22 722 116 HOH HOH . G 6 HOH A 23 723 11 HOH HOH . G 6 HOH A 24 724 59 HOH HOH . G 6 HOH A 25 725 14 HOH HOH . G 6 HOH A 26 726 12 HOH HOH . G 6 HOH A 27 727 98 HOH HOH . G 6 HOH A 28 728 39 HOH HOH . G 6 HOH A 29 729 33 HOH HOH . G 6 HOH A 30 730 23 HOH HOH . G 6 HOH A 31 731 24 HOH HOH . G 6 HOH A 32 732 79 HOH HOH . G 6 HOH A 33 733 61 HOH HOH . G 6 HOH A 34 734 44 HOH HOH . G 6 HOH A 35 735 15 HOH HOH . G 6 HOH A 36 736 70 HOH HOH . G 6 HOH A 37 737 35 HOH HOH . G 6 HOH A 38 738 78 HOH HOH . G 6 HOH A 39 739 6 HOH HOH . G 6 HOH A 40 740 31 HOH HOH . G 6 HOH A 41 741 56 HOH HOH . G 6 HOH A 42 742 47 HOH HOH . G 6 HOH A 43 743 93 HOH HOH . G 6 HOH A 44 744 66 HOH HOH . G 6 HOH A 45 745 30 HOH HOH . G 6 HOH A 46 746 53 HOH HOH . G 6 HOH A 47 747 3 HOH HOH . G 6 HOH A 48 748 19 HOH HOH . G 6 HOH A 49 749 64 HOH HOH . G 6 HOH A 50 750 65 HOH HOH . G 6 HOH A 51 751 22 HOH HOH . G 6 HOH A 52 752 114 HOH HOH . G 6 HOH A 53 753 17 HOH HOH . G 6 HOH A 54 754 106 HOH HOH . G 6 HOH A 55 755 18 HOH HOH . G 6 HOH A 56 756 62 HOH HOH . G 6 HOH A 57 757 46 HOH HOH . G 6 HOH A 58 758 83 HOH HOH . G 6 HOH A 59 759 8 HOH HOH . G 6 HOH A 60 760 80 HOH HOH . G 6 HOH A 61 761 88 HOH HOH . G 6 HOH A 62 762 40 HOH HOH . G 6 HOH A 63 763 84 HOH HOH . G 6 HOH A 64 764 43 HOH HOH . G 6 HOH A 65 765 118 HOH HOH . G 6 HOH A 66 766 5 HOH HOH . G 6 HOH A 67 767 77 HOH HOH . G 6 HOH A 68 768 63 HOH HOH . G 6 HOH A 69 769 36 HOH HOH . G 6 HOH A 70 770 126 HOH HOH . G 6 HOH A 71 771 42 HOH HOH . G 6 HOH A 72 772 99 HOH HOH . G 6 HOH A 73 773 112 HOH HOH . G 6 HOH A 74 774 27 HOH HOH . G 6 HOH A 75 775 85 HOH HOH . G 6 HOH A 76 776 109 HOH HOH . G 6 HOH A 77 777 120 HOH HOH . G 6 HOH A 78 778 2 HOH HOH . G 6 HOH A 79 779 54 HOH HOH . G 6 HOH A 80 780 86 HOH HOH . G 6 HOH A 81 781 117 HOH HOH . G 6 HOH A 82 782 87 HOH HOH . G 6 HOH A 83 783 110 HOH HOH . G 6 HOH A 84 784 124 HOH HOH . G 6 HOH A 85 785 92 HOH HOH . G 6 HOH A 86 786 90 HOH HOH . G 6 HOH A 87 787 115 HOH HOH . G 6 HOH A 88 788 123 HOH HOH . G 6 HOH A 89 789 75 HOH HOH . G 6 HOH A 90 790 69 HOH HOH . G 6 HOH A 91 791 130 HOH HOH . G 6 HOH A 92 792 67 HOH HOH . G 6 HOH A 93 793 107 HOH HOH . G 6 HOH A 94 794 101 HOH HOH . H 6 HOH C 1 301 29 HOH HOH . H 6 HOH C 2 302 81 HOH HOH . H 6 HOH C 3 303 55 HOH HOH . H 6 HOH C 4 304 119 HOH HOH . H 6 HOH C 5 305 95 HOH HOH . H 6 HOH C 6 306 71 HOH HOH . H 6 HOH C 7 307 37 HOH HOH . H 6 HOH C 8 308 9 HOH HOH . H 6 HOH C 9 309 13 HOH HOH . H 6 HOH C 10 310 60 HOH HOH . H 6 HOH C 11 311 73 HOH HOH . H 6 HOH C 12 312 34 HOH HOH . H 6 HOH C 13 313 102 HOH HOH . H 6 HOH C 14 314 72 HOH HOH . H 6 HOH C 15 315 100 HOH HOH . H 6 HOH C 16 316 96 HOH HOH . H 6 HOH C 17 317 7 HOH HOH . H 6 HOH C 18 318 129 HOH HOH . H 6 HOH C 19 319 21 HOH HOH . H 6 HOH C 20 320 82 HOH HOH . H 6 HOH C 21 321 38 HOH HOH . H 6 HOH C 22 322 57 HOH HOH . H 6 HOH C 23 323 128 HOH HOH . H 6 HOH C 24 324 94 HOH HOH . H 6 HOH C 25 325 105 HOH HOH . H 6 HOH C 26 326 103 HOH HOH . H 6 HOH C 27 327 108 HOH HOH . H 6 HOH C 28 328 10 HOH HOH . H 6 HOH C 29 329 16 HOH HOH . H 6 HOH C 30 330 104 HOH HOH . H 6 HOH C 31 331 58 HOH HOH . H 6 HOH C 32 332 89 HOH HOH . H 6 HOH C 33 333 127 HOH HOH . H 6 HOH C 34 334 111 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 3 8.541 31.383 -2.692 1 86.07 ? C1 EDO 603 A 1 HETATM 2 O O1 EDO . . . E 3 9.557 32.341 -2.352 1 90.73 ? O1 EDO 603 A 1 HETATM 3 C C2 EDO . . . E 3 8.402 31.262 -4.206 1 85.12 ? C2 EDO 603 A 1 HETATM 4 O O2 EDO . . . E 3 9.595 30.687 -4.749 1 87.61 ? O2 EDO 603 A 1 HETATM 5 H H11 EDO . . . E 3 8.799 30.41 -2.269 1 103.32 ? H11 EDO 603 A 1 HETATM 6 H H12 EDO . . . E 3 7.587 31.694 -2.261 1 103.32 ? H12 EDO 603 A 1 HETATM 7 H HO1 EDO . . . E 3 9.665 32.369 -1.392 1 108.91 ? HO1 EDO 603 A 1 HETATM 8 H H21 EDO . . . E 3 7.542 30.634 -4.45 1 102.18 ? H21 EDO 603 A 1 HETATM 9 H H22 EDO . . . E 3 8.232 32.248 -4.643 1 102.18 ? H22 EDO 603 A 1 HETATM 10 H HO2 EDO . . . E 3 9.552 30.707 -5.715 1 105.17 ? HO2 EDO 603 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 99 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 1160 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 10 #