data_7SPV # _model_server_result.job_id PLJGIjT84Wv50z5iS-B4og _model_server_result.datetime_utc '2024-11-16 20:53:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7spv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 7SPV # _exptl.entry_id 7SPV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 164.158 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "4'-HYDROXYCINNAMIC ACID" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7SPV _cell.length_a 40.877 _cell.length_b 40.877 _cell.length_c 117.486 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7SPV _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 69 A CYS 69 1_555 B C1 HC4 . A HC4 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.762 ? covale ? covale2 A C MET 91 A MET 91 1_555 A N 9IJ 92 A 9IJ 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale3 A C 9IJ 92 A 9IJ 92 1_555 A N GLU 93 A GLU 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? # _chem_comp.formula 'C9 H8 O3' _chem_comp.formula_weight 164.158 _chem_comp.id HC4 _chem_comp.mon_nstd_flag . _chem_comp.name "4'-HYDROXYCINNAMIC ACID" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'PARA-COUMARIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 HC4 doub 153 n n C1 O2 HC4 sing 154 n n C1 C2 HC4 sing 155 n n O2 HO2 HC4 sing 156 n n C2 C3 HC4 doub 157 e n C2 H2 HC4 sing 158 n n C3 C1' HC4 sing 159 n n C3 H3 HC4 sing 160 n n C1' C2' HC4 doub 161 n y C1' C6' HC4 sing 162 n y C2' C3' HC4 sing 163 n y C2' H2' HC4 sing 164 n n C3' C4' HC4 doub 165 n y C3' H3' HC4 sing 166 n n C4' C5' HC4 sing 167 n y C4' O4' HC4 sing 168 n n C5' C6' HC4 doub 169 n y C5' H5' HC4 sing 170 n n C6' H6' HC4 sing 171 n n O4' HO4' HC4 sing 172 n n # _atom_sites.entry_id 7SPV _atom_sites.fract_transf_matrix[1][1] 0.024463 _atom_sites.fract_transf_matrix[1][2] 0.014124 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.028248 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008512 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HC4 A 1 201 201 HC4 HC4 . C 3 HOH A 1 301 301 HOH HOH . C 3 HOH A 2 302 302 HOH HOH . C 3 HOH A 3 303 303 HOH HOH . C 3 HOH A 4 304 304 HOH HOH . C 3 HOH A 5 305 305 HOH HOH . C 3 HOH A 6 306 306 HOH HOH . C 3 HOH A 7 307 307 HOH HOH . C 3 HOH A 8 308 308 HOH HOH . C 3 HOH A 9 309 309 HOH HOH . C 3 HOH A 10 310 310 HOH HOH . C 3 HOH A 11 311 311 HOH HOH . C 3 HOH A 12 312 312 HOH HOH . C 3 HOH A 13 313 313 HOH HOH . C 3 HOH A 14 314 314 HOH HOH . C 3 HOH A 15 315 315 HOH HOH . C 3 HOH A 16 316 316 HOH HOH . C 3 HOH A 17 317 317 HOH HOH . C 3 HOH A 18 318 318 HOH HOH . C 3 HOH A 19 319 319 HOH HOH . C 3 HOH A 20 320 320 HOH HOH . C 3 HOH A 21 321 321 HOH HOH . C 3 HOH A 22 322 322 HOH HOH . C 3 HOH A 23 323 323 HOH HOH . C 3 HOH A 24 324 324 HOH HOH . C 3 HOH A 25 325 325 HOH HOH . C 3 HOH A 26 326 326 HOH HOH . C 3 HOH A 27 327 327 HOH HOH . C 3 HOH A 28 328 328 HOH HOH . C 3 HOH A 29 329 329 HOH HOH . C 3 HOH A 30 330 330 HOH HOH . C 3 HOH A 31 331 331 HOH HOH . C 3 HOH A 32 332 332 HOH HOH . C 3 HOH A 33 333 333 HOH HOH . C 3 HOH A 34 334 334 HOH HOH . C 3 HOH A 35 335 335 HOH HOH . C 3 HOH A 36 336 336 HOH HOH . C 3 HOH A 37 337 337 HOH HOH . C 3 HOH A 38 338 338 HOH HOH . C 3 HOH A 39 339 339 HOH HOH . C 3 HOH A 40 340 340 HOH HOH . C 3 HOH A 41 341 341 HOH HOH . C 3 HOH A 42 342 342 HOH HOH . C 3 HOH A 43 343 343 HOH HOH . C 3 HOH A 44 344 344 HOH HOH . C 3 HOH A 45 345 345 HOH HOH . C 3 HOH A 46 346 346 HOH HOH . C 3 HOH A 47 347 347 HOH HOH . C 3 HOH A 48 348 348 HOH HOH . C 3 HOH A 49 349 349 HOH HOH . C 3 HOH A 50 350 350 HOH HOH . C 3 HOH A 51 351 351 HOH HOH . C 3 HOH A 52 352 352 HOH HOH . C 3 HOH A 53 353 353 HOH HOH . C 3 HOH A 54 354 354 HOH HOH . C 3 HOH A 55 355 355 HOH HOH . C 3 HOH A 56 356 356 HOH HOH . C 3 HOH A 57 357 357 HOH HOH . C 3 HOH A 58 358 358 HOH HOH . C 3 HOH A 59 359 359 HOH HOH . C 3 HOH A 60 360 360 HOH HOH . C 3 HOH A 61 361 361 HOH HOH . C 3 HOH A 62 362 362 HOH HOH . C 3 HOH A 63 363 363 HOH HOH . C 3 HOH A 64 364 364 HOH HOH . C 3 HOH A 65 365 365 HOH HOH . C 3 HOH A 66 366 366 HOH HOH . C 3 HOH A 67 367 367 HOH HOH . C 3 HOH A 68 368 368 HOH HOH . C 3 HOH A 69 369 369 HOH HOH . C 3 HOH A 70 370 370 HOH HOH . C 3 HOH A 71 371 371 HOH HOH . C 3 HOH A 72 372 372 HOH HOH . C 3 HOH A 73 373 373 HOH HOH . C 3 HOH A 74 374 374 HOH HOH . C 3 HOH A 75 375 375 HOH HOH . C 3 HOH A 76 376 376 HOH HOH . C 3 HOH A 77 377 377 HOH HOH . C 3 HOH A 78 378 378 HOH HOH . C 3 HOH A 79 379 379 HOH HOH . C 3 HOH A 80 380 380 HOH HOH . C 3 HOH A 81 381 381 HOH HOH . C 3 HOH A 82 382 382 HOH HOH . C 3 HOH A 83 383 383 HOH HOH . C 3 HOH A 84 384 384 HOH HOH . C 3 HOH A 85 385 385 HOH HOH . C 3 HOH A 86 386 411 HOH HOH . C 3 HOH A 87 387 386 HOH HOH . C 3 HOH A 88 388 387 HOH HOH . C 3 HOH A 89 389 388 HOH HOH . C 3 HOH A 90 390 389 HOH HOH . C 3 HOH A 91 391 390 HOH HOH . C 3 HOH A 92 392 391 HOH HOH . C 3 HOH A 93 393 392 HOH HOH . C 3 HOH A 94 394 393 HOH HOH . C 3 HOH A 95 395 394 HOH HOH . C 3 HOH A 96 396 395 HOH HOH . C 3 HOH A 97 397 396 HOH HOH . C 3 HOH A 98 398 397 HOH HOH . C 3 HOH A 99 399 398 HOH HOH . C 3 HOH A 100 400 399 HOH HOH . C 3 HOH A 101 401 400 HOH HOH . C 3 HOH A 102 402 401 HOH HOH . C 3 HOH A 103 403 402 HOH HOH . C 3 HOH A 104 404 410 HOH HOH . C 3 HOH A 105 405 403 HOH HOH . C 3 HOH A 106 406 404 HOH HOH . C 3 HOH A 107 407 405 HOH HOH . C 3 HOH A 108 408 406 HOH HOH . C 3 HOH A 109 409 407 HOH HOH . C 3 HOH A 110 410 408 HOH HOH . C 3 HOH A 111 411 409 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 HC4 . . . B 2 -28.875 2.644 -6.503 1 13.96 ? C1 HC4 201 A 1 HETATM 2 O O1 HC4 . . . B 2 -28.643 2.478 -5.276 1 15.5 ? O1 HC4 201 A 1 HETATM 3 C C2 HC4 . . . B 2 -28.39 3.823 -7.22 1 13.52 ? C2 HC4 201 A 1 HETATM 4 C C3 HC4 . . . B 2 -28.075 4.95 -6.572 1 12.89 ? C3 HC4 201 A 1 HETATM 5 C C1' HC4 . . . B 2 -27.446 6.125 -7.171 1 11.54 ? C1' HC4 201 A 1 HETATM 6 C C2' HC4 . . . B 2 -27.099 7.194 -6.365 1 12.45 ? C2' HC4 201 A 1 HETATM 7 C C3' HC4 . . . B 2 -26.425 8.278 -6.895 1 12.46 ? C3' HC4 201 A 1 HETATM 8 C C4' HC4 . . . B 2 -26.069 8.275 -8.269 1 12.25 ? C4' HC4 201 A 1 HETATM 9 C C5' HC4 . . . B 2 -26.392 7.201 -9.078 1 10.99 ? C5' HC4 201 A 1 HETATM 10 C C6' HC4 . . . B 2 -27.076 6.141 -8.523 1 11.71 ? C6' HC4 201 A 1 HETATM 11 O O4' HC4 . . . B 2 -25.423 9.326 -8.815 1 12.1 ? O4' HC4 201 A 1 # _model_server_stats.io_time_ms 73 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 11 #