data_7SPY # _model_server_result.job_id jPd1NgkCoEfpQG2c-EmrKA _model_server_result.datetime_utc '2024-12-19 04:04:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7spy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 7SPY # _exptl.entry_id 7SPY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7SPY _cell.length_a 79.646 _cell.length_b 79.646 _cell.length_c 130.07 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7SPY _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 x-y,-y,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 0 43.356667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 9 A HIS 6 1_555 E ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? metalc ? metalc2 A NE2 HIS 9 A HIS 6 1_555 E ZN ZN . A ZN 404 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? metalc ? metalc3 A OD1 ASP 13 A ASP 10 1_555 E ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.555 ? metalc ? metalc4 A OD2 ASP 13 A ASP 10 1_555 E ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc5 A OD1 ASP 13 A ASP 10 1_555 E ZN ZN . A ZN 404 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.555 ? metalc ? metalc6 A OD2 ASP 13 A ASP 10 1_555 E ZN ZN . A ZN 404 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc7 A OG1 THR 31 A THR 28 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc8 A SG CYS 290 A CYS 287 1_555 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc9 A SG CYS 290 A CYS 287 1_555 D ZN ZN . A ZN 403 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc10 A SG CYS 293 A CYS 290 1_555 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? metalc ? metalc11 A SG CYS 293 A CYS 290 1_555 D ZN ZN . A ZN 403 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? metalc ? metalc12 B O3G ATP . A ATP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? metalc ? metalc13 B O2B ATP . A ATP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc14 C MG MG . A MG 402 1_555 G O HOH . A HOH 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc15 C MG MG . A MG 402 1_555 G O HOH . A HOH 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc16 C MG MG . A MG 402 1_555 G O HOH . A HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7SPY _atom_sites.fract_transf_matrix[1][1] 0.012556 _atom_sites.fract_transf_matrix[1][2] 0.007249 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014498 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007688 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP A 1 401 401 ATP ATP . C 3 MG A 1 402 1 MG MG . D 4 ZN A 1 403 1 ZN ZN . E 4 ZN A 1 404 2 ZN ZN . F 5 SO4 A 1 405 1 SO4 SO4 . G 6 HOH A 1 501 159 HOH HOH . G 6 HOH A 2 502 107 HOH HOH . G 6 HOH A 3 503 187 HOH HOH . G 6 HOH A 4 504 118 HOH HOH . G 6 HOH A 5 505 72 HOH HOH . G 6 HOH A 6 506 33 HOH HOH . G 6 HOH A 7 507 42 HOH HOH . G 6 HOH A 8 508 25 HOH HOH . G 6 HOH A 9 509 96 HOH HOH . G 6 HOH A 10 510 189 HOH HOH . G 6 HOH A 11 511 40 HOH HOH . G 6 HOH A 12 512 166 HOH HOH . G 6 HOH A 13 513 174 HOH HOH . G 6 HOH A 14 514 63 HOH HOH . G 6 HOH A 15 515 183 HOH HOH . G 6 HOH A 16 516 38 HOH HOH . G 6 HOH A 17 517 65 HOH HOH . G 6 HOH A 18 518 52 HOH HOH . G 6 HOH A 19 519 28 HOH HOH . G 6 HOH A 20 520 78 HOH HOH . G 6 HOH A 21 521 110 HOH HOH . G 6 HOH A 22 522 73 HOH HOH . G 6 HOH A 23 523 162 HOH HOH . G 6 HOH A 24 524 1 HOH HOH . G 6 HOH A 25 525 135 HOH HOH . G 6 HOH A 26 526 137 HOH HOH . G 6 HOH A 27 527 149 HOH HOH . G 6 HOH A 28 528 103 HOH HOH . G 6 HOH A 29 529 6 HOH HOH . G 6 HOH A 30 530 119 HOH HOH . G 6 HOH A 31 531 80 HOH HOH . G 6 HOH A 32 532 115 HOH HOH . G 6 HOH A 33 533 84 HOH HOH . G 6 HOH A 34 534 20 HOH HOH . G 6 HOH A 35 535 58 HOH HOH . G 6 HOH A 36 536 102 HOH HOH . G 6 HOH A 37 537 152 HOH HOH . G 6 HOH A 38 538 62 HOH HOH . G 6 HOH A 39 539 75 HOH HOH . G 6 HOH A 40 540 88 HOH HOH . G 6 HOH A 41 541 99 HOH HOH . G 6 HOH A 42 542 57 HOH HOH . G 6 HOH A 43 543 4 HOH HOH . G 6 HOH A 44 544 172 HOH HOH . G 6 HOH A 45 545 171 HOH HOH . G 6 HOH A 46 546 163 HOH HOH . G 6 HOH A 47 547 156 HOH HOH . G 6 HOH A 48 548 188 HOH HOH . G 6 HOH A 49 549 50 HOH HOH . G 6 HOH A 50 550 182 HOH HOH . G 6 HOH A 51 551 76 HOH HOH . G 6 HOH A 52 552 10 HOH HOH . G 6 HOH A 53 553 98 HOH HOH . G 6 HOH A 54 554 74 HOH HOH . G 6 HOH A 55 555 169 HOH HOH . G 6 HOH A 56 556 22 HOH HOH . G 6 HOH A 57 557 44 HOH HOH . G 6 HOH A 58 558 132 HOH HOH . G 6 HOH A 59 559 2 HOH HOH . G 6 HOH A 60 560 92 HOH HOH . G 6 HOH A 61 561 21 HOH HOH . G 6 HOH A 62 562 30 HOH HOH . G 6 HOH A 63 563 15 HOH HOH . G 6 HOH A 64 564 29 HOH HOH . G 6 HOH A 65 565 117 HOH HOH . G 6 HOH A 66 566 70 HOH HOH . G 6 HOH A 67 567 123 HOH HOH . G 6 HOH A 68 568 145 HOH HOH . G 6 HOH A 69 569 147 HOH HOH . G 6 HOH A 70 570 66 HOH HOH . G 6 HOH A 71 571 68 HOH HOH . G 6 HOH A 72 572 23 HOH HOH . G 6 HOH A 73 573 19 HOH HOH . G 6 HOH A 74 574 3 HOH HOH . G 6 HOH A 75 575 126 HOH HOH . G 6 HOH A 76 576 9 HOH HOH . G 6 HOH A 77 577 31 HOH HOH . G 6 HOH A 78 578 36 HOH HOH . G 6 HOH A 79 579 45 HOH HOH . G 6 HOH A 80 580 141 HOH HOH . G 6 HOH A 81 581 47 HOH HOH . G 6 HOH A 82 582 34 HOH HOH . G 6 HOH A 83 583 37 HOH HOH . G 6 HOH A 84 584 7 HOH HOH . G 6 HOH A 85 585 43 HOH HOH . G 6 HOH A 86 586 32 HOH HOH . G 6 HOH A 87 587 77 HOH HOH . G 6 HOH A 88 588 64 HOH HOH . G 6 HOH A 89 589 55 HOH HOH . G 6 HOH A 90 590 170 HOH HOH . G 6 HOH A 91 591 56 HOH HOH . G 6 HOH A 92 592 67 HOH HOH . G 6 HOH A 93 593 17 HOH HOH . G 6 HOH A 94 594 138 HOH HOH . G 6 HOH A 95 595 83 HOH HOH . G 6 HOH A 96 596 54 HOH HOH . G 6 HOH A 97 597 144 HOH HOH . G 6 HOH A 98 598 13 HOH HOH . G 6 HOH A 99 599 175 HOH HOH . G 6 HOH A 100 600 108 HOH HOH . G 6 HOH A 101 601 184 HOH HOH . G 6 HOH A 102 602 26 HOH HOH . G 6 HOH A 103 603 12 HOH HOH . G 6 HOH A 104 604 100 HOH HOH . G 6 HOH A 105 605 61 HOH HOH . G 6 HOH A 106 606 39 HOH HOH . G 6 HOH A 107 607 53 HOH HOH . G 6 HOH A 108 608 49 HOH HOH . G 6 HOH A 109 609 104 HOH HOH . G 6 HOH A 110 610 186 HOH HOH . G 6 HOH A 111 611 89 HOH HOH . G 6 HOH A 112 612 16 HOH HOH . G 6 HOH A 113 613 18 HOH HOH . G 6 HOH A 114 614 114 HOH HOH . G 6 HOH A 115 615 113 HOH HOH . G 6 HOH A 116 616 11 HOH HOH . G 6 HOH A 117 617 81 HOH HOH . G 6 HOH A 118 618 109 HOH HOH . G 6 HOH A 119 619 112 HOH HOH . G 6 HOH A 120 620 146 HOH HOH . G 6 HOH A 121 621 82 HOH HOH . G 6 HOH A 122 622 24 HOH HOH . G 6 HOH A 123 623 151 HOH HOH . G 6 HOH A 124 624 85 HOH HOH . G 6 HOH A 125 625 5 HOH HOH . G 6 HOH A 126 626 60 HOH HOH . G 6 HOH A 127 627 41 HOH HOH . G 6 HOH A 128 628 69 HOH HOH . G 6 HOH A 129 629 97 HOH HOH . G 6 HOH A 130 630 167 HOH HOH . G 6 HOH A 131 631 177 HOH HOH . G 6 HOH A 132 632 181 HOH HOH . G 6 HOH A 133 633 27 HOH HOH . G 6 HOH A 134 634 160 HOH HOH . G 6 HOH A 135 635 8 HOH HOH . G 6 HOH A 136 636 180 HOH HOH . G 6 HOH A 137 637 48 HOH HOH . G 6 HOH A 138 638 79 HOH HOH . G 6 HOH A 139 639 158 HOH HOH . G 6 HOH A 140 640 120 HOH HOH . G 6 HOH A 141 641 143 HOH HOH . G 6 HOH A 142 642 14 HOH HOH . G 6 HOH A 143 643 161 HOH HOH . G 6 HOH A 144 644 124 HOH HOH . G 6 HOH A 145 645 176 HOH HOH . G 6 HOH A 146 646 90 HOH HOH . G 6 HOH A 147 647 86 HOH HOH . G 6 HOH A 148 648 140 HOH HOH . G 6 HOH A 149 649 87 HOH HOH . G 6 HOH A 150 650 136 HOH HOH . G 6 HOH A 151 651 154 HOH HOH . G 6 HOH A 152 652 130 HOH HOH . G 6 HOH A 153 653 134 HOH HOH . G 6 HOH A 154 654 105 HOH HOH . G 6 HOH A 155 655 168 HOH HOH . G 6 HOH A 156 656 125 HOH HOH . G 6 HOH A 157 657 35 HOH HOH . G 6 HOH A 158 658 116 HOH HOH . G 6 HOH A 159 659 93 HOH HOH . G 6 HOH A 160 660 122 HOH HOH . G 6 HOH A 161 661 133 HOH HOH . G 6 HOH A 162 662 127 HOH HOH . G 6 HOH A 163 663 51 HOH HOH . G 6 HOH A 164 664 91 HOH HOH . G 6 HOH A 165 665 165 HOH HOH . G 6 HOH A 166 666 106 HOH HOH . G 6 HOH A 167 667 150 HOH HOH . G 6 HOH A 168 668 71 HOH HOH . G 6 HOH A 169 669 142 HOH HOH . G 6 HOH A 170 670 155 HOH HOH . G 6 HOH A 171 671 101 HOH HOH . G 6 HOH A 172 672 46 HOH HOH . G 6 HOH A 173 673 59 HOH HOH . G 6 HOH A 174 674 95 HOH HOH . G 6 HOH A 175 675 185 HOH HOH . G 6 HOH A 176 676 157 HOH HOH . G 6 HOH A 177 677 179 HOH HOH . G 6 HOH A 178 678 111 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 4 _atom_site.Cartn_x 12.451 _atom_site.Cartn_y 21.566 _atom_site.Cartn_z 0 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 24.78 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 404 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 1 #