data_7SQ4 # _model_server_result.job_id GU9yAGgzwtkkeRfBj1qtvw _model_server_result.datetime_utc '2025-03-30 11:31:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7sq4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 7SQ4 # _exptl.entry_id 7SQ4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7SQ4 _cell.length_a 55.81 _cell.length_b 55.81 _cell.length_c 55.81 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7SQ4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1 A,B,C,D,E 1 2 A,B,C,D,E 1 3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_445 z-1/2,-x-1/2,-y 0 0 1 -1 0 0 0 -1 0 -27.905 -27.905 0 3 'crystal symmetry operation' 12_455 -y-1/2,-z,x+1/2 0 -1 0 0 0 -1 1 0 0 -27.905 0 27.905 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O SER 26 A SER 23 1_555 B NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.905 ? metalc ? metalc2 A OG SER 26 A SER 23 1_555 B NA NA . A NA 201 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.729 ? metalc ? metalc3 B NA NA . A NA 201 1_555 E O HOH . A HOH 326 9_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 203 n n C1 H11 MPD sing 204 n n C1 H12 MPD sing 205 n n C1 H13 MPD sing 206 n n C2 O2 MPD sing 207 n n C2 CM MPD sing 208 n n C2 C3 MPD sing 209 n n O2 HO2 MPD sing 210 n n CM HM1 MPD sing 211 n n CM HM2 MPD sing 212 n n CM HM3 MPD sing 213 n n C3 C4 MPD sing 214 n n C3 H31 MPD sing 215 n n C3 H32 MPD sing 216 n n C4 O4 MPD sing 217 n n C4 C5 MPD sing 218 n n C4 H4 MPD sing 219 n n O4 HO4 MPD sing 220 n n C5 H51 MPD sing 221 n n C5 H52 MPD sing 222 n n C5 H53 MPD sing 223 n n # _atom_sites.entry_id 7SQ4 _atom_sites.fract_transf_matrix[1][1] 0.017918 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017918 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017918 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 201 2 NA NA . C 3 MPD A 1 202 2 MPD MPD . D 3 MPD A 1 203 3 MPD MPD . E 4 HOH A 1 301 10 HOH HOH . E 4 HOH A 2 302 11 HOH HOH . E 4 HOH A 3 303 40 HOH HOH . E 4 HOH A 4 304 4 HOH HOH . E 4 HOH A 5 305 7 HOH HOH . E 4 HOH A 6 306 9 HOH HOH . E 4 HOH A 7 307 2 HOH HOH . E 4 HOH A 8 308 1 HOH HOH . E 4 HOH A 9 309 19 HOH HOH . E 4 HOH A 10 310 23 HOH HOH . E 4 HOH A 11 311 13 HOH HOH . E 4 HOH A 12 312 3 HOH HOH . E 4 HOH A 13 313 39 HOH HOH . E 4 HOH A 14 314 20 HOH HOH . E 4 HOH A 15 315 31 HOH HOH . E 4 HOH A 16 316 12 HOH HOH . E 4 HOH A 17 317 22 HOH HOH . E 4 HOH A 18 318 32 HOH HOH . E 4 HOH A 19 319 18 HOH HOH . E 4 HOH A 20 320 5 HOH HOH . E 4 HOH A 21 321 16 HOH HOH . E 4 HOH A 22 322 30 HOH HOH . E 4 HOH A 23 323 8 HOH HOH . E 4 HOH A 24 324 33 HOH HOH . E 4 HOH A 25 325 38 HOH HOH . E 4 HOH A 26 326 29 HOH HOH . E 4 HOH A 27 327 41 HOH HOH . E 4 HOH A 28 328 21 HOH HOH . E 4 HOH A 29 329 35 HOH HOH . E 4 HOH A 30 330 27 HOH HOH . E 4 HOH A 31 331 42 HOH HOH . E 4 HOH A 32 332 37 HOH HOH . E 4 HOH A 33 333 17 HOH HOH . E 4 HOH A 34 334 34 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . C 3 -26.573 -13.919 -1.393 1 26.72 ? C1 MPD 202 A 1 HETATM 2 C C2 MPD . . . C 3 -28.078 -13.774 -1.572 1 28.63 ? C2 MPD 202 A 1 HETATM 3 O O2 MPD . . . C 3 -28.305 -12.998 -2.774 1 37.44 ? O2 MPD 202 A 1 HETATM 4 C CM MPD . . . C 3 -28.688 -15.155 -1.768 1 31.69 ? CM MPD 202 A 1 HETATM 5 C C3 MPD . . . C 3 -28.708 -13.039 -0.393 1 31.72 ? C3 MPD 202 A 1 HETATM 6 C C4 MPD . . . C 3 -28.38 -11.553 -0.505 1 39.69 ? C4 MPD 202 A 1 HETATM 7 O O4 MPD . . . C 3 -29.296 -10.954 -1.397 1 47.62 ? O4 MPD 202 A 1 HETATM 8 C C5 MPD . . . C 3 -28.436 -10.833 0.832 1 43.86 ? C5 MPD 202 A 1 HETATM 9 H H11 MPD . . . C 3 -26.231 -13.232 -0.619 1 32.07 ? H11 MPD 202 A 1 HETATM 10 H H12 MPD . . . C 3 -26.072 -13.687 -2.333 1 32.07 ? H12 MPD 202 A 1 HETATM 11 H H13 MPD . . . C 3 -26.339 -14.942 -1.1 1 32.07 ? H13 MPD 202 A 1 HETATM 12 H HO2 MPD . . . C 3 -29.134 -12.484 -2.679 1 44.94 ? HO2 MPD 202 A 1 HETATM 13 H HM1 MPD . . . C 3 -29.21 -15.454 -0.859 1 38.04 ? HM1 MPD 202 A 1 HETATM 14 H HM2 MPD . . . C 3 -27.898 -15.873 -1.987 1 38.04 ? HM2 MPD 202 A 1 HETATM 15 H HM3 MPD . . . C 3 -29.393 -15.126 -2.599 1 38.04 ? HM3 MPD 202 A 1 HETATM 16 H H31 MPD . . . C 3 -29.788 -13.184 -0.396 1 38.07 ? H31 MPD 202 A 1 HETATM 17 H H32 MPD . . . C 3 -28.32 -13.436 0.545 1 38.07 ? H32 MPD 202 A 1 HETATM 18 H H4 MPD . . . C 3 -27.359 -11.465 -0.875 1 47.64 ? H4 MPD 202 A 1 HETATM 19 H HO4 MPD . . . C 3 -28.822 -10.654 -2.2 1 57.15 ? HO4 MPD 202 A 1 HETATM 20 H H51 MPD . . . C 3 -29.028 -9.923 0.73 1 52.63 ? H51 MPD 202 A 1 HETATM 21 H H52 MPD . . . C 3 -27.426 -10.575 1.149 1 52.63 ? H52 MPD 202 A 1 HETATM 22 H H53 MPD . . . C 3 -28.896 -11.483 1.576 1 52.63 ? H53 MPD 202 A 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 117 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 335 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 22 #