data_7SQ4 # _model_server_result.job_id jVp32yYa1xx68W1ldKl1vw _model_server_result.datetime_utc '2025-03-30 15:00:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7sq4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 7SQ4 # _exptl.entry_id 7SQ4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7SQ4 _cell.length_a 55.81 _cell.length_b 55.81 _cell.length_c 55.81 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7SQ4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1 A,B,C,D,E 1 2 A,B,C,D,E 1 3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_445 z-1/2,-x-1/2,-y 0 0 1 -1 0 0 0 -1 0 -27.905 -27.905 0 3 'crystal symmetry operation' 12_455 -y-1/2,-z,x+1/2 0 -1 0 0 0 -1 1 0 0 -27.905 0 27.905 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O SER 26 A SER 23 1_555 B NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.905 ? metalc ? metalc2 A OG SER 26 A SER 23 1_555 B NA NA . A NA 201 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.729 ? metalc ? metalc3 B NA NA . A NA 201 1_555 E O HOH . A HOH 326 9_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 203 n n C1 H11 MPD sing 204 n n C1 H12 MPD sing 205 n n C1 H13 MPD sing 206 n n C2 O2 MPD sing 207 n n C2 CM MPD sing 208 n n C2 C3 MPD sing 209 n n O2 HO2 MPD sing 210 n n CM HM1 MPD sing 211 n n CM HM2 MPD sing 212 n n CM HM3 MPD sing 213 n n C3 C4 MPD sing 214 n n C3 H31 MPD sing 215 n n C3 H32 MPD sing 216 n n C4 O4 MPD sing 217 n n C4 C5 MPD sing 218 n n C4 H4 MPD sing 219 n n O4 HO4 MPD sing 220 n n C5 H51 MPD sing 221 n n C5 H52 MPD sing 222 n n C5 H53 MPD sing 223 n n # _atom_sites.entry_id 7SQ4 _atom_sites.fract_transf_matrix[1][1] 0.017918 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017918 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017918 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 201 2 NA NA . C 3 MPD A 1 202 2 MPD MPD . D 3 MPD A 1 203 3 MPD MPD . E 4 HOH A 1 301 10 HOH HOH . E 4 HOH A 2 302 11 HOH HOH . E 4 HOH A 3 303 40 HOH HOH . E 4 HOH A 4 304 4 HOH HOH . E 4 HOH A 5 305 7 HOH HOH . E 4 HOH A 6 306 9 HOH HOH . E 4 HOH A 7 307 2 HOH HOH . E 4 HOH A 8 308 1 HOH HOH . E 4 HOH A 9 309 19 HOH HOH . E 4 HOH A 10 310 23 HOH HOH . E 4 HOH A 11 311 13 HOH HOH . E 4 HOH A 12 312 3 HOH HOH . E 4 HOH A 13 313 39 HOH HOH . E 4 HOH A 14 314 20 HOH HOH . E 4 HOH A 15 315 31 HOH HOH . E 4 HOH A 16 316 12 HOH HOH . E 4 HOH A 17 317 22 HOH HOH . E 4 HOH A 18 318 32 HOH HOH . E 4 HOH A 19 319 18 HOH HOH . E 4 HOH A 20 320 5 HOH HOH . E 4 HOH A 21 321 16 HOH HOH . E 4 HOH A 22 322 30 HOH HOH . E 4 HOH A 23 323 8 HOH HOH . E 4 HOH A 24 324 33 HOH HOH . E 4 HOH A 25 325 38 HOH HOH . E 4 HOH A 26 326 29 HOH HOH . E 4 HOH A 27 327 41 HOH HOH . E 4 HOH A 28 328 21 HOH HOH . E 4 HOH A 29 329 35 HOH HOH . E 4 HOH A 30 330 27 HOH HOH . E 4 HOH A 31 331 42 HOH HOH . E 4 HOH A 32 332 37 HOH HOH . E 4 HOH A 33 333 17 HOH HOH . E 4 HOH A 34 334 34 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . D 3 -5.919 -3.616 -0.258 1 36.15 ? C1 MPD 203 A 1 HETATM 2 C C2 MPD . . . D 3 -6.422 -2.905 -1.505 1 33.51 ? C2 MPD 203 A 1 HETATM 3 O O2 MPD . . . D 3 -5.41 -1.948 -1.916 1 36.04 ? O2 MPD 203 A 1 HETATM 4 C CM MPD . . . D 3 -6.584 -3.926 -2.625 1 35.24 ? CM MPD 203 A 1 HETATM 5 C C3 MPD . . . D 3 -7.764 -2.215 -1.258 1 33.78 ? C3 MPD 203 A 1 HETATM 6 C C4 MPD . . . D 3 -7.727 -1.299 -0.038 1 34.88 ? C4 MPD 203 A 1 HETATM 7 O O4 MPD . . . D 3 -8.442 -0.105 -0.251 1 41.63 ? O4 MPD 203 A 1 HETATM 8 C C5 MPD . . . D 3 -8.322 -2.023 1.167 1 40.23 ? C5 MPD 203 A 1 HETATM 9 H H11 MPD . . . D 3 -5.958 -2.933 0.591 1 43.38 ? H11 MPD 203 A 1 HETATM 10 H H12 MPD . . . D 3 -4.891 -3.943 -0.415 1 43.38 ? H12 MPD 203 A 1 HETATM 11 H H13 MPD . . . D 3 -6.549 -4.483 -0.055 1 43.38 ? H13 MPD 203 A 1 HETATM 12 H HO2 MPD . . . D 3 -5.763 -1.389 -2.639 1 43.25 ? HO2 MPD 203 A 1 HETATM 13 H HM1 MPD . . . D 3 -7.623 -4.252 -2.673 1 42.3 ? HM1 MPD 203 A 1 HETATM 14 H HM2 MPD . . . D 3 -5.942 -4.785 -2.429 1 42.3 ? HM2 MPD 203 A 1 HETATM 15 H HM3 MPD . . . D 3 -6.302 -3.471 -3.575 1 42.3 ? HM3 MPD 203 A 1 HETATM 16 H H31 MPD . . . D 3 -8.031 -1.628 -2.137 1 40.54 ? H31 MPD 203 A 1 HETATM 17 H H32 MPD . . . D 3 -8.534 -2.972 -1.114 1 40.54 ? H32 MPD 203 A 1 HETATM 18 H H4 MPD . . . D 3 -6.685 -1.038 0.144 1 41.87 ? H4 MPD 203 A 1 HETATM 19 H HO4 MPD . . . D 3 -9.217 -0.077 0.348 1 49.96 ? HO4 MPD 203 A 1 HETATM 20 H H51 MPD . . . D 3 -7.52 -2.34 1.833 1 48.29 ? H51 MPD 203 A 1 HETATM 21 H H52 MPD . . . D 3 -8.879 -2.897 0.828 1 48.29 ? H52 MPD 203 A 1 HETATM 22 H H53 MPD . . . D 3 -8.993 -1.35 1.7 1 48.29 ? H53 MPD 203 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 22 #