data_7SS7 # _model_server_result.job_id MhqSmd29r_A7hU-csU3LUA _model_server_result.datetime_utc '2024-12-27 07:06:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ss7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":309}' # _entry.id 7SS7 # _exptl.entry_id 7SS7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7SS7 _cell.length_a 106.53 _cell.length_b 106.53 _cell.length_c 53.56 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7SS7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall 'P 32 2"' _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 8 A ASP 8 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc2 A NE2 HIS 10 A HIS 10 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc3 A OD2 ASP 41 A ASP 41 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc4 A OD2 ASP 41 A ASP 41 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc5 A OD1 ASN 79 A ASN 79 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.942 ? metalc ? metalc6 A NE2 HIS 114 A HIS 114 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc7 A ND1 HIS 195 A HIS 195 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc8 A NE2 HIS 197 A HIS 197 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc9 B MN MN . A MN 301 1_555 D O28 BN8 . A BN8 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc10 B MN MN . A MN 301 1_555 D O30 BN8 . A BN8 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc11 C MN MN . A MN 302 1_555 D N29 BN8 . A BN8 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc12 C MN MN . A MN 302 1_555 D O30 BN8 . A BN8 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 153 n n C1 C2 EDO sing 154 n n C1 H11 EDO sing 155 n n C1 H12 EDO sing 156 n n O1 HO1 EDO sing 157 n n C2 O2 EDO sing 158 n n C2 H21 EDO sing 159 n n C2 H22 EDO sing 160 n n O2 HO2 EDO sing 161 n n # _atom_sites.entry_id 7SS7 _atom_sites.fract_transf_matrix[1][1] 0.009387 _atom_sites.fract_transf_matrix[1][2] 0.00542 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010839 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018671 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 301 1 MN MN . C 2 MN A 1 302 2 MN MN . D 3 BN8 A 1 303 1 BN8 LIG . E 4 EDO A 1 304 1 EDO EDO . F 4 EDO A 1 305 2 EDO EDO . G 4 EDO A 1 306 3 EDO EDO . H 4 EDO A 1 307 4 EDO EDO . I 4 EDO A 1 308 5 EDO EDO . J 4 EDO A 1 309 7 EDO EDO . K 5 HOH A 1 401 129 HOH HOH . K 5 HOH A 2 402 68 HOH HOH . K 5 HOH A 3 403 240 HOH HOH . K 5 HOH A 4 404 95 HOH HOH . K 5 HOH A 5 405 192 HOH HOH . K 5 HOH A 6 406 237 HOH HOH . K 5 HOH A 7 407 118 HOH HOH . K 5 HOH A 8 408 72 HOH HOH . K 5 HOH A 9 409 48 HOH HOH . K 5 HOH A 10 410 186 HOH HOH . K 5 HOH A 11 411 123 HOH HOH . K 5 HOH A 12 412 175 HOH HOH . K 5 HOH A 13 413 185 HOH HOH . K 5 HOH A 14 414 149 HOH HOH . K 5 HOH A 15 415 165 HOH HOH . K 5 HOH A 16 416 215 HOH HOH . K 5 HOH A 17 417 132 HOH HOH . K 5 HOH A 18 418 196 HOH HOH . K 5 HOH A 19 419 44 HOH HOH . K 5 HOH A 20 420 179 HOH HOH . K 5 HOH A 21 421 116 HOH HOH . K 5 HOH A 22 422 76 HOH HOH . K 5 HOH A 23 423 17 HOH HOH . K 5 HOH A 24 424 144 HOH HOH . K 5 HOH A 25 425 18 HOH HOH . K 5 HOH A 26 426 108 HOH HOH . K 5 HOH A 27 427 112 HOH HOH . K 5 HOH A 28 428 62 HOH HOH . K 5 HOH A 29 429 31 HOH HOH . K 5 HOH A 30 430 57 HOH HOH . K 5 HOH A 31 431 47 HOH HOH . K 5 HOH A 32 432 19 HOH HOH . K 5 HOH A 33 433 23 HOH HOH . K 5 HOH A 34 434 188 HOH HOH . K 5 HOH A 35 435 205 HOH HOH . K 5 HOH A 36 436 78 HOH HOH . K 5 HOH A 37 437 27 HOH HOH . K 5 HOH A 38 438 10 HOH HOH . K 5 HOH A 39 439 36 HOH HOH . K 5 HOH A 40 440 96 HOH HOH . K 5 HOH A 41 441 80 HOH HOH . K 5 HOH A 42 442 172 HOH HOH . K 5 HOH A 43 443 43 HOH HOH . K 5 HOH A 44 444 114 HOH HOH . K 5 HOH A 45 445 3 HOH HOH . K 5 HOH A 46 446 25 HOH HOH . K 5 HOH A 47 447 74 HOH HOH . K 5 HOH A 48 448 37 HOH HOH . K 5 HOH A 49 449 91 HOH HOH . K 5 HOH A 50 450 5 HOH HOH . K 5 HOH A 51 451 32 HOH HOH . K 5 HOH A 52 452 9 HOH HOH . K 5 HOH A 53 453 102 HOH HOH . K 5 HOH A 54 454 50 HOH HOH . K 5 HOH A 55 455 163 HOH HOH . K 5 HOH A 56 456 6 HOH HOH . K 5 HOH A 57 457 8 HOH HOH . K 5 HOH A 58 458 87 HOH HOH . K 5 HOH A 59 459 16 HOH HOH . K 5 HOH A 60 460 52 HOH HOH . K 5 HOH A 61 461 176 HOH HOH . K 5 HOH A 62 462 206 HOH HOH . K 5 HOH A 63 463 93 HOH HOH . K 5 HOH A 64 464 55 HOH HOH . K 5 HOH A 65 465 226 HOH HOH . K 5 HOH A 66 466 34 HOH HOH . K 5 HOH A 67 467 51 HOH HOH . K 5 HOH A 68 468 84 HOH HOH . K 5 HOH A 69 469 150 HOH HOH . K 5 HOH A 70 470 58 HOH HOH . K 5 HOH A 71 471 11 HOH HOH . K 5 HOH A 72 472 104 HOH HOH . K 5 HOH A 73 473 143 HOH HOH . K 5 HOH A 74 474 142 HOH HOH . K 5 HOH A 75 475 160 HOH HOH . K 5 HOH A 76 476 60 HOH HOH . K 5 HOH A 77 477 12 HOH HOH . K 5 HOH A 78 478 77 HOH HOH . K 5 HOH A 79 479 167 HOH HOH . K 5 HOH A 80 480 35 HOH HOH . K 5 HOH A 81 481 65 HOH HOH . K 5 HOH A 82 482 109 HOH HOH . K 5 HOH A 83 483 20 HOH HOH . K 5 HOH A 84 484 151 HOH HOH . K 5 HOH A 85 485 14 HOH HOH . K 5 HOH A 86 486 119 HOH HOH . K 5 HOH A 87 487 39 HOH HOH . K 5 HOH A 88 488 54 HOH HOH . K 5 HOH A 89 489 81 HOH HOH . K 5 HOH A 90 490 210 HOH HOH . K 5 HOH A 91 491 209 HOH HOH . K 5 HOH A 92 492 110 HOH HOH . K 5 HOH A 93 493 198 HOH HOH . K 5 HOH A 94 494 168 HOH HOH . K 5 HOH A 95 495 136 HOH HOH . K 5 HOH A 96 496 29 HOH HOH . K 5 HOH A 97 497 15 HOH HOH . K 5 HOH A 98 498 83 HOH HOH . K 5 HOH A 99 499 4 HOH HOH . K 5 HOH A 100 500 26 HOH HOH . K 5 HOH A 101 501 94 HOH HOH . K 5 HOH A 102 502 166 HOH HOH . K 5 HOH A 103 503 22 HOH HOH . K 5 HOH A 104 504 90 HOH HOH . K 5 HOH A 105 505 113 HOH HOH . K 5 HOH A 106 506 164 HOH HOH . K 5 HOH A 107 507 38 HOH HOH . K 5 HOH A 108 508 107 HOH HOH . K 5 HOH A 109 509 88 HOH HOH . K 5 HOH A 110 510 2 HOH HOH . K 5 HOH A 111 511 61 HOH HOH . K 5 HOH A 112 512 103 HOH HOH . K 5 HOH A 113 513 161 HOH HOH . K 5 HOH A 114 514 64 HOH HOH . K 5 HOH A 115 515 117 HOH HOH . K 5 HOH A 116 516 125 HOH HOH . K 5 HOH A 117 517 133 HOH HOH . K 5 HOH A 118 518 33 HOH HOH . K 5 HOH A 119 519 145 HOH HOH . K 5 HOH A 120 520 232 HOH HOH . K 5 HOH A 121 521 98 HOH HOH . K 5 HOH A 122 522 63 HOH HOH . K 5 HOH A 123 523 67 HOH HOH . K 5 HOH A 124 524 204 HOH HOH . K 5 HOH A 125 525 105 HOH HOH . K 5 HOH A 126 526 45 HOH HOH . K 5 HOH A 127 527 49 HOH HOH . K 5 HOH A 128 528 174 HOH HOH . K 5 HOH A 129 529 75 HOH HOH . K 5 HOH A 130 530 171 HOH HOH . K 5 HOH A 131 531 24 HOH HOH . K 5 HOH A 132 532 182 HOH HOH . K 5 HOH A 133 533 42 HOH HOH . K 5 HOH A 134 534 128 HOH HOH . K 5 HOH A 135 535 122 HOH HOH . K 5 HOH A 136 536 46 HOH HOH . K 5 HOH A 137 537 21 HOH HOH . K 5 HOH A 138 538 244 HOH HOH . K 5 HOH A 139 539 234 HOH HOH . K 5 HOH A 140 540 30 HOH HOH . K 5 HOH A 141 541 138 HOH HOH . K 5 HOH A 142 542 99 HOH HOH . K 5 HOH A 143 543 141 HOH HOH . K 5 HOH A 144 544 66 HOH HOH . K 5 HOH A 145 545 152 HOH HOH . K 5 HOH A 146 546 82 HOH HOH . K 5 HOH A 147 547 231 HOH HOH . K 5 HOH A 148 548 177 HOH HOH . K 5 HOH A 149 549 184 HOH HOH . K 5 HOH A 150 550 241 HOH HOH . K 5 HOH A 151 551 130 HOH HOH . K 5 HOH A 152 552 180 HOH HOH . K 5 HOH A 153 553 169 HOH HOH . K 5 HOH A 154 554 111 HOH HOH . K 5 HOH A 155 555 1 HOH HOH . K 5 HOH A 156 556 71 HOH HOH . K 5 HOH A 157 557 127 HOH HOH . K 5 HOH A 158 558 41 HOH HOH . K 5 HOH A 159 559 69 HOH HOH . K 5 HOH A 160 560 56 HOH HOH . K 5 HOH A 161 561 153 HOH HOH . K 5 HOH A 162 562 200 HOH HOH . K 5 HOH A 163 563 89 HOH HOH . K 5 HOH A 164 564 13 HOH HOH . K 5 HOH A 165 565 199 HOH HOH . K 5 HOH A 166 566 218 HOH HOH . K 5 HOH A 167 567 225 HOH HOH . K 5 HOH A 168 568 197 HOH HOH . K 5 HOH A 169 569 156 HOH HOH . K 5 HOH A 170 570 158 HOH HOH . K 5 HOH A 171 571 195 HOH HOH . K 5 HOH A 172 572 92 HOH HOH . K 5 HOH A 173 573 211 HOH HOH . K 5 HOH A 174 574 219 HOH HOH . K 5 HOH A 175 575 223 HOH HOH . K 5 HOH A 176 576 208 HOH HOH . K 5 HOH A 177 577 220 HOH HOH . K 5 HOH A 178 578 162 HOH HOH . K 5 HOH A 179 579 53 HOH HOH . K 5 HOH A 180 580 183 HOH HOH . K 5 HOH A 181 581 248 HOH HOH . K 5 HOH A 182 582 131 HOH HOH . K 5 HOH A 183 583 214 HOH HOH . K 5 HOH A 184 584 227 HOH HOH . K 5 HOH A 185 585 190 HOH HOH . K 5 HOH A 186 586 140 HOH HOH . K 5 HOH A 187 587 148 HOH HOH . K 5 HOH A 188 588 228 HOH HOH . K 5 HOH A 189 589 189 HOH HOH . K 5 HOH A 190 590 155 HOH HOH . K 5 HOH A 191 591 139 HOH HOH . K 5 HOH A 192 592 135 HOH HOH . K 5 HOH A 193 593 235 HOH HOH . K 5 HOH A 194 594 134 HOH HOH . K 5 HOH A 195 595 216 HOH HOH . K 5 HOH A 196 596 115 HOH HOH . K 5 HOH A 197 597 243 HOH HOH . K 5 HOH A 198 598 40 HOH HOH . K 5 HOH A 199 599 146 HOH HOH . K 5 HOH A 200 600 230 HOH HOH . K 5 HOH A 201 601 120 HOH HOH . K 5 HOH A 202 602 181 HOH HOH . K 5 HOH A 203 603 212 HOH HOH . K 5 HOH A 204 604 79 HOH HOH . K 5 HOH A 205 605 229 HOH HOH . K 5 HOH A 206 606 246 HOH HOH . K 5 HOH A 207 607 100 HOH HOH . K 5 HOH A 208 608 239 HOH HOH . K 5 HOH A 209 609 106 HOH HOH . K 5 HOH A 210 610 97 HOH HOH . K 5 HOH A 211 611 124 HOH HOH . K 5 HOH A 212 612 147 HOH HOH . K 5 HOH A 213 613 101 HOH HOH . K 5 HOH A 214 614 159 HOH HOH . K 5 HOH A 215 615 252 HOH HOH . K 5 HOH A 216 616 121 HOH HOH . K 5 HOH A 217 617 7 HOH HOH . K 5 HOH A 218 618 170 HOH HOH . K 5 HOH A 219 619 236 HOH HOH . K 5 HOH A 220 620 154 HOH HOH . K 5 HOH A 221 621 178 HOH HOH . K 5 HOH A 222 622 73 HOH HOH . K 5 HOH A 223 623 28 HOH HOH . K 5 HOH A 224 624 193 HOH HOH . K 5 HOH A 225 625 221 HOH HOH . K 5 HOH A 226 626 59 HOH HOH . K 5 HOH A 227 627 70 HOH HOH . K 5 HOH A 228 628 222 HOH HOH . K 5 HOH A 229 629 126 HOH HOH . K 5 HOH A 230 630 245 HOH HOH . K 5 HOH A 231 631 207 HOH HOH . K 5 HOH A 232 632 213 HOH HOH . K 5 HOH A 233 633 173 HOH HOH . K 5 HOH A 234 634 157 HOH HOH . K 5 HOH A 235 635 202 HOH HOH . K 5 HOH A 236 636 187 HOH HOH . K 5 HOH A 237 637 86 HOH HOH . K 5 HOH A 238 638 249 HOH HOH . K 5 HOH A 239 639 137 HOH HOH . K 5 HOH A 240 640 85 HOH HOH . K 5 HOH A 241 641 224 HOH HOH . K 5 HOH A 242 642 253 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . J 4 -41.39 1.226 6.435 1 56.7 ? C1 EDO 309 A 1 HETATM 2 O O1 EDO . . . J 4 -42.111 1.641 7.601 1 60.22 ? O1 EDO 309 A 1 HETATM 3 C C2 EDO . . . J 4 -40.02 0.696 6.838 1 59.91 ? C2 EDO 309 A 1 HETATM 4 O O2 EDO . . . J 4 -39.241 0.419 5.666 1 57.19 ? O2 EDO 309 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #