data_7SSQ # _model_server_result.job_id 3DuUiNKeNvtD3KzBMbxzrA _model_server_result.datetime_utc '2024-11-14 19:40:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ssq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":606}' # _entry.id 7SSQ # _exptl.entry_id 7SSQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7SSQ _cell.length_a 113.94 _cell.length_b 113.94 _cell.length_c 308.49 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7SSQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall 'R 3 2"' _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -y,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -56.97 98.674935 0 3 'crystal symmetry operation' 3_455 -x+y-1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -113.94 0 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 3 4 3 MAN BMA C1 O1 . O6 HO6 . sing 4 ? 3 5 4 NAG MAN C1 O1 . O2 HO2 . sing 5 ? 3 6 3 MAN BMA C1 O1 . O3 HO3 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG B 701 NAG 3 n C NAG 2 C 2 NAG B 702 NAG 3 n C BMA 3 C 3 BMA B 703 BMA 3 n C MAN 4 C 4 MAN B 704 MAN 3 n C NAG 5 C 5 NAG B 705 NAG 3 n C MAN 6 C 6 MAN B 706 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 A CYS 53 1_555 B SG CYS 108 B CYS 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 A SG CYS 81 A CYS 108 1_555 A SG CYS 108 A CYS 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf3 A SG CYS 94 A CYS 121 1_555 A SG CYS 120 A CYS 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 B SG CYS 10 B CYS 511 1_555 B SG CYS 55 B CYS 556 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf5 B SG CYS 100 B CYS 601 1_555 B SG CYS 107 B CYS 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? covale ? covale1 A ND2 ASN 201 A ASN 228 1_555 G C1 NAG . A NAG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale2 A ND2 ASN 211 A ASN 238 1_555 E C1 NAG . A NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale3 A ND2 ASN 230 A ASN 257 1_555 D C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale4 A ND2 ASN 241 A ASN 268 1_555 F C1 NAG . A NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale5 B ND2 ASN 62 B ASN 563 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale6 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale7 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale8 C O6 BMA . C BMA 3 1_555 C C1 MAN . C MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale9 C O3 BMA . C BMA 3 1_555 C C1 MAN . C MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale10 C O2 MAN . C MAN 4 1_555 C C1 NAG . C NAG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.471 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 113 n n C1 C2 EDO sing 114 n n C1 H11 EDO sing 115 n n C1 H12 EDO sing 116 n n O1 HO1 EDO sing 117 n n C2 O2 EDO sing 118 n n C2 H21 EDO sing 119 n n C2 H22 EDO sing 120 n n O2 HO2 EDO sing 121 n n # _atom_sites.entry_id 7SSQ _atom_sites.fract_transf_matrix[1][1] 0.008777 _atom_sites.fract_transf_matrix[1][2] 0.005067 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010134 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003242 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG A 1 601 601 NAG NAG . E 4 NAG A 1 602 602 NAG NAG . F 4 NAG A 1 603 603 NAG NAG . G 4 NAG A 1 604 604 NAG NAG . H 5 ZQH A 1 605 605 ZQH 231 . I 6 EDO A 1 606 606 EDO EDO . J 7 ACT A 1 607 607 ACT ACT . K 7 ACT A 1 608 608 ACT ACT . L 8 HOH A 1 701 142 HOH HOH . L 8 HOH A 2 702 31 HOH HOH . L 8 HOH A 3 703 28 HOH HOH . L 8 HOH A 4 704 34 HOH HOH . L 8 HOH A 5 705 128 HOH HOH . L 8 HOH A 6 706 23 HOH HOH . L 8 HOH A 7 707 20 HOH HOH . L 8 HOH A 8 708 79 HOH HOH . L 8 HOH A 9 709 75 HOH HOH . L 8 HOH A 10 710 73 HOH HOH . L 8 HOH A 11 711 26 HOH HOH . L 8 HOH A 12 712 153 HOH HOH . L 8 HOH A 13 713 56 HOH HOH . L 8 HOH A 14 714 141 HOH HOH . L 8 HOH A 15 715 109 HOH HOH . L 8 HOH A 16 716 9 HOH HOH . L 8 HOH A 17 717 93 HOH HOH . L 8 HOH A 18 718 152 HOH HOH . L 8 HOH A 19 719 148 HOH HOH . L 8 HOH A 20 720 112 HOH HOH . L 8 HOH A 21 721 91 HOH HOH . L 8 HOH A 22 722 45 HOH HOH . L 8 HOH A 23 723 16 HOH HOH . L 8 HOH A 24 724 76 HOH HOH . L 8 HOH A 25 725 123 HOH HOH . L 8 HOH A 26 726 74 HOH HOH . L 8 HOH A 27 727 100 HOH HOH . L 8 HOH A 28 728 11 HOH HOH . L 8 HOH A 29 729 48 HOH HOH . L 8 HOH A 30 730 15 HOH HOH . L 8 HOH A 31 731 225 HOH HOH . L 8 HOH A 32 732 7 HOH HOH . L 8 HOH A 33 733 47 HOH HOH . L 8 HOH A 34 734 55 HOH HOH . L 8 HOH A 35 735 51 HOH HOH . L 8 HOH A 36 736 132 HOH HOH . L 8 HOH A 37 737 68 HOH HOH . L 8 HOH A 38 738 64 HOH HOH . L 8 HOH A 39 739 230 HOH HOH . L 8 HOH A 40 740 59 HOH HOH . L 8 HOH A 41 741 22 HOH HOH . L 8 HOH A 42 742 87 HOH HOH . L 8 HOH A 43 743 129 HOH HOH . L 8 HOH A 44 744 33 HOH HOH . L 8 HOH A 45 745 134 HOH HOH . L 8 HOH A 46 746 3 HOH HOH . L 8 HOH A 47 747 30 HOH HOH . L 8 HOH A 48 748 35 HOH HOH . L 8 HOH A 49 749 216 HOH HOH . L 8 HOH A 50 750 27 HOH HOH . L 8 HOH A 51 751 58 HOH HOH . L 8 HOH A 52 752 133 HOH HOH . L 8 HOH A 53 753 70 HOH HOH . L 8 HOH A 54 754 224 HOH HOH . L 8 HOH A 55 755 199 HOH HOH . L 8 HOH A 56 756 32 HOH HOH . L 8 HOH A 57 757 29 HOH HOH . L 8 HOH A 58 758 155 HOH HOH . L 8 HOH A 59 759 131 HOH HOH . L 8 HOH A 60 760 201 HOH HOH . L 8 HOH A 61 761 97 HOH HOH . L 8 HOH A 62 762 149 HOH HOH . L 8 HOH A 63 763 138 HOH HOH . L 8 HOH A 64 764 193 HOH HOH . L 8 HOH A 65 765 195 HOH HOH . L 8 HOH A 66 766 66 HOH HOH . L 8 HOH A 67 767 46 HOH HOH . L 8 HOH A 68 768 94 HOH HOH . L 8 HOH A 69 769 39 HOH HOH . L 8 HOH A 70 770 154 HOH HOH . L 8 HOH A 71 771 43 HOH HOH . L 8 HOH A 72 772 60 HOH HOH . L 8 HOH A 73 773 211 HOH HOH . L 8 HOH A 74 774 72 HOH HOH . L 8 HOH A 75 775 144 HOH HOH . L 8 HOH A 76 776 135 HOH HOH . L 8 HOH A 77 777 105 HOH HOH . L 8 HOH A 78 778 124 HOH HOH . L 8 HOH A 79 779 156 HOH HOH . L 8 HOH A 80 780 96 HOH HOH . L 8 HOH A 81 781 130 HOH HOH . L 8 HOH A 82 782 139 HOH HOH . L 8 HOH A 83 783 114 HOH HOH . L 8 HOH A 84 784 98 HOH HOH . L 8 HOH A 85 785 111 HOH HOH . L 8 HOH A 86 786 137 HOH HOH . L 8 HOH A 87 787 151 HOH HOH . L 8 HOH A 88 788 110 HOH HOH . L 8 HOH A 89 789 165 HOH HOH . L 8 HOH A 90 790 158 HOH HOH . L 8 HOH A 91 791 127 HOH HOH . L 8 HOH A 92 792 82 HOH HOH . L 8 HOH A 93 793 202 HOH HOH . L 8 HOH A 94 794 61 HOH HOH . L 8 HOH A 95 795 183 HOH HOH . L 8 HOH A 96 796 24 HOH HOH . L 8 HOH A 97 797 146 HOH HOH . L 8 HOH A 98 798 145 HOH HOH . L 8 HOH A 99 799 198 HOH HOH . L 8 HOH A 100 800 163 HOH HOH . L 8 HOH A 101 801 147 HOH HOH . L 8 HOH A 102 802 103 HOH HOH . L 8 HOH A 103 803 118 HOH HOH . L 8 HOH A 104 804 182 HOH HOH . L 8 HOH A 105 805 143 HOH HOH . L 8 HOH A 106 806 166 HOH HOH . L 8 HOH A 107 807 115 HOH HOH . L 8 HOH A 108 808 107 HOH HOH . L 8 HOH A 109 809 125 HOH HOH . L 8 HOH A 110 810 81 HOH HOH . M 8 HOH B 1 701 217 HOH HOH . M 8 HOH B 2 702 37 HOH HOH . M 8 HOH B 3 703 206 HOH HOH . M 8 HOH B 4 704 184 HOH HOH . M 8 HOH B 5 705 19 HOH HOH . M 8 HOH B 6 706 21 HOH HOH . M 8 HOH B 7 707 221 HOH HOH . M 8 HOH B 8 708 6 HOH HOH . M 8 HOH B 9 709 102 HOH HOH . M 8 HOH B 10 710 220 HOH HOH . M 8 HOH B 11 711 49 HOH HOH . M 8 HOH B 12 712 229 HOH HOH . M 8 HOH B 13 713 62 HOH HOH . M 8 HOH B 14 714 219 HOH HOH . M 8 HOH B 15 715 4 HOH HOH . M 8 HOH B 16 716 52 HOH HOH . M 8 HOH B 17 717 8 HOH HOH . M 8 HOH B 18 718 13 HOH HOH . M 8 HOH B 19 719 192 HOH HOH . M 8 HOH B 20 720 67 HOH HOH . M 8 HOH B 21 721 83 HOH HOH . M 8 HOH B 22 722 196 HOH HOH . M 8 HOH B 23 723 40 HOH HOH . M 8 HOH B 24 724 65 HOH HOH . M 8 HOH B 25 725 12 HOH HOH . M 8 HOH B 26 726 86 HOH HOH . M 8 HOH B 27 727 41 HOH HOH . M 8 HOH B 28 728 1 HOH HOH . M 8 HOH B 29 729 25 HOH HOH . M 8 HOH B 30 730 108 HOH HOH . M 8 HOH B 31 731 71 HOH HOH . M 8 HOH B 32 732 44 HOH HOH . M 8 HOH B 33 733 89 HOH HOH . M 8 HOH B 34 734 18 HOH HOH . M 8 HOH B 35 735 78 HOH HOH . M 8 HOH B 36 736 88 HOH HOH . M 8 HOH B 37 737 189 HOH HOH . M 8 HOH B 38 738 36 HOH HOH . M 8 HOH B 39 739 90 HOH HOH . M 8 HOH B 40 740 14 HOH HOH . M 8 HOH B 41 741 38 HOH HOH . M 8 HOH B 42 742 164 HOH HOH . M 8 HOH B 43 743 179 HOH HOH . M 8 HOH B 44 744 99 HOH HOH . M 8 HOH B 45 745 175 HOH HOH . M 8 HOH B 46 746 10 HOH HOH . M 8 HOH B 47 747 69 HOH HOH . M 8 HOH B 48 748 117 HOH HOH . M 8 HOH B 49 749 42 HOH HOH . M 8 HOH B 50 750 95 HOH HOH . M 8 HOH B 51 751 218 HOH HOH . M 8 HOH B 52 752 173 HOH HOH . M 8 HOH B 53 753 177 HOH HOH . M 8 HOH B 54 754 53 HOH HOH . M 8 HOH B 55 755 208 HOH HOH . M 8 HOH B 56 756 2 HOH HOH . M 8 HOH B 57 757 172 HOH HOH . M 8 HOH B 58 758 207 HOH HOH . M 8 HOH B 59 759 169 HOH HOH . M 8 HOH B 60 760 80 HOH HOH . M 8 HOH B 61 761 101 HOH HOH . M 8 HOH B 62 762 104 HOH HOH . M 8 HOH B 63 763 186 HOH HOH . M 8 HOH B 64 764 57 HOH HOH . M 8 HOH B 65 765 170 HOH HOH . M 8 HOH B 66 766 17 HOH HOH . M 8 HOH B 67 767 174 HOH HOH . M 8 HOH B 68 768 223 HOH HOH . M 8 HOH B 69 769 84 HOH HOH . M 8 HOH B 70 770 140 HOH HOH . M 8 HOH B 71 771 160 HOH HOH . M 8 HOH B 72 772 178 HOH HOH . M 8 HOH B 73 773 54 HOH HOH . M 8 HOH B 74 774 171 HOH HOH . M 8 HOH B 75 775 85 HOH HOH . M 8 HOH B 76 776 176 HOH HOH . M 8 HOH B 77 777 228 HOH HOH . M 8 HOH B 78 778 161 HOH HOH . M 8 HOH B 79 779 185 HOH HOH . M 8 HOH B 80 780 210 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . I 6 -50.914 17.916 4.9 1 75.42 ? C1 EDO 606 A 1 HETATM 2 O O1 EDO . . . I 6 -50.205 17.847 6.144 1 84.2 ? O1 EDO 606 A 1 HETATM 3 C C2 EDO . . . I 6 -51.803 16.686 4.767 1 73.7 ? C2 EDO 606 A 1 HETATM 4 O O2 EDO . . . I 6 -50.973 15.524 4.582 1 80.62 ? O2 EDO 606 A 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 461 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 4 #