data_7SSR # _model_server_result.job_id QW91bDUT575vvwSUTmVVLg _model_server_result.datetime_utc '2024-10-14 05:19:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ssr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":605}' # _entry.id 7SSR # _exptl.entry_id 7SSR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7SSR _cell.length_a 114.07 _cell.length_b 114.07 _cell.length_c 308.09 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7SSR _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall 'R 3 2"' _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -y,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -57.035 98.787518 0 3 'crystal symmetry operation' 3_455 -x+y-1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -114.07 0 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 3 4 3 MAN BMA C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG B 701 NAG 3 n C NAG 2 C 2 NAG B 702 NAG 3 n C BMA 3 C 3 BMA B 703 BMA 3 n C MAN 4 C 4 MAN B 704 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 A CYS 53 1_555 B SG CYS 108 B CYS 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf2 A SG CYS 81 A CYS 108 1_555 A SG CYS 108 A CYS 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf3 A SG CYS 94 A CYS 121 1_555 A SG CYS 120 A CYS 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 B SG CYS 10 B CYS 511 1_555 B SG CYS 55 B CYS 556 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf5 B SG CYS 100 B CYS 601 1_555 B SG CYS 107 B CYS 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? covale ? covale1 A ND2 ASN 201 A ASN 228 1_555 G C1 NAG . A NAG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale2 A ND2 ASN 211 A ASN 238 1_555 E C1 NAG . A NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale3 A ND2 ASN 230 A ASN 257 1_555 D C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale4 A ND2 ASN 241 A ASN 268 1_555 F C1 NAG . A NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale5 B ND2 ASN 62 B ASN 563 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale6 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale7 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale8 C O6 BMA . C BMA 3 1_555 C C1 MAN . C MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # _atom_sites.entry_id 7SSR _atom_sites.fract_transf_matrix[1][1] 0.008767 _atom_sites.fract_transf_matrix[1][2] 0.005061 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010123 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003246 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG A 1 601 601 NAG NAG . E 4 NAG A 1 602 602 NAG NAG . F 4 NAG A 1 603 603 NAG NAG . G 4 NAG A 1 604 604 NAG NAG . H 5 EDO A 1 605 606 EDO EDO . I 6 ACT A 1 606 607 ACT ACT . J 6 ACT A 1 607 608 ACT ACT . K 7 ZTL B 1 701 605 ZTL 093 . L 8 HOH A 1 701 199 HOH HOH . L 8 HOH A 2 702 6 HOH HOH . L 8 HOH A 3 703 27 HOH HOH . L 8 HOH A 4 704 83 HOH HOH . L 8 HOH A 5 705 163 HOH HOH . L 8 HOH A 6 706 55 HOH HOH . L 8 HOH A 7 707 24 HOH HOH . L 8 HOH A 8 708 22 HOH HOH . L 8 HOH A 9 709 76 HOH HOH . L 8 HOH A 10 710 98 HOH HOH . L 8 HOH A 11 711 96 HOH HOH . L 8 HOH A 12 712 82 HOH HOH . L 8 HOH A 13 713 46 HOH HOH . L 8 HOH A 14 714 38 HOH HOH . L 8 HOH A 15 715 91 HOH HOH . L 8 HOH A 16 716 60 HOH HOH . L 8 HOH A 17 717 44 HOH HOH . L 8 HOH A 18 718 33 HOH HOH . L 8 HOH A 19 719 93 HOH HOH . L 8 HOH A 20 720 8 HOH HOH . L 8 HOH A 21 721 115 HOH HOH . L 8 HOH A 22 722 118 HOH HOH . L 8 HOH A 23 723 102 HOH HOH . L 8 HOH A 24 724 87 HOH HOH . L 8 HOH A 25 725 188 HOH HOH . L 8 HOH A 26 726 129 HOH HOH . L 8 HOH A 27 727 18 HOH HOH . L 8 HOH A 28 728 25 HOH HOH . L 8 HOH A 29 729 114 HOH HOH . L 8 HOH A 30 730 112 HOH HOH . L 8 HOH A 31 731 67 HOH HOH . L 8 HOH A 32 732 23 HOH HOH . L 8 HOH A 33 733 1 HOH HOH . L 8 HOH A 34 734 37 HOH HOH . L 8 HOH A 35 735 45 HOH HOH . L 8 HOH A 36 736 166 HOH HOH . L 8 HOH A 37 737 66 HOH HOH . L 8 HOH A 38 738 77 HOH HOH . L 8 HOH A 39 739 36 HOH HOH . L 8 HOH A 40 740 71 HOH HOH . L 8 HOH A 41 741 169 HOH HOH . L 8 HOH A 42 742 15 HOH HOH . L 8 HOH A 43 743 70 HOH HOH . L 8 HOH A 44 744 65 HOH HOH . L 8 HOH A 45 745 7 HOH HOH . L 8 HOH A 46 746 12 HOH HOH . L 8 HOH A 47 747 113 HOH HOH . L 8 HOH A 48 748 72 HOH HOH . L 8 HOH A 49 749 75 HOH HOH . L 8 HOH A 50 750 206 HOH HOH . L 8 HOH A 51 751 61 HOH HOH . L 8 HOH A 52 752 108 HOH HOH . L 8 HOH A 53 753 63 HOH HOH . L 8 HOH A 54 754 121 HOH HOH . L 8 HOH A 55 755 147 HOH HOH . L 8 HOH A 56 756 120 HOH HOH . L 8 HOH A 57 757 162 HOH HOH . L 8 HOH A 58 758 17 HOH HOH . L 8 HOH A 59 759 78 HOH HOH . L 8 HOH A 60 760 106 HOH HOH . L 8 HOH A 61 761 205 HOH HOH . L 8 HOH A 62 762 94 HOH HOH . L 8 HOH A 63 763 58 HOH HOH . L 8 HOH A 64 764 109 HOH HOH . L 8 HOH A 65 765 197 HOH HOH . L 8 HOH A 66 766 74 HOH HOH . L 8 HOH A 67 767 156 HOH HOH . L 8 HOH A 68 768 119 HOH HOH . L 8 HOH A 69 769 110 HOH HOH . L 8 HOH A 70 770 170 HOH HOH . L 8 HOH A 71 771 155 HOH HOH . L 8 HOH A 72 772 28 HOH HOH . L 8 HOH A 73 773 40 HOH HOH . L 8 HOH A 74 774 32 HOH HOH . L 8 HOH A 75 775 92 HOH HOH . L 8 HOH A 76 776 160 HOH HOH . L 8 HOH A 77 777 116 HOH HOH . L 8 HOH A 78 778 125 HOH HOH . L 8 HOH A 79 779 122 HOH HOH . L 8 HOH A 80 780 53 HOH HOH . L 8 HOH A 81 781 111 HOH HOH . L 8 HOH A 82 782 103 HOH HOH . L 8 HOH A 83 783 107 HOH HOH . L 8 HOH A 84 784 79 HOH HOH . L 8 HOH A 85 785 81 HOH HOH . L 8 HOH A 86 786 62 HOH HOH . L 8 HOH A 87 787 127 HOH HOH . L 8 HOH A 88 788 31 HOH HOH . L 8 HOH A 89 789 198 HOH HOH . L 8 HOH A 90 790 99 HOH HOH . L 8 HOH A 91 791 128 HOH HOH . L 8 HOH A 92 792 182 HOH HOH . L 8 HOH A 93 793 126 HOH HOH . L 8 HOH A 94 794 51 HOH HOH . L 8 HOH A 95 795 154 HOH HOH . L 8 HOH A 96 796 168 HOH HOH . L 8 HOH A 97 797 90 HOH HOH . L 8 HOH A 98 798 159 HOH HOH . L 8 HOH A 99 799 167 HOH HOH . L 8 HOH A 100 800 187 HOH HOH . L 8 HOH A 101 801 88 HOH HOH . M 8 HOH B 1 801 140 HOH HOH . M 8 HOH B 2 802 130 HOH HOH . M 8 HOH B 3 803 181 HOH HOH . M 8 HOH B 4 804 11 HOH HOH . M 8 HOH B 5 805 124 HOH HOH . M 8 HOH B 6 806 42 HOH HOH . M 8 HOH B 7 807 50 HOH HOH . M 8 HOH B 8 808 19 HOH HOH . M 8 HOH B 9 809 138 HOH HOH . M 8 HOH B 10 810 146 HOH HOH . M 8 HOH B 11 811 136 HOH HOH . M 8 HOH B 12 812 54 HOH HOH . M 8 HOH B 13 813 49 HOH HOH . M 8 HOH B 14 814 5 HOH HOH . M 8 HOH B 15 815 131 HOH HOH . M 8 HOH B 16 816 57 HOH HOH . M 8 HOH B 17 817 214 HOH HOH . M 8 HOH B 18 818 35 HOH HOH . M 8 HOH B 19 819 153 HOH HOH . M 8 HOH B 20 820 179 HOH HOH . M 8 HOH B 21 821 9 HOH HOH . M 8 HOH B 22 822 95 HOH HOH . M 8 HOH B 23 823 149 HOH HOH . M 8 HOH B 24 824 4 HOH HOH . M 8 HOH B 25 825 13 HOH HOH . M 8 HOH B 26 826 180 HOH HOH . M 8 HOH B 27 827 196 HOH HOH . M 8 HOH B 28 828 10 HOH HOH . M 8 HOH B 29 829 16 HOH HOH . M 8 HOH B 30 830 30 HOH HOH . M 8 HOH B 31 831 2 HOH HOH . M 8 HOH B 32 832 47 HOH HOH . M 8 HOH B 33 833 143 HOH HOH . M 8 HOH B 34 834 137 HOH HOH . M 8 HOH B 35 835 14 HOH HOH . M 8 HOH B 36 836 84 HOH HOH . M 8 HOH B 37 837 43 HOH HOH . M 8 HOH B 38 838 48 HOH HOH . M 8 HOH B 39 839 80 HOH HOH . M 8 HOH B 40 840 34 HOH HOH . M 8 HOH B 41 841 208 HOH HOH . M 8 HOH B 42 842 39 HOH HOH . M 8 HOH B 43 843 86 HOH HOH . M 8 HOH B 44 844 132 HOH HOH . M 8 HOH B 45 845 26 HOH HOH . M 8 HOH B 46 846 133 HOH HOH . M 8 HOH B 47 847 152 HOH HOH . M 8 HOH B 48 848 52 HOH HOH . M 8 HOH B 49 849 20 HOH HOH . M 8 HOH B 50 850 134 HOH HOH . M 8 HOH B 51 851 193 HOH HOH . M 8 HOH B 52 852 161 HOH HOH . M 8 HOH B 53 853 145 HOH HOH . M 8 HOH B 54 854 41 HOH HOH . M 8 HOH B 55 855 201 HOH HOH . M 8 HOH B 56 856 85 HOH HOH . M 8 HOH B 57 857 202 HOH HOH . M 8 HOH B 58 858 21 HOH HOH . M 8 HOH B 59 859 139 HOH HOH . M 8 HOH B 60 860 135 HOH HOH . M 8 HOH B 61 861 210 HOH HOH . M 8 HOH B 62 862 144 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . H 5 -51.546 17.785 5.148 1 81.42 ? C1 EDO 605 A 1 HETATM 2 O O1 EDO . . . H 5 -50.126 17.92 5.294 1 91.26 ? O1 EDO 605 A 1 HETATM 3 C C2 EDO . . . H 5 -51.867 16.627 4.208 1 77.52 ? C2 EDO 605 A 1 HETATM 4 O O2 EDO . . . H 5 -51.696 15.371 4.881 1 85.06 ? O2 EDO 605 A 1 # _model_server_stats.io_time_ms 121 _model_server_stats.parse_time_ms 36 _model_server_stats.create_model_time_ms 42 _model_server_stats.query_time_ms 607 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #