data_7STE # _model_server_result.job_id 5grSTWbJlnKa4R4xZpsJMA _model_server_result.datetime_utc '2024-10-18 15:22:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ste # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":801}' # _entry.id 7STE # _exptl.entry_id 7STE _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7STE _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7STE _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 E OE2 GLU 187 A GLU 187 1_555 K MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc2 J O2G ATP . A ATP 801 1_555 K MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.777 ? metalc ? metalc3 J O2B ATP . A ATP 801 1_555 K MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? metalc ? metalc4 J O3B ATP . A ATP 801 1_555 K MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc5 J O1A ATP . A ATP 801 1_555 K MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.952 ? metalc ? metalc6 J O2A ATP . A ATP 801 1_555 K MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc7 J O3A ATP . A ATP 801 1_555 K MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.754 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 114 n n PG O2G ATP sing 115 n n PG O3G ATP sing 116 n n PG O3B ATP sing 117 n n O2G HOG2 ATP sing 118 n n O3G HOG3 ATP sing 119 n n PB O1B ATP doub 120 n n PB O2B ATP sing 121 n n PB O3B ATP sing 122 n n PB O3A ATP sing 123 n n O2B HOB2 ATP sing 124 n n PA O1A ATP doub 125 n n PA O2A ATP sing 126 n n PA O3A ATP sing 127 n n PA O5' ATP sing 128 n n O2A HOA2 ATP sing 129 n n O5' C5' ATP sing 130 n n C5' C4' ATP sing 131 n n C5' "H5'1" ATP sing 132 n n C5' "H5'2" ATP sing 133 n n C4' O4' ATP sing 134 n n C4' C3' ATP sing 135 n n C4' H4' ATP sing 136 n n O4' C1' ATP sing 137 n n C3' O3' ATP sing 138 n n C3' C2' ATP sing 139 n n C3' H3' ATP sing 140 n n O3' HO3' ATP sing 141 n n C2' O2' ATP sing 142 n n C2' C1' ATP sing 143 n n C2' H2' ATP sing 144 n n O2' HO2' ATP sing 145 n n C1' N9 ATP sing 146 n n C1' H1' ATP sing 147 n n N9 C8 ATP sing 148 n y N9 C4 ATP sing 149 n y C8 N7 ATP doub 150 n y C8 H8 ATP sing 151 n n N7 C5 ATP sing 152 n y C5 C6 ATP sing 153 n y C5 C4 ATP doub 154 n y C6 N6 ATP sing 155 n n C6 N1 ATP doub 156 n y N6 HN61 ATP sing 157 n n N6 HN62 ATP sing 158 n n N1 C2 ATP sing 159 n y C2 N3 ATP doub 160 n y C2 H2 ATP sing 161 n n N3 C4 ATP sing 162 n y # _atom_sites.entry_id 7STE _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 ADP B 1 401 401 ADP ADP . G 6 ADP C 1 401 804 ADP ADP . H 6 ADP D 1 801 801 ADP ADP . I 6 ADP E 1 401 401 ADP ADP . J 7 ATP A 1 801 801 ATP ATP . K 8 MG A 1 802 802 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . J 7 185.673 142.261 190.652 1 210.49 ? PG ATP 801 A 1 HETATM 2 O O1G ATP . . . J 7 184.483 142.023 189.787 1 210.49 ? O1G ATP 801 A 1 HETATM 3 O O2G ATP . . . J 7 186.769 143.091 189.974 1 210.49 ? O2G ATP 801 A 1 HETATM 4 O O3G ATP . . . J 7 185.333 142.893 192.007 1 210.49 ? O3G ATP 801 A 1 HETATM 5 P PB ATP . . . J 7 187.184 139.693 190.317 1 210.49 ? PB ATP 801 A 1 HETATM 6 O O1B ATP . . . J 7 186.321 138.913 189.407 1 210.49 ? O1B ATP 801 A 1 HETATM 7 O O2B ATP . . . J 7 188.431 140.305 189.679 1 210.49 ? O2B ATP 801 A 1 HETATM 8 O O3B ATP . . . J 7 186.388 140.878 191.022 1 210.49 ? O3B ATP 801 A 1 HETATM 9 P PA ATP . . . J 7 188.098 139.116 193.073 1 210.49 ? PA ATP 801 A 1 HETATM 10 O O1A ATP . . . J 7 189.554 139.336 193.187 1 210.49 ? O1A ATP 801 A 1 HETATM 11 O O2A ATP . . . J 7 187.225 140.262 193.584 1 210.49 ? O2A ATP 801 A 1 HETATM 12 O O3A ATP . . . J 7 187.668 138.834 191.566 1 210.49 ? O3A ATP 801 A 1 HETATM 13 O O5' ATP . . . J 7 187.673 137.791 193.822 1 210.49 ? O5' ATP 801 A 1 HETATM 14 C C5' ATP . . . J 7 186.295 137.366 193.869 1 210.49 ? C5' ATP 801 A 1 HETATM 15 C C4' ATP . . . J 7 185.639 137.845 195.141 1 210.49 ? C4' ATP 801 A 1 HETATM 16 O O4' ATP . . . J 7 185.1 136.672 195.792 1 210.49 ? O4' ATP 801 A 1 HETATM 17 C C3' ATP . . . J 7 186.66 138.388 196.138 1 210.49 ? C3' ATP 801 A 1 HETATM 18 O O3' ATP . . . J 7 185.902 139.089 197.114 1 210.49 ? O3' ATP 801 A 1 HETATM 19 C C2' ATP . . . J 7 187.136 137.113 196.825 1 210.49 ? C2' ATP 801 A 1 HETATM 20 O O2' ATP . . . J 7 187.504 137.489 198.144 1 210.49 ? O2' ATP 801 A 1 HETATM 21 C C1' ATP . . . J 7 185.797 136.405 196.994 1 210.49 ? C1' ATP 801 A 1 HETATM 22 N N9 ATP . . . J 7 185.952 134.957 197.08 1 210.49 ? N9 ATP 801 A 1 HETATM 23 C C8 ATP . . . J 7 185.441 134.135 198.051 1 210.49 ? C8 ATP 801 A 1 HETATM 24 N N7 ATP . . . J 7 185.731 132.867 197.887 1 210.49 ? N7 ATP 801 A 1 HETATM 25 C C5 ATP . . . J 7 186.488 132.852 196.726 1 210.49 ? C5 ATP 801 A 1 HETATM 26 C C6 ATP . . . J 7 187.107 131.809 196.009 1 210.49 ? C6 ATP 801 A 1 HETATM 27 N N6 ATP . . . J 7 187.057 130.523 196.373 1 210.49 ? N6 ATP 801 A 1 HETATM 28 N N1 ATP . . . J 7 187.787 132.135 194.888 1 210.49 ? N1 ATP 801 A 1 HETATM 29 C C2 ATP . . . J 7 187.841 133.417 194.518 1 210.49 ? C2 ATP 801 A 1 HETATM 30 N N3 ATP . . . J 7 187.3 134.482 195.112 1 210.49 ? N3 ATP 801 A 1 HETATM 31 C C4 ATP . . . J 7 186.632 134.132 196.217 1 210.49 ? C4 ATP 801 A 1 HETATM 32 H "H5'1" ATP . . . J 7 186.253 136.398 193.831 1 210.49 ? "H5'1" ATP 801 A 1 HETATM 33 H "H5'2" ATP . . . J 7 185.821 137.736 193.108 1 210.49 ? "H5'2" ATP 801 A 1 HETATM 34 H H4' ATP . . . J 7 184.955 138.504 194.947 1 210.49 ? H4' ATP 801 A 1 HETATM 35 H H3' ATP . . . J 7 187.37 138.925 195.752 1 210.49 ? H3' ATP 801 A 1 HETATM 36 H HO3' ATP . . . J 7 186.285 139.839 197.232 1 210.49 ? HO3' ATP 801 A 1 HETATM 37 H H2' ATP . . . J 7 187.818 136.619 196.344 1 210.49 ? H2' ATP 801 A 1 HETATM 38 H HO2' ATP . . . J 7 187.106 138.222 198.311 1 210.49 ? HO2' ATP 801 A 1 HETATM 39 H H1' ATP . . . J 7 185.321 136.744 197.768 1 210.49 ? H1' ATP 801 A 1 HETATM 40 H H8 ATP . . . J 7 184.932 134.449 198.763 1 210.49 ? H8 ATP 801 A 1 HETATM 41 H HN61 ATP . . . J 7 186.701 130.302 197.123 1 210.49 ? HN61 ATP 801 A 1 HETATM 42 H HN62 ATP . . . J 7 187.38 129.917 195.855 1 210.49 ? HN62 ATP 801 A 1 HETATM 43 H H2 ATP . . . J 7 188.321 133.591 193.741 1 210.49 ? H2 ATP 801 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 40 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #