data_7STQ # _model_server_result.job_id -v7FgHqC1EJh269B5wlj_Q _model_server_result.datetime_utc '2024-11-28 08:21:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7stq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":702}' # _entry.id 7STQ # _exptl.entry_id 7STQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7STQ _cell.length_a 178.129 _cell.length_b 178.129 _cell.length_c 184.76 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7STQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_666 -y+1,-x+1,-z+4/3 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 89.0645 154.264239 246.346667 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PRO 254 A PRO 339 1_555 A N CSD 255 A CSD 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C CSD 255 A CSD 340 1_555 A N ASP 256 A ASP 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? metalc ? metalc1 A OD1 ASP 453 A ASP 538 1_555 B MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? metalc ? metalc2 A O MET 458 A MET 543 1_555 F MG MG . A MG 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.813 ? metalc ? metalc3 A O MET 458 A MET 543 1_555 F MG MG . A MG 705 10_666 ? ? ? ? ? ? ? ? ? ? ? ? 2.717 ? metalc ? metalc4 A OD1 ASN 480 A ASN 565 1_555 B MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? metalc ? metalc5 A O HIS 482 A HIS 567 1_555 B MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc6 B MG MG . A MG 701 1_555 E O13 TZD . A TZD 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc7 B MG MG . A MG 701 1_555 E O21 TZD . A TZD 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 141 n n PA O2A FAD sing 142 n n PA O5B FAD sing 143 n n PA O3P FAD sing 144 n n O2A HOA2 FAD sing 145 n n O5B C5B FAD sing 146 n n C5B C4B FAD sing 147 n n C5B H51A FAD sing 148 n n C5B H52A FAD sing 149 n n C4B O4B FAD sing 150 n n C4B C3B FAD sing 151 n n C4B H4B FAD sing 152 n n O4B C1B FAD sing 153 n n C3B O3B FAD sing 154 n n C3B C2B FAD sing 155 n n C3B H3B FAD sing 156 n n O3B HO3A FAD sing 157 n n C2B O2B FAD sing 158 n n C2B C1B FAD sing 159 n n C2B H2B FAD sing 160 n n O2B HO2A FAD sing 161 n n C1B N9A FAD sing 162 n n C1B H1B FAD sing 163 n n N9A C8A FAD sing 164 n y N9A C4A FAD sing 165 n y C8A N7A FAD doub 166 n y C8A H8A FAD sing 167 n n N7A C5A FAD sing 168 n y C5A C6A FAD sing 169 n y C5A C4A FAD doub 170 n y C6A N6A FAD sing 171 n n C6A N1A FAD doub 172 n y N6A H61A FAD sing 173 n n N6A H62A FAD sing 174 n n N1A C2A FAD sing 175 n y C2A N3A FAD doub 176 n y C2A H2A FAD sing 177 n n N3A C4A FAD sing 178 n y N1 C2 FAD sing 179 n n N1 C10 FAD doub 180 n n C2 O2 FAD doub 181 n n C2 N3 FAD sing 182 n n N3 C4 FAD sing 183 n n N3 HN3 FAD sing 184 n n C4 O4 FAD doub 185 n n C4 C4X FAD sing 186 n n C4X N5 FAD doub 187 n n C4X C10 FAD sing 188 n n N5 C5X FAD sing 189 n n C5X C6 FAD doub 190 n y C5X C9A FAD sing 191 n y C6 C7 FAD sing 192 n y C6 H6 FAD sing 193 n n C7 C7M FAD sing 194 n n C7 C8 FAD doub 195 n y C7M HM71 FAD sing 196 n n C7M HM72 FAD sing 197 n n C7M HM73 FAD sing 198 n n C8 C8M FAD sing 199 n n C8 C9 FAD sing 200 n y C8M HM81 FAD sing 201 n n C8M HM82 FAD sing 202 n n C8M HM83 FAD sing 203 n n C9 C9A FAD doub 204 n y C9 H9 FAD sing 205 n n C9A N10 FAD sing 206 n n N10 C10 FAD sing 207 n n N10 C1' FAD sing 208 n n C1' C2' FAD sing 209 n n C1' "H1'1" FAD sing 210 n n C1' "H1'2" FAD sing 211 n n C2' O2' FAD sing 212 n n C2' C3' FAD sing 213 n n C2' H2' FAD sing 214 n n O2' HO2' FAD sing 215 n n C3' O3' FAD sing 216 n n C3' C4' FAD sing 217 n n C3' H3' FAD sing 218 n n O3' HO3' FAD sing 219 n n C4' O4' FAD sing 220 n n C4' C5' FAD sing 221 n n C4' H4' FAD sing 222 n n O4' HO4' FAD sing 223 n n C5' O5' FAD sing 224 n n C5' "H5'1" FAD sing 225 n n C5' "H5'2" FAD sing 226 n n O5' P FAD sing 227 n n P O1P FAD doub 228 n n P O2P FAD sing 229 n n P O3P FAD sing 230 n n O2P HOP2 FAD sing 231 n n # _atom_sites.entry_id 7STQ _atom_sites.fract_transf_matrix[1][1] 0.005614 _atom_sites.fract_transf_matrix[1][2] 0.003241 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006482 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005412 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 701 699 MG MG . C 3 FAD A 1 702 701 FAD FAD . D 4 CIE A 1 703 901 CIE CIE . E 5 TZD A 1 704 1001 TZD TZD . F 2 MG A 1 705 1101 MG MG . G 6 NHE A 1 706 1401 NHE NHE . H 7 SO4 A 1 707 1 SO4 SO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . C 3 57.828 67.466 101.037 1 68.93 ? PA FAD 702 A 1 HETATM 2 O O1A FAD . . . C 3 58.087 66.078 101.573 1 61.32 ? O1A FAD 702 A 1 HETATM 3 O O2A FAD . . . C 3 58.493 68.5 101.917 1 76.82 ? O2A FAD 702 A 1 HETATM 4 O O5B FAD . . . C 3 56.172 67.75 100.982 1 94.87 ? O5B FAD 702 A 1 HETATM 5 C C5B FAD . . . C 3 55.362 66.827 100.241 1 74.37 ? C5B FAD 702 A 1 HETATM 6 C C4B FAD . . . C 3 54.429 67.561 99.504 1 64.27 ? C4B FAD 702 A 1 HETATM 7 O O4B FAD . . . C 3 53.763 66.657 98.487 1 82.45 ? O4B FAD 702 A 1 HETATM 8 C C3B FAD . . . C 3 53.277 68.09 100.479 1 80.39 ? C3B FAD 702 A 1 HETATM 9 O O3B FAD . . . C 3 52.712 69.382 99.963 1 69.42 ? O3B FAD 702 A 1 HETATM 10 C C2B FAD . . . C 3 52.257 66.973 100.35 1 67.18 ? C2B FAD 702 A 1 HETATM 11 O O2B FAD . . . C 3 50.888 67.5 100.506 1 84.86 ? O2B FAD 702 A 1 HETATM 12 C C1B FAD . . . C 3 52.499 66.472 98.791 1 75.31 ? C1B FAD 702 A 1 HETATM 13 N N9A FAD . . . C 3 52.167 65.088 98.662 1 69.11 ? N9A FAD 702 A 1 HETATM 14 C C8A FAD . . . C 3 52.517 64.124 99.492 1 68.86 ? C8A FAD 702 A 1 HETATM 15 N N7A FAD . . . C 3 52.029 62.972 99.04 1 65.07 ? N7A FAD 702 A 1 HETATM 16 C C5A FAD . . . C 3 51.355 63.2 97.901 1 74.04 ? C5A FAD 702 A 1 HETATM 17 C C6A FAD . . . C 3 50.636 62.412 96.978 1 77.86 ? C6A FAD 702 A 1 HETATM 18 N N6A FAD . . . C 3 50.502 60.976 97.174 1 86.13 ? N6A FAD 702 A 1 HETATM 19 N N1A FAD . . . C 3 50.082 63.003 95.928 1 73.91 ? N1A FAD 702 A 1 HETATM 20 C C2A FAD . . . C 3 50.187 64.308 95.726 1 74.72 ? C2A FAD 702 A 1 HETATM 21 N N3A FAD . . . C 3 50.856 65.079 96.573 1 71.25 ? N3A FAD 702 A 1 HETATM 22 C C4A FAD . . . C 3 51.444 64.557 97.659 1 71.09 ? C4A FAD 702 A 1 HETATM 23 N N1 FAD . . . C 3 65.717 70.829 99.743 1 84.7 ? N1 FAD 702 A 1 HETATM 24 C C2 FAD . . . C 3 65.925 71.066 98.456 1 76.72 ? C2 FAD 702 A 1 HETATM 25 O O2 FAD . . . C 3 65.03 70.553 97.518 1 73.63 ? O2 FAD 702 A 1 HETATM 26 N N3 FAD . . . C 3 66.961 71.78 98.027 1 76.26 ? N3 FAD 702 A 1 HETATM 27 C C4 FAD . . . C 3 67.832 72.283 98.887 1 76.54 ? C4 FAD 702 A 1 HETATM 28 O O4 FAD . . . C 3 68.924 73.037 98.422 1 81.39 ? O4 FAD 702 A 1 HETATM 29 C C4X FAD . . . C 3 67.654 72.06 100.267 1 84.26 ? C4X FAD 702 A 1 HETATM 30 N N5 FAD . . . C 3 68.513 72.552 101.183 1 87.24 ? N5 FAD 702 A 1 HETATM 31 C C5X FAD . . . C 3 68.468 71.999 102.412 1 76.31 ? C5X FAD 702 A 1 HETATM 32 C C6 FAD . . . C 3 69.56 72.2 103.276 1 81.86 ? C6 FAD 702 A 1 HETATM 33 C C7 FAD . . . C 3 69.536 71.635 104.547 1 71.36 ? C7 FAD 702 A 1 HETATM 34 C C7M FAD . . . C 3 70.717 71.844 105.499 1 63.09 ? C7M FAD 702 A 1 HETATM 35 C C8 FAD . . . C 3 68.442 70.876 104.961 1 66.23 ? C8 FAD 702 A 1 HETATM 36 C C8M FAD . . . C 3 68.432 70.26 106.359 1 54.27 ? C8M FAD 702 A 1 HETATM 37 C C9 FAD . . . C 3 67.359 70.676 104.102 1 96.88 ? C9 FAD 702 A 1 HETATM 38 C C9A FAD . . . C 3 67.385 71.25 102.818 1 83.08 ? C9A FAD 702 A 1 HETATM 39 N N10 FAD . . . C 3 66.346 71.065 101.971 1 71.66 ? N10 FAD 702 A 1 HETATM 40 C C10 FAD . . . C 3 66.564 71.315 100.664 1 80.01 ? C10 FAD 702 A 1 HETATM 41 C C1' FAD . . . C 3 65.209 70.195 102.382 1 76.53 ? C1' FAD 702 A 1 HETATM 42 C C2' FAD . . . C 3 63.954 71.045 102.736 1 64.19 ? C2' FAD 702 A 1 HETATM 43 O O2' FAD . . . C 3 64.049 72.008 103.789 1 73.49 ? O2' FAD 702 A 1 HETATM 44 C C3' FAD . . . C 3 62.557 70.542 102.288 1 75.76 ? C3' FAD 702 A 1 HETATM 45 O O3' FAD . . . C 3 62.372 69.245 102.732 1 74 ? O3' FAD 702 A 1 HETATM 46 C C4' FAD . . . C 3 62.469 70.584 100.759 1 77.61 ? C4' FAD 702 A 1 HETATM 47 O O4' FAD . . . C 3 63.017 71.767 100.302 1 89.25 ? O4' FAD 702 A 1 HETATM 48 C C5' FAD . . . C 3 60.981 70.512 100.321 1 81.26 ? C5' FAD 702 A 1 HETATM 49 O O5' FAD . . . C 3 60.657 69.15 100.021 1 66.23 ? O5' FAD 702 A 1 HETATM 50 P P FAD . . . C 3 59.398 68.86 98.938 1 71.78 ? P FAD 702 A 1 HETATM 51 O O1P FAD . . . C 3 58.568 70.116 98.798 1 71.56 ? O1P FAD 702 A 1 HETATM 52 O O2P FAD . . . C 3 59.953 68.476 97.592 1 88.38 ? O2P FAD 702 A 1 HETATM 53 O O3P FAD . . . C 3 58.436 67.589 99.474 1 68.52 ? O3P FAD 702 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 53 #