data_7SU0 # _model_server_result.job_id qqpeNVrVxkm4_LmLFVg9Lg _model_server_result.datetime_utc '2024-12-28 12:45:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7su0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":201}' # _entry.id 7SU0 # _exptl.entry_id 7SU0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7SU0 _cell.length_a 96.73 _cell.length_b 197.84 _cell.length_c 146.49 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7SU0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 ? trimeric 3 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,G,H,L,M,N 1 1 D,E,F,I,J,K,O,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 C CYS 23 1_555 A SG CYS 94 C CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf2 A SG CYS 50 C CYS 50 1_555 A SG CYS 68 C CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf3 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf4 B SG CYS 145 H CYS 140 1_555 B SG CYS 201 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf5 C SG CYS 23 L CYS 23 1_555 C SG CYS 89 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? disulf ? disulf6 C SG CYS 135 L CYS 134 1_555 C SG CYS 195 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf7 D SG CYS 23 D CYS 23 1_555 D SG CYS 94 D CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf8 D SG CYS 50 D CYS 50 1_555 D SG CYS 68 D CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf9 E SG CYS 22 I CYS 22 1_555 E SG CYS 96 I CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf10 E SG CYS 145 I CYS 140 1_555 E SG CYS 201 I CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf11 F SG CYS 23 M CYS 23 1_555 F SG CYS 89 M CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? disulf ? disulf12 F SG CYS 135 M CYS 134 1_555 F SG CYS 195 M CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A ND2 ASN 78 C ASN 78 1_555 G C1 NAG . C NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale2 A ND2 ASN 110 C ASN 110 1_555 H C1 NAG . C NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale3 B C PCA 1 H PCA 1 1_555 B N VAL 2 H VAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 D ND2 ASN 78 D ASN 78 1_555 I C1 NAG . D NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale5 E C PCA 1 I PCA 1 1_555 E N VAL 2 I VAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 254 n n C1 O1 NAG sing 255 n n C1 O5 NAG sing 256 n n C1 H1 NAG sing 257 n n C2 C3 NAG sing 258 n n C2 N2 NAG sing 259 n n C2 H2 NAG sing 260 n n C3 C4 NAG sing 261 n n C3 O3 NAG sing 262 n n C3 H3 NAG sing 263 n n C4 C5 NAG sing 264 n n C4 O4 NAG sing 265 n n C4 H4 NAG sing 266 n n C5 C6 NAG sing 267 n n C5 O5 NAG sing 268 n n C5 H5 NAG sing 269 n n C6 O6 NAG sing 270 n n C6 H61 NAG sing 271 n n C6 H62 NAG sing 272 n n C7 C8 NAG sing 273 n n C7 N2 NAG sing 274 n n C7 O7 NAG doub 275 n n C8 H81 NAG sing 276 n n C8 H82 NAG sing 277 n n C8 H83 NAG sing 278 n n N2 HN2 NAG sing 279 n n O1 HO1 NAG sing 280 n n O3 HO3 NAG sing 281 n n O4 HO4 NAG sing 282 n n O6 HO6 NAG sing 283 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7SU0 _atom_sites.fract_transf_matrix[1][1] 0.010338 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005055 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006826 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 NAG C 1 201 201 NAG NAG . H 4 NAG C 1 202 301 NAG NAG . I 4 NAG D 1 201 201 NAG NAG . J 5 FLC I 1 301 1 FLC FLC . K 6 PEG M 1 301 1 PEG PEG . L 7 HOH C 1 301 12 HOH HOH . M 7 HOH H 1 301 17 HOH HOH . M 7 HOH H 2 302 11 HOH HOH . M 7 HOH H 3 303 18 HOH HOH . M 7 HOH H 4 304 13 HOH HOH . M 7 HOH H 5 305 14 HOH HOH . M 7 HOH H 6 306 15 HOH HOH . M 7 HOH H 7 307 3 HOH HOH . N 7 HOH L 1 301 5 HOH HOH . N 7 HOH L 2 302 25 HOH HOH . N 7 HOH L 3 303 32 HOH HOH . N 7 HOH L 4 304 16 HOH HOH . N 7 HOH L 5 305 31 HOH HOH . N 7 HOH L 6 306 30 HOH HOH . N 7 HOH L 7 307 29 HOH HOH . N 7 HOH L 8 308 33 HOH HOH . N 7 HOH L 9 309 28 HOH HOH . N 7 HOH L 10 310 8 HOH HOH . N 7 HOH L 11 311 10 HOH HOH . N 7 HOH L 12 312 4 HOH HOH . N 7 HOH L 13 313 6 HOH HOH . N 7 HOH L 14 314 27 HOH HOH . N 7 HOH L 15 315 7 HOH HOH . O 7 HOH I 1 401 24 HOH HOH . O 7 HOH I 2 402 9 HOH HOH . O 7 HOH I 3 403 19 HOH HOH . O 7 HOH I 4 404 22 HOH HOH . O 7 HOH I 5 405 23 HOH HOH . O 7 HOH I 6 406 21 HOH HOH . O 7 HOH I 7 407 35 HOH HOH . P 7 HOH M 1 401 36 HOH HOH . P 7 HOH M 2 402 37 HOH HOH . P 7 HOH M 3 403 38 HOH HOH . P 7 HOH M 4 404 20 HOH HOH . P 7 HOH M 5 405 34 HOH HOH . P 7 HOH M 6 406 26 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . G 4 9.995 -15.388 32.856 1 61.42 ? C1 NAG 201 C 1 HETATM 2 C C2 NAG . . . G 4 8.916 -14.316 32.661 1 57.55 ? C2 NAG 201 C 1 HETATM 3 C C3 NAG . . . G 4 8.52 -13.738 34.003 1 55.06 ? C3 NAG 201 C 1 HETATM 4 C C4 NAG . . . G 4 7.982 -14.856 34.884 1 57.52 ? C4 NAG 201 C 1 HETATM 5 C C5 NAG . . . G 4 9.09 -15.882 35.109 1 54.58 ? C5 NAG 201 C 1 HETATM 6 C C6 NAG . . . G 4 8.655 -17.068 35.939 1 54.05 ? C6 NAG 201 C 1 HETATM 7 C C7 NAG . . . G 4 9.216 -13.322 30.434 1 67.19 ? C7 NAG 201 C 1 HETATM 8 C C8 NAG . . . G 4 9.702 -12.128 29.667 1 60.76 ? C8 NAG 201 C 1 HETATM 9 N N2 NAG . . . G 4 9.347 -13.259 31.763 1 62.15 ? N2 NAG 201 C 1 HETATM 10 O O3 NAG . . . G 4 7.562 -12.712 33.786 1 56.23 ? O3 NAG 201 C 1 HETATM 11 O O4 NAG . . . G 4 7.503 -14.353 36.125 1 65.54 ? O4 NAG 201 C 1 HETATM 12 O O5 NAG . . . G 4 9.527 -16.4 33.841 1 60.98 ? O5 NAG 201 C 1 HETATM 13 O O6 NAG . . . G 4 7.332 -16.907 36.438 1 65.64 ? O6 NAG 201 C 1 HETATM 14 O O7 NAG . . . G 4 8.733 -14.302 29.873 1 73.19 ? O7 NAG 201 C 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #