data_7SU8 # _model_server_result.job_id m06CR0t1lQ6Ofx0g4aIrDg _model_server_result.datetime_utc '2024-11-26 17:21:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7su8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":603}' # _entry.id 7SU8 # _exptl.entry_id 7SU8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 195.179 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-6-HYDROXYMETHYL-7,8-DIHYDRO-3H-PTERIDIN-4-ONE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7SU8 _cell.length_a 72.604 _cell.length_b 72.604 _cell.length_c 105.96 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7SU8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression B,E,F,G,H,I,K 1 1,2,3,4 A,C,D,J 1 5,6,7,8 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_445 -x-1,-y-1,z -1 0 0 0 -1 0 0 0 1 -72.604 -72.604 0 3 'crystal symmetry operation' 3_455 -y-1,x,z 0 -1 0 1 0 0 0 0 1 -72.604 0 0 4 'crystal symmetry operation' 4_545 y,-x-1,z 0 1 0 -1 0 0 0 0 1 0 -72.604 0 5 'crystal symmetry operation' 5_444 x-1/2,y-1/2,z-1/2 1 0 0 0 1 0 0 0 1 -36.302 -36.302 -52.98 6 'crystal symmetry operation' 6_444 -x-1/2,-y-1/2,z-1/2 -1 0 0 0 -1 0 0 0 1 -36.302 -36.302 -52.98 7 'crystal symmetry operation' 7_444 -y-1/2,x-1/2,z-1/2 0 -1 0 1 0 0 0 0 1 -36.302 -36.302 -52.98 8 'crystal symmetry operation' 8_444 y-1/2,-x-1/2,z-1/2 0 1 0 -1 0 0 0 0 1 -36.302 -36.302 -52.98 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 74 A CYS 50 1_555 C C4 NEN . A NEN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.764 ? covale ? covale2 B SG CYS 74 B CYS 50 1_555 F C4 NEN . B NEN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? # _chem_comp.formula 'C7 H9 N5 O2' _chem_comp.formula_weight 195.179 _chem_comp.id PH2 _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-6-HYDROXYMETHYL-7,8-DIHYDRO-3H-PTERIDIN-4-ONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 PH2 doub 276 n n N1 C9 PH2 sing 277 n n C2 C3 PH2 sing 278 n n C2 C11 PH2 sing 279 n n C3 N4 PH2 sing 280 n n C3 H31 PH2 sing 281 n n C3 H32 PH2 sing 282 n n N4 C10 PH2 sing 283 n n N4 HN4 PH2 sing 284 n n N5 C6 PH2 doub 285 n y N5 C10 PH2 sing 286 n y C6 N6 PH2 sing 287 n n C6 N7 PH2 sing 288 n y N6 HN61 PH2 sing 289 n n N6 HN62 PH2 sing 290 n n N7 C8 PH2 sing 291 n y N7 HN7 PH2 sing 292 n n C8 O8 PH2 doub 293 n n C8 C9 PH2 sing 294 n y C9 C10 PH2 doub 295 n y C11 O4 PH2 sing 296 n n C11 H111 PH2 sing 297 n n C11 H112 PH2 sing 298 n n O4 HO4 PH2 sing 299 n n # _atom_sites.entry_id 7SU8 _atom_sites.fract_transf_matrix[1][1] 0.013773 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013773 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009438 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NEN A 1 501 501 NEN NEQ . D 3 PH2 A 1 502 201 PH2 LIG . E 4 MPD B 1 601 601 MPD MPD . F 2 NEN B 1 602 501 NEN NEQ . G 3 PH2 B 1 603 201 PH2 LIG . H 5 TRS B 1 604 301 TRS TRS . I 4 MPD B 1 605 401 MPD MPD . J 6 HOH A 1 601 3 HOH HOH . J 6 HOH A 2 602 17 HOH HOH . J 6 HOH A 3 603 56 HOH HOH . J 6 HOH A 4 604 62 HOH HOH . J 6 HOH A 5 605 11 HOH HOH . J 6 HOH A 6 606 26 HOH HOH . J 6 HOH A 7 607 21 HOH HOH . J 6 HOH A 8 608 45 HOH HOH . J 6 HOH A 9 609 57 HOH HOH . J 6 HOH A 10 610 22 HOH HOH . J 6 HOH A 11 611 7 HOH HOH . J 6 HOH A 12 612 2 HOH HOH . J 6 HOH A 13 613 47 HOH HOH . J 6 HOH A 14 614 58 HOH HOH . J 6 HOH A 15 615 23 HOH HOH . J 6 HOH A 16 616 40 HOH HOH . J 6 HOH A 17 617 46 HOH HOH . J 6 HOH A 18 618 20 HOH HOH . J 6 HOH A 19 619 9 HOH HOH . J 6 HOH A 20 620 53 HOH HOH . J 6 HOH A 21 621 25 HOH HOH . J 6 HOH A 22 622 24 HOH HOH . J 6 HOH A 23 623 50 HOH HOH . J 6 HOH A 24 624 10 HOH HOH . J 6 HOH A 25 625 8 HOH HOH . J 6 HOH A 26 626 29 HOH HOH . J 6 HOH A 27 627 30 HOH HOH . J 6 HOH A 28 628 28 HOH HOH . K 6 HOH B 1 701 60 HOH HOH . K 6 HOH B 2 702 37 HOH HOH . K 6 HOH B 3 703 42 HOH HOH . K 6 HOH B 4 704 35 HOH HOH . K 6 HOH B 5 705 4 HOH HOH . K 6 HOH B 6 706 63 HOH HOH . K 6 HOH B 7 707 59 HOH HOH . K 6 HOH B 8 708 16 HOH HOH . K 6 HOH B 9 709 32 HOH HOH . K 6 HOH B 10 710 15 HOH HOH . K 6 HOH B 11 711 34 HOH HOH . K 6 HOH B 12 712 64 HOH HOH . K 6 HOH B 13 713 51 HOH HOH . K 6 HOH B 14 714 31 HOH HOH . K 6 HOH B 15 715 5 HOH HOH . K 6 HOH B 16 716 41 HOH HOH . K 6 HOH B 17 717 19 HOH HOH . K 6 HOH B 18 718 48 HOH HOH . K 6 HOH B 19 719 38 HOH HOH . K 6 HOH B 20 720 61 HOH HOH . K 6 HOH B 21 721 27 HOH HOH . K 6 HOH B 22 722 18 HOH HOH . K 6 HOH B 23 723 6 HOH HOH . K 6 HOH B 24 724 44 HOH HOH . K 6 HOH B 25 725 43 HOH HOH . K 6 HOH B 26 726 33 HOH HOH . K 6 HOH B 27 727 1 HOH HOH . K 6 HOH B 28 728 52 HOH HOH . K 6 HOH B 29 729 49 HOH HOH . K 6 HOH B 30 730 39 HOH HOH . K 6 HOH B 31 731 13 HOH HOH . K 6 HOH B 32 732 36 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PH2 . . . G 3 -36.878 -11.928 -54.707 0.82 75.62 ? N1 PH2 603 B 1 HETATM 2 C C2 PH2 . . . G 3 -38.186 -12.112 -54.774 0.82 67.27 ? C2 PH2 603 B 1 HETATM 3 C C3 PH2 . . . G 3 -38.906 -12.483 -53.642 0.82 59.74 ? C3 PH2 603 B 1 HETATM 4 N N4 PH2 . . . G 3 -38.297 -12.664 -52.464 0.82 57.22 ? N4 PH2 603 B 1 HETATM 5 N N5 PH2 . . . G 3 -36.291 -12.656 -51.205 0.82 64.51 ? N5 PH2 603 B 1 HETATM 6 C C6 PH2 . . . G 3 -34.986 -12.475 -51.133 0.82 61.9 ? C6 PH2 603 B 1 HETATM 7 N N6 PH2 . . . G 3 -34.354 -12.672 -49.865 0.82 57.97 ? N6 PH2 603 B 1 HETATM 8 N N7 PH2 . . . G 3 -34.243 -12.111 -52.21 0.82 68.25 ? N7 PH2 603 B 1 HETATM 9 C C8 PH2 . . . G 3 -34.823 -11.926 -53.385 0.82 60.86 ? C8 PH2 603 B 1 HETATM 10 O O8 PH2 . . . G 3 -34.042 -11.539 -54.539 0.82 53.69 ? O8 PH2 603 B 1 HETATM 11 C C9 PH2 . . . G 3 -36.256 -12.113 -53.505 0.82 68.64 ? C9 PH2 603 B 1 HETATM 12 C C10 PH2 . . . G 3 -36.963 -12.481 -52.39 0.82 64.27 ? C10 PH2 603 B 1 HETATM 13 C C11 PH2 . . . G 3 -38.96 -11.908 -56.133 0.82 75.06 ? C11 PH2 603 B 1 HETATM 14 O O4 PH2 . . . G 3 -39.554 -10.567 -56.093 0.82 86.86 ? O4 PH2 603 B 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 42 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 14 #