data_7SV2 # _model_server_result.job_id U9EkbqOzT8X6uNoQ0gOncQ _model_server_result.datetime_utc '2024-11-08 18:52:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7sv2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":603}' # _entry.id 7SV2 # _exptl.entry_id 7SV2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 478.648 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(3aS,4R,5S,6R,8R,9R,9aR,10R)-6-ethyl-5-hydroxy-4,6,9,10-tetramethyl-1-oxodecahydro-3a,9-propanocyclopenta[8]annulen-8-yl [(5-amino-1H-1,2,4-triazol-3-yl)sulfanyl]acetate' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7SV2 _cell.length_a 104.786 _cell.length_b 134.3 _cell.length_c 275.274 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7SV2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,Q 1 1 B,H,I,J,R 2 1 C,K,L,M,S 3 1 D,N,O,P,T 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 G N N ? 3 I N N ? 3 J N N ? 3 L N N ? 3 M N N ? 3 O N N ? 3 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 420 A CYS 441 1_555 E FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc2 B SG CYS 420 B CYS 441 1_555 H FE HEM . B HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc3 C SG CYS 420 C CYS 441 1_555 K FE HEM . C HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc4 D SG CYS 420 D CYS 441 1_555 N FE HEM . D HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? # _chem_comp.formula 'C24 H38 N4 O4 S' _chem_comp.formula_weight 478.648 _chem_comp.id MWY _chem_comp.mon_nstd_flag . _chem_comp.name '(3aS,4R,5S,6R,8R,9R,9aR,10R)-6-ethyl-5-hydroxy-4,6,9,10-tetramethyl-1-oxodecahydro-3a,9-propanocyclopenta[8]annulen-8-yl [(5-amino-1H-1,2,4-triazol-3-yl)sulfanyl]acetate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O13 C12 MWY doub 319 n n C21 C06 MWY sing 320 n n C12 C14 MWY sing 321 n n C12 C11 MWY sing 322 n n C08 C07 MWY sing 323 n n C08 C09 MWY sing 324 n n C14 C15 MWY sing 325 n n C07 C06 MWY sing 326 n n C07 C20 MWY sing 327 n n C06 C11 MWY sing 328 n n C06 C05 MWY sing 329 n n O24 C23 MWY doub 330 n n C11 C10 MWY sing 331 n n C09 C10 MWY sing 332 n n S26 C27 MWY sing 333 n n S26 C25 MWY sing 334 n n C15 C10 MWY sing 335 n n C23 C25 MWY sing 336 n n C23 O22 MWY sing 337 n n C10 C16 MWY sing 338 n n N28 C27 MWY sing 339 n y N28 C29 MWY doub 340 n y C05 O22 MWY sing 341 n n C05 C04 MWY sing 342 n n C27 N31 MWY doub 343 n y C29 N32 MWY sing 344 n n C29 N30 MWY sing 345 n y C04 C03 MWY sing 346 n n N31 N30 MWY sing 347 n y C16 C17 MWY sing 348 n n C16 C19 MWY sing 349 n n C17 C03 MWY sing 350 n n C17 O18 MWY sing 351 n n C03 C33 MWY sing 352 n n C03 C02 MWY sing 353 n n C02 C01 MWY sing 354 n n C01 H1 MWY sing 355 n n C01 H2 MWY sing 356 n n C01 H3 MWY sing 357 n n C02 H4 MWY sing 358 n n C02 H5 MWY sing 359 n n C04 H6 MWY sing 360 n n C04 H7 MWY sing 361 n n C05 H8 MWY sing 362 n n C07 H9 MWY sing 363 n n C08 H10 MWY sing 364 n n C08 H11 MWY sing 365 n n C09 H12 MWY sing 366 n n C09 H13 MWY sing 367 n n C11 H14 MWY sing 368 n n C14 H15 MWY sing 369 n n C14 H16 MWY sing 370 n n C15 H17 MWY sing 371 n n C15 H18 MWY sing 372 n n C16 H19 MWY sing 373 n n C17 H20 MWY sing 374 n n C19 H21 MWY sing 375 n n C19 H22 MWY sing 376 n n C19 H23 MWY sing 377 n n C20 H24 MWY sing 378 n n C20 H25 MWY sing 379 n n C20 H26 MWY sing 380 n n C21 H27 MWY sing 381 n n C21 H28 MWY sing 382 n n C21 H29 MWY sing 383 n n C25 H30 MWY sing 384 n n C25 H31 MWY sing 385 n n C33 H32 MWY sing 386 n n C33 H33 MWY sing 387 n n C33 H34 MWY sing 388 n n N32 H36 MWY sing 389 n n N32 H37 MWY sing 390 n n O18 H38 MWY sing 391 n n N30 H35 MWY sing 392 n n # _atom_sites.entry_id 7SV2 _atom_sites.fract_transf_matrix[1][1] 0.009543 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007446 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003633 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 HEM A 1 601 601 HEM HEM . F 3 MWY A 1 602 603 MWY MWY . G 3 MWY A 1 603 604 MWY MWY . H 2 HEM B 1 601 601 HEM HEM . I 3 MWY B 1 602 603 MWY MWY . J 3 MWY B 1 603 604 MWY MWY . K 2 HEM C 1 601 601 HEM HEM . L 3 MWY C 1 602 603 MWY MWY . M 3 MWY C 1 603 604 MWY MWY . N 2 HEM D 1 601 601 HEM HEM . O 3 MWY D 1 602 603 MWY MWY . P 3 MWY D 1 603 604 MWY MWY . Q 4 HOH A 1 701 706 HOH HOH . Q 4 HOH A 2 702 733 HOH HOH . Q 4 HOH A 3 703 766 HOH HOH . Q 4 HOH A 4 704 845 HOH HOH . Q 4 HOH A 5 705 842 HOH HOH . Q 4 HOH A 6 706 815 HOH HOH . Q 4 HOH A 7 707 825 HOH HOH . Q 4 HOH A 8 708 721 HOH HOH . Q 4 HOH A 9 709 840 HOH HOH . Q 4 HOH A 10 710 741 HOH HOH . Q 4 HOH A 11 711 710 HOH HOH . Q 4 HOH A 12 712 848 HOH HOH . Q 4 HOH A 13 713 744 HOH HOH . Q 4 HOH A 14 714 739 HOH HOH . Q 4 HOH A 15 715 861 HOH HOH . Q 4 HOH A 16 716 780 HOH HOH . Q 4 HOH A 17 717 757 HOH HOH . Q 4 HOH A 18 718 857 HOH HOH . Q 4 HOH A 19 719 847 HOH HOH . Q 4 HOH A 20 720 747 HOH HOH . Q 4 HOH A 21 721 819 HOH HOH . Q 4 HOH A 22 722 722 HOH HOH . Q 4 HOH A 23 723 713 HOH HOH . Q 4 HOH A 24 724 788 HOH HOH . Q 4 HOH A 25 725 772 HOH HOH . Q 4 HOH A 26 726 720 HOH HOH . Q 4 HOH A 27 727 806 HOH HOH . Q 4 HOH A 28 728 726 HOH HOH . Q 4 HOH A 29 729 738 HOH HOH . Q 4 HOH A 30 730 735 HOH HOH . Q 4 HOH A 31 731 798 HOH HOH . Q 4 HOH A 32 732 800 HOH HOH . Q 4 HOH A 33 733 858 HOH HOH . Q 4 HOH A 34 734 778 HOH HOH . Q 4 HOH A 35 735 777 HOH HOH . Q 4 HOH A 36 736 755 HOH HOH . Q 4 HOH A 37 737 839 HOH HOH . Q 4 HOH A 38 738 761 HOH HOH . Q 4 HOH A 39 739 841 HOH HOH . Q 4 HOH A 40 740 808 HOH HOH . Q 4 HOH A 41 741 785 HOH HOH . Q 4 HOH A 42 742 781 HOH HOH . Q 4 HOH A 43 743 791 HOH HOH . Q 4 HOH A 44 744 829 HOH HOH . Q 4 HOH A 45 745 856 HOH HOH . Q 4 HOH A 46 746 793 HOH HOH . Q 4 HOH A 47 747 884 HOH HOH . R 4 HOH B 1 701 776 HOH HOH . R 4 HOH B 2 702 709 HOH HOH . R 4 HOH B 3 703 762 HOH HOH . R 4 HOH B 4 704 725 HOH HOH . R 4 HOH B 5 705 712 HOH HOH . R 4 HOH B 6 706 814 HOH HOH . R 4 HOH B 7 707 836 HOH HOH . R 4 HOH B 8 708 885 HOH HOH . R 4 HOH B 9 709 708 HOH HOH . R 4 HOH B 10 710 787 HOH HOH . R 4 HOH B 11 711 767 HOH HOH . R 4 HOH B 12 712 859 HOH HOH . R 4 HOH B 13 713 769 HOH HOH . R 4 HOH B 14 714 809 HOH HOH . R 4 HOH B 15 715 746 HOH HOH . R 4 HOH B 16 716 714 HOH HOH . R 4 HOH B 17 717 737 HOH HOH . R 4 HOH B 18 718 732 HOH HOH . R 4 HOH B 19 719 782 HOH HOH . R 4 HOH B 20 720 863 HOH HOH . R 4 HOH B 21 721 740 HOH HOH . R 4 HOH B 22 722 811 HOH HOH . R 4 HOH B 23 723 771 HOH HOH . R 4 HOH B 24 724 867 HOH HOH . R 4 HOH B 25 725 844 HOH HOH . R 4 HOH B 26 726 835 HOH HOH . R 4 HOH B 27 727 804 HOH HOH . R 4 HOH B 28 728 850 HOH HOH . R 4 HOH B 29 729 838 HOH HOH . R 4 HOH B 30 730 865 HOH HOH . R 4 HOH B 31 731 827 HOH HOH . R 4 HOH B 32 732 855 HOH HOH . S 4 HOH C 1 701 728 HOH HOH . S 4 HOH C 2 702 752 HOH HOH . S 4 HOH C 3 703 880 HOH HOH . S 4 HOH C 4 704 774 HOH HOH . S 4 HOH C 5 705 837 HOH HOH . S 4 HOH C 6 706 730 HOH HOH . S 4 HOH C 7 707 877 HOH HOH . S 4 HOH C 8 708 711 HOH HOH . S 4 HOH C 9 709 768 HOH HOH . S 4 HOH C 10 710 724 HOH HOH . S 4 HOH C 11 711 707 HOH HOH . S 4 HOH C 12 712 870 HOH HOH . S 4 HOH C 13 713 731 HOH HOH . S 4 HOH C 14 714 748 HOH HOH . S 4 HOH C 15 715 719 HOH HOH . S 4 HOH C 16 716 773 HOH HOH . S 4 HOH C 17 717 765 HOH HOH . S 4 HOH C 18 718 881 HOH HOH . S 4 HOH C 19 719 749 HOH HOH . S 4 HOH C 20 720 854 HOH HOH . S 4 HOH C 21 721 851 HOH HOH . S 4 HOH C 22 722 775 HOH HOH . S 4 HOH C 23 723 883 HOH HOH . S 4 HOH C 24 724 807 HOH HOH . S 4 HOH C 25 725 799 HOH HOH . T 4 HOH D 1 701 822 HOH HOH . T 4 HOH D 2 702 879 HOH HOH . T 4 HOH D 3 703 833 HOH HOH . T 4 HOH D 4 704 786 HOH HOH . T 4 HOH D 5 705 717 HOH HOH . T 4 HOH D 6 706 750 HOH HOH . T 4 HOH D 7 707 779 HOH HOH . T 4 HOH D 8 708 866 HOH HOH . T 4 HOH D 9 709 716 HOH HOH . T 4 HOH D 10 710 743 HOH HOH . T 4 HOH D 11 711 812 HOH HOH . T 4 HOH D 12 712 715 HOH HOH . T 4 HOH D 13 713 742 HOH HOH . T 4 HOH D 14 714 729 HOH HOH . T 4 HOH D 15 715 727 HOH HOH . T 4 HOH D 16 716 820 HOH HOH . T 4 HOH D 17 717 849 HOH HOH . T 4 HOH D 18 718 796 HOH HOH . T 4 HOH D 19 719 763 HOH HOH . T 4 HOH D 20 720 736 HOH HOH . T 4 HOH D 21 721 753 HOH HOH . T 4 HOH D 22 722 846 HOH HOH . T 4 HOH D 23 723 882 HOH HOH . T 4 HOH D 24 724 810 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 MWY . . . P 3 26.297 50.331 14.476 1 43.56 ? C01 MWY 603 D 1 HETATM 2 C C02 MWY . . . P 3 26.768 51.641 15.085 1 47.42 ? C02 MWY 603 D 1 HETATM 3 C C03 MWY . . . P 3 25.669 52.7 15.313 1 50.66 ? C03 MWY 603 D 1 HETATM 4 C C04 MWY . . . P 3 24.91 53.07 13.986 1 46.05 ? C04 MWY 603 D 1 HETATM 5 C C05 MWY . . . P 3 25.772 53.656 12.855 1 51.29 ? C05 MWY 603 D 1 HETATM 6 C C06 MWY . . . P 3 25.578 55.176 12.567 1 53.45 ? C06 MWY 603 D 1 HETATM 7 C C07 MWY . . . P 3 26.697 55.751 11.648 1 45.89 ? C07 MWY 603 D 1 HETATM 8 C C08 MWY . . . P 3 28.067 55.671 12.321 1 46.22 ? C08 MWY 603 D 1 HETATM 9 C C09 MWY . . . P 3 28.1 56.431 13.65 1 44.99 ? C09 MWY 603 D 1 HETATM 10 C C10 MWY . . . P 3 27.043 55.969 14.668 1 44.51 ? C10 MWY 603 D 1 HETATM 11 C C11 MWY . . . P 3 25.672 55.961 13.923 1 49.23 ? C11 MWY 603 D 1 HETATM 12 C C12 MWY . . . P 3 25.349 57.456 13.854 1 57.3 ? C12 MWY 603 D 1 HETATM 13 C C14 MWY . . . P 3 25.997 58.14 15.032 1 46.35 ? C14 MWY 603 D 1 HETATM 14 C C15 MWY . . . P 3 26.847 57.081 15.711 1 52.52 ? C15 MWY 603 D 1 HETATM 15 C C16 MWY . . . P 3 27.454 54.639 15.363 1 47.81 ? C16 MWY 603 D 1 HETATM 16 C C17 MWY . . . P 3 26.252 53.941 16.06 1 48.49 ? C17 MWY 603 D 1 HETATM 17 C C19 MWY . . . P 3 28.621 54.858 16.32 1 43.8 ? C19 MWY 603 D 1 HETATM 18 C C20 MWY . . . P 3 26.747 55.212 10.219 1 45.64 ? C20 MWY 603 D 1 HETATM 19 C C21 MWY . . . P 3 24.193 55.357 11.923 1 44.03 ? C21 MWY 603 D 1 HETATM 20 C C23 MWY . . . P 3 26.332 52.074 11.147 1 57.56 ? C23 MWY 603 D 1 HETATM 21 C C25 MWY . . . P 3 25.881 51.471 9.844 1 52.13 ? C25 MWY 603 D 1 HETATM 22 C C27 MWY . . . P 3 26.012 49.335 8.138 1 45.05 ? C27 MWY 603 D 1 HETATM 23 C C29 MWY . . . P 3 25.458 47.849 6.759 1 47.47 ? C29 MWY 603 D 1 HETATM 24 C C33 MWY . . . P 3 24.652 52.098 16.291 1 46.69 ? C33 MWY 603 D 1 HETATM 25 N N28 MWY . . . P 3 26.51 48.25 7.485 1 42.14 ? N28 MWY 603 D 1 HETATM 26 N N30 MWY . . . P 3 24.417 48.664 6.966 1 46.06 ? N30 MWY 603 D 1 HETATM 27 N N31 MWY . . . P 3 24.763 49.636 7.858 1 51.47 ? N31 MWY 603 D 1 HETATM 28 N N32 MWY . . . P 3 25.432 46.773 5.965 1 43.71 ? N32 MWY 603 D 1 HETATM 29 O O13 MWY . . . P 3 24.694 58.023 13.005 1 56.87 ? O13 MWY 603 D 1 HETATM 30 O O18 MWY . . . P 3 26.588 53.573 17.391 1 50.05 ? O18 MWY 603 D 1 HETATM 31 O O22 MWY . . . P 3 25.416 52.927 11.641 1 52.93 ? O22 MWY 603 D 1 HETATM 32 O O24 MWY . . . P 3 27.382 51.841 11.68 1 52.81 ? O24 MWY 603 D 1 HETATM 33 S S26 MWY . . . P 3 27.02 50.188 9.283 1 49.62 ? S26 MWY 603 D 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 252 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 33 #