data_7SV7 # _model_server_result.job_id zw3YGDTCRhnhy3TFJGVbHg _model_server_result.datetime_utc '2025-02-05 17:09:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7sv7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":1509}' # _entry.id 7SV7 # _exptl.entry_id 7SV7 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 170.335 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECANE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7SV7 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7SV7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 I N N ? 6 J N N ? 6 K N N ? 6 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 465 A THR 465 1_555 C MG MG . A MG 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc2 A OE1 GLN 493 A GLN 493 1_555 C MG MG . A MG 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc3 A OG SER 1251 A SER 1251 1_555 D MG MG . A MG 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc4 A OE1 GLN 1291 A GLN 1291 1_555 D MG MG . A MG 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc5 C MG MG . A MG 1501 1_555 E O3G ATP . A ATP 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc6 C MG MG . A MG 1501 1_555 E O2B ATP . A ATP 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc7 D MG MG . A MG 1502 1_555 F O2B ATP . A ATP 1504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? metalc ? metalc8 D MG MG . A MG 1502 1_555 F O3G ATP . A ATP 1504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc9 D MG MG . A MG 1502 1_555 F O3B ATP . A ATP 1504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.761 ? # _chem_comp.formula 'C12 H26' _chem_comp.formula_weight 170.335 _chem_comp.id D12 _chem_comp.mon_nstd_flag . _chem_comp.name DODECANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 D12 sing 320 n n C1 H11 D12 sing 321 n n C1 H12 D12 sing 322 n n C1 H13 D12 sing 323 n n C2 C3 D12 sing 324 n n C2 H21 D12 sing 325 n n C2 H22 D12 sing 326 n n C3 C4 D12 sing 327 n n C3 H31 D12 sing 328 n n C3 H32 D12 sing 329 n n C4 C5 D12 sing 330 n n C4 H41 D12 sing 331 n n C4 H42 D12 sing 332 n n C5 C6 D12 sing 333 n n C5 H51 D12 sing 334 n n C5 H52 D12 sing 335 n n C6 C7 D12 sing 336 n n C6 H61 D12 sing 337 n n C6 H62 D12 sing 338 n n C7 C8 D12 sing 339 n n C7 H71 D12 sing 340 n n C7 H72 D12 sing 341 n n C8 C9 D12 sing 342 n n C8 H81 D12 sing 343 n n C8 H82 D12 sing 344 n n C9 C10 D12 sing 345 n n C9 H91 D12 sing 346 n n C9 H92 D12 sing 347 n n C10 C11 D12 sing 348 n n C10 H101 D12 sing 349 n n C10 H102 D12 sing 350 n n C11 C12 D12 sing 351 n n C11 H111 D12 sing 352 n n C11 H112 D12 sing 353 n n C12 H121 D12 sing 354 n n C12 H122 D12 sing 355 n n C12 H123 D12 sing 356 n n # _atom_sites.entry_id 7SV7 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG A 1 1501 1 MG MG . D 3 MG A 1 1502 2 MG MG . E 4 ATP A 1 1503 3 ATP ATP . F 4 ATP A 1 1504 4 ATP ATP . G 5 DD9 A 1 1505 1601 DD9 ACC . H 5 DD9 A 1 1506 1701 DD9 ACC . I 6 D12 A 1 1507 1901 D12 ACC . J 6 D12 A 1 1508 2001 D12 ACC . K 6 D12 A 1 1509 2101 D12 ACC . L 7 CLR A 1 1510 2601 CLR CLR . M 7 CLR A 1 1511 2901 CLR CLR . N 8 C14 A 1 1512 3001 C14 ACC . O 9 PJ8 A 1 1513 3101 PJ8 ACC . P 6 D12 A 1 1514 3201 D12 ACC . Q 10 CV6 A 1 1515 1801 CV6 VX6 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 D12 . . . K 6 163.017 165.878 184.384 1 27.91 ? C1 D12 1509 A 1 HETATM 2 C C2 D12 . . . K 6 163.54 167.165 183.753 1 27.91 ? C2 D12 1509 A 1 HETATM 3 C C3 D12 . . . K 6 163.891 166.989 182.279 1 27.91 ? C3 D12 1509 A 1 HETATM 4 C C4 D12 . . . K 6 162.692 166.551 181.444 1 27.91 ? C4 D12 1509 A 1 HETATM 5 C C5 D12 . . . K 6 162.984 166.569 179.946 1 27.91 ? C5 D12 1509 A 1 HETATM 6 C C6 D12 . . . K 6 163.027 167.984 179.373 1 27.91 ? C6 D12 1509 A 1 HETATM 7 C C7 D12 . . . K 6 163.203 167.977 177.857 1 27.91 ? C7 D12 1509 A 1 HETATM 8 C C8 D12 . . . K 6 163.085 169.368 177.24 1 27.91 ? C8 D12 1509 A 1 HETATM 9 C C9 D12 . . . K 6 163.137 169.32 175.715 1 27.91 ? C9 D12 1509 A 1 HETATM 10 C C10 D12 . . . K 6 162.747 170.649 175.074 1 27.91 ? C10 D12 1509 A 1 HETATM 11 C C11 D12 . . . K 6 162.814 170.595 173.55 1 27.91 ? C11 D12 1509 A 1 HETATM 12 C C12 D12 . . . K 6 162.362 171.9 172.899 1 27.91 ? C12 D12 1509 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 354 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 12 #