data_7SVR # _model_server_result.job_id Qmuf1Oc_2Pzjn8z73C87Pg _model_server_result.datetime_utc '2025-03-28 00:34:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7svr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1501}' # _entry.id 7SVR # _exptl.entry_id 7SVR _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 452.407 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Lumacaftor _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7SVR _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7SVR _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H18 F2 N2 O5' _chem_comp.formula_weight 452.407 _chem_comp.id VX8 _chem_comp.mon_nstd_flag . _chem_comp.name Lumacaftor _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '3-(6-{[1-(2,2-difluoro-2H-1,3-benzodioxol-5-yl)cyclopropane-1-carbonyl]amino}-3-methylpyridin-2-yl)benzoic acid;VX-809' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C7 VX8 doub 374 n n O1 C7 VX8 sing 375 n n C7 C6 VX8 sing 376 n n C18 C19 VX8 doub 377 n y C18 C17 VX8 sing 378 n y C19 C14 VX8 sing 379 n y C6 C8 VX8 doub 380 n y C6 C5 VX8 sing 381 n y C21 C13 VX8 sing 382 n n C21 C22 VX8 sing 383 n n C8 C9 VX8 sing 384 n y C17 O4 VX8 sing 385 n n C17 C16 VX8 doub 386 n y O4 C20 VX8 sing 387 n n C5 C4 VX8 doub 388 n y C9 C10 VX8 doub 389 n y C14 C13 VX8 sing 390 n n C14 C15 VX8 doub 391 n y C13 C22 VX8 sing 392 n n C13 C12 VX8 sing 393 n n F1 C20 VX8 sing 394 n n C4 C10 VX8 sing 395 n y C4 C3 VX8 sing 396 n n C12 O3 VX8 doub 397 n n C12 N2 VX8 sing 398 n n C16 C15 VX8 sing 399 n y C16 O5 VX8 sing 400 n n C20 F2 VX8 sing 401 n n C20 O5 VX8 sing 402 n n N1 C3 VX8 doub 403 n y N1 C11 VX8 sing 404 n y N2 C11 VX8 sing 405 n n C3 C2 VX8 sing 406 n y C11 C23 VX8 doub 407 n y C2 C1 VX8 sing 408 n n C2 C24 VX8 doub 409 n y C23 C24 VX8 sing 410 n y C1 H1 VX8 sing 411 n n C1 H2 VX8 sing 412 n n C1 H3 VX8 sing 413 n n C10 H4 VX8 sing 414 n n C15 H5 VX8 sing 415 n n C18 H6 VX8 sing 416 n n C19 H7 VX8 sing 417 n n C21 H8 VX8 sing 418 n n C21 H9 VX8 sing 419 n n C22 H10 VX8 sing 420 n n C22 H11 VX8 sing 421 n n C23 H12 VX8 sing 422 n n C24 H13 VX8 sing 423 n n C5 H14 VX8 sing 424 n n C8 H15 VX8 sing 425 n n C9 H16 VX8 sing 426 n n N2 H17 VX8 sing 427 n n O1 H18 VX8 sing 428 n n # _atom_sites.entry_id 7SVR _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id VX8 _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 1501 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id VX8 _pdbx_nonpoly_scheme.auth_mon_id VX8 _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 VX8 . . . C 3 150.427 135.643 175.308 1 89.03 ? C1 VX8 1501 A 1 HETATM 2 C C10 VX8 . . . C 3 148.89 138.523 172.627 1 89.03 ? C10 VX8 1501 A 1 HETATM 3 C C11 VX8 . . . C 3 152.635 136.735 171.82 1 89.03 ? C11 VX8 1501 A 1 HETATM 4 C C12 VX8 . . . C 3 153.304 136.112 169.519 1 89.03 ? C12 VX8 1501 A 1 HETATM 5 C C13 VX8 . . . C 3 153.985 136.36 168.154 1 89.03 ? C13 VX8 1501 A 1 HETATM 6 C C14 VX8 . . . C 3 153.013 137.198 167.296 1 89.03 ? C14 VX8 1501 A 1 HETATM 7 C C15 VX8 . . . C 3 153.213 138.561 167.139 1 89.03 ? C15 VX8 1501 A 1 HETATM 8 C C16 VX8 . . . C 3 152.316 139.313 166.362 1 89.03 ? C16 VX8 1501 A 1 HETATM 9 C C17 VX8 . . . C 3 151.241 138.698 165.762 1 89.03 ? C17 VX8 1501 A 1 HETATM 10 C C18 VX8 . . . C 3 151.038 137.316 165.929 1 89.03 ? C18 VX8 1501 A 1 HETATM 11 C C19 VX8 . . . C 3 151.926 136.574 166.696 1 89.03 ? C19 VX8 1501 A 1 HETATM 12 C C2 VX8 . . . C 3 151.216 136.035 174.042 1 89.03 ? C2 VX8 1501 A 1 HETATM 13 C C20 VX8 . . . C 3 151.315 140.84 165.021 1 89.03 ? C20 VX8 1501 A 1 HETATM 14 C C21 VX8 . . . C 3 155.414 136.856 168.387 1 89.03 ? C21 VX8 1501 A 1 HETATM 15 C C22 VX8 . . . C 3 155.17 135.402 167.984 1 89.03 ? C22 VX8 1501 A 1 HETATM 16 C C23 VX8 . . . C 3 153.292 136.032 172.82 1 89.03 ? C23 VX8 1501 A 1 HETATM 17 C C24 VX8 . . . C 3 152.561 135.669 173.954 1 89.03 ? C24 VX8 1501 A 1 HETATM 18 C C3 VX8 . . . C 3 150.629 136.737 172.979 1 89.03 ? C3 VX8 1501 A 1 HETATM 19 C C4 VX8 . . . C 3 149.151 137.196 172.936 1 89.03 ? C4 VX8 1501 A 1 HETATM 20 C C5 VX8 . . . C 3 148.093 136.319 173.145 1 89.03 ? C5 VX8 1501 A 1 HETATM 21 C C6 VX8 . . . C 3 146.787 136.78 173.084 1 89.03 ? C6 VX8 1501 A 1 HETATM 22 C C7 VX8 . . . C 3 145.629 135.812 173.338 1 89.03 ? C7 VX8 1501 A 1 HETATM 23 C C8 VX8 . . . C 3 146.527 138.109 172.788 1 89.03 ? C8 VX8 1501 A 1 HETATM 24 C C9 VX8 . . . C 3 147.582 138.983 172.56 1 89.03 ? C9 VX8 1501 A 1 HETATM 25 F F1 VX8 . . . C 3 150.543 141.938 165.275 1 89.03 ? F1 VX8 1501 A 1 HETATM 26 F F2 VX8 . . . C 3 151.917 140.967 163.804 1 89.03 ? F2 VX8 1501 A 1 HETATM 27 N N1 VX8 . . . C 3 151.361 137.048 171.926 1 89.03 ? N1 VX8 1501 A 1 HETATM 28 N N2 VX8 . . . C 3 153.341 137.114 170.591 1 89.03 ? N2 VX8 1501 A 1 HETATM 29 O O1 VX8 . . . C 3 145.854 134.698 173.879 1 89.03 ? O1 VX8 1501 A 1 HETATM 30 O O2 VX8 . . . C 3 144.456 136.128 173.008 1 89.03 ? O2 VX8 1501 A 1 HETATM 31 O O3 VX8 . . . C 3 152.724 135.093 169.7 1 89.03 ? O3 VX8 1501 A 1 HETATM 32 O O4 VX8 . . . C 3 150.513 139.681 165.05 1 89.03 ? O4 VX8 1501 A 1 HETATM 33 O O5 VX8 . . . C 3 152.28 140.691 166.036 1 89.03 ? O5 VX8 1501 A 1 # _model_server_stats.io_time_ms 96 _model_server_stats.parse_time_ms 89 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 259 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 33 #