data_7SWL # _model_server_result.job_id X4FIalFnII7F-rsABBNrqw _model_server_result.datetime_utc '2025-04-27 16:30:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7swl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"U","auth_seq_id":902}' # _entry.id 7SWL # _exptl.entry_id 7SWL _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7SWL _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7SWL _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 H N N ? 3 I N N ? 3 L N N ? 3 M N N ? 3 P N N ? 3 Q N N ? 3 T N N ? 3 U N N ? 3 Y N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 66 A THR 250 1_555 K MG MG . A MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc2 A OG1 THR 365 A THR 549 1_555 J MG MG . A MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc3 H O2G ATP . A ATP 901 1_555 J MG MG . A MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc4 H O1B ATP . A ATP 901 1_555 J MG MG . A MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc5 I O2G ATP . A ATP 902 1_555 K MG MG . A MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc6 I O1B ATP . A ATP 902 1_555 K MG MG . A MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc7 B OG1 THR 66 B THR 250 1_555 O MG MG . B MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc8 B OG1 THR 365 B THR 549 1_555 N MG MG . B MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc9 L O2G ATP . B ATP 901 1_555 N MG MG . B MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc10 L O1B ATP . B ATP 901 1_555 N MG MG . B MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? metalc ? metalc11 M O2G ATP . B ATP 902 1_555 O MG MG . B MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc12 M O1B ATP . B ATP 902 1_555 O MG MG . B MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc13 C OG1 THR 66 C THR 250 1_555 S MG MG . C MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc14 C OG1 THR 365 C THR 549 1_555 R MG MG . C MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc15 P O2G ATP . C ATP 901 1_555 R MG MG . C MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc16 P O1B ATP . C ATP 901 1_555 R MG MG . C MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? metalc ? metalc17 Q O2G ATP . C ATP 902 1_555 S MG MG . C MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc18 Q O1B ATP . C ATP 902 1_555 S MG MG . C MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? metalc ? metalc19 D OG1 THR 66 D THR 250 1_555 W MG MG . D MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc20 D OG1 THR 365 D THR 549 1_555 V MG MG . D MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc21 T O2G ATP . D ATP 901 1_555 V MG MG . D MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? metalc ? metalc22 T O1B ATP . D ATP 901 1_555 V MG MG . D MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc23 U O2G ATP . D ATP 902 1_555 W MG MG . D MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc24 U O1B ATP . D ATP 902 1_555 W MG MG . D MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? metalc ? metalc25 E OG1 THR 66 E THR 250 1_555 Z MG MG . E MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc26 Y O2G ATP . E ATP 902 1_555 Z MG MG . E MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc27 Y O1B ATP . E ATP 902 1_555 Z MG MG . E MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 114 n n PG O2G ATP sing 115 n n PG O3G ATP sing 116 n n PG O3B ATP sing 117 n n O2G HOG2 ATP sing 118 n n O3G HOG3 ATP sing 119 n n PB O1B ATP doub 120 n n PB O2B ATP sing 121 n n PB O3B ATP sing 122 n n PB O3A ATP sing 123 n n O2B HOB2 ATP sing 124 n n PA O1A ATP doub 125 n n PA O2A ATP sing 126 n n PA O3A ATP sing 127 n n PA O5' ATP sing 128 n n O2A HOA2 ATP sing 129 n n O5' C5' ATP sing 130 n n C5' C4' ATP sing 131 n n C5' "H5'1" ATP sing 132 n n C5' "H5'2" ATP sing 133 n n C4' O4' ATP sing 134 n n C4' C3' ATP sing 135 n n C4' H4' ATP sing 136 n n O4' C1' ATP sing 137 n n C3' O3' ATP sing 138 n n C3' C2' ATP sing 139 n n C3' H3' ATP sing 140 n n O3' HO3' ATP sing 141 n n C2' O2' ATP sing 142 n n C2' C1' ATP sing 143 n n C2' H2' ATP sing 144 n n O2' HO2' ATP sing 145 n n C1' N9 ATP sing 146 n n C1' H1' ATP sing 147 n n N9 C8 ATP sing 148 n y N9 C4 ATP sing 149 n y C8 N7 ATP doub 150 n y C8 H8 ATP sing 151 n n N7 C5 ATP sing 152 n y C5 C6 ATP sing 153 n y C5 C4 ATP doub 154 n y C6 N6 ATP sing 155 n n C6 N1 ATP doub 156 n y N6 HN61 ATP sing 157 n n N6 HN62 ATP sing 158 n n N1 C2 ATP sing 159 n y C2 N3 ATP doub 160 n y C2 H2 ATP sing 161 n n N3 C4 ATP sing 162 n y # _atom_sites.entry_id 7SWL _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 3 ATP A 1 901 901 ATP ATP . I 3 ATP A 1 902 902 ATP ATP . J 4 MG A 1 903 903 MG MG . K 4 MG A 1 904 904 MG MG . L 3 ATP B 1 901 901 ATP ATP . M 3 ATP B 1 902 902 ATP ATP . N 4 MG B 1 903 903 MG MG . O 4 MG B 1 904 904 MG MG . P 3 ATP C 1 901 901 ATP ATP . Q 3 ATP C 1 902 902 ATP ATP . R 4 MG C 1 903 903 MG MG . S 4 MG C 1 904 904 MG MG . T 3 ATP D 1 901 901 ATP ATP . U 3 ATP D 1 902 902 ATP ATP . V 4 MG D 1 903 903 MG MG . W 4 MG D 1 904 904 MG MG . X 5 ADP E 1 901 901 ADP ADP . Y 3 ATP E 1 902 902 ATP ATP . Z 4 MG E 1 903 904 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . U 3 137.034 156.685 163.147 1 18.36 ? PG ATP 902 D 1 HETATM 2 O O1G ATP . . . U 3 137.606 157.86 162.397 1 18.36 ? O1G ATP 902 D 1 HETATM 3 O O2G ATP . . . U 3 135.762 157.005 163.882 1 18.36 ? O2G ATP 902 D 1 HETATM 4 O O3G ATP . . . U 3 138.053 155.977 163.996 1 18.36 ? O3G ATP 902 D 1 HETATM 5 P PB ATP . . . U 3 135.463 154.526 161.931 1 18.36 ? PB ATP 902 D 1 HETATM 6 O O1B ATP . . . U 3 134.87 154.385 163.278 1 18.36 ? O1B ATP 902 D 1 HETATM 7 O O2B ATP . . . U 3 136.033 153.315 161.305 1 18.36 ? O2B ATP 902 D 1 HETATM 8 O O3B ATP . . . U 3 136.635 155.616 161.992 1 18.36 ? O3B ATP 902 D 1 HETATM 9 P PA ATP . . . U 3 132.767 155.258 161.126 1 18.36 ? PA ATP 902 D 1 HETATM 10 O O1A ATP . . . U 3 132.47 156.015 162.368 1 18.36 ? O1A ATP 902 D 1 HETATM 11 O O2A ATP . . . U 3 132.127 153.939 160.93 1 18.36 ? O2A ATP 902 D 1 HETATM 12 O O3A ATP . . . U 3 134.352 155.126 160.934 1 18.36 ? O3A ATP 902 D 1 HETATM 13 O O5' ATP . . . U 3 132.344 156.178 159.877 1 18.36 ? O5' ATP 902 D 1 HETATM 14 C C5' ATP . . . U 3 132.317 155.589 158.578 1 18.36 ? C5' ATP 902 D 1 HETATM 15 C C4' ATP . . . U 3 131.259 156.234 157.724 1 18.36 ? C4' ATP 902 D 1 HETATM 16 O O4' ATP . . . U 3 131.26 155.619 156.416 1 18.36 ? O4' ATP 902 D 1 HETATM 17 C C3' ATP . . . U 3 129.827 156.069 158.199 1 18.36 ? C3' ATP 902 D 1 HETATM 18 O O3' ATP . . . U 3 128.98 157.106 157.743 1 18.36 ? O3' ATP 902 D 1 HETATM 19 C C2' ATP . . . U 3 129.456 154.692 157.656 1 18.36 ? C2' ATP 902 D 1 HETATM 20 O O2' ATP . . . U 3 128.074 154.672 157.328 1 18.36 ? O2' ATP 902 D 1 HETATM 21 C C1' ATP . . . U 3 130.25 154.636 156.35 1 18.36 ? C1' ATP 902 D 1 HETATM 22 N N9 ATP . . . U 3 130.894 153.322 156.143 1 18.36 ? N9 ATP 902 D 1 HETATM 23 C C8 ATP . . . U 3 132.207 152.989 156.361 1 18.36 ? C8 ATP 902 D 1 HETATM 24 N N7 ATP . . . U 3 132.488 151.739 156.087 1 18.36 ? N7 ATP 902 D 1 HETATM 25 C C5 ATP . . . U 3 131.277 151.212 155.663 1 18.36 ? C5 ATP 902 D 1 HETATM 26 C C6 ATP . . . U 3 130.905 149.929 155.228 1 18.36 ? C6 ATP 902 D 1 HETATM 27 N N6 ATP . . . U 3 131.752 148.901 155.148 1 18.36 ? N6 ATP 902 D 1 HETATM 28 N N1 ATP . . . U 3 129.618 149.735 154.875 1 18.36 ? N1 ATP 902 D 1 HETATM 29 C C2 ATP . . . U 3 128.769 150.767 154.956 1 18.36 ? C2 ATP 902 D 1 HETATM 30 N N3 ATP . . . U 3 128.998 152.017 155.348 1 18.36 ? N3 ATP 902 D 1 HETATM 31 C C4 ATP . . . U 3 130.287 152.176 155.693 1 18.36 ? C4 ATP 902 D 1 # _model_server_stats.io_time_ms 108 _model_server_stats.parse_time_ms 45 _model_server_stats.create_model_time_ms 84 _model_server_stats.query_time_ms 1096 _model_server_stats.encode_time_ms 23 _model_server_stats.element_count 31 #