data_7SX3 # _model_server_result.job_id QEONInvZs5tu3EYzpPO-YQ _model_server_result.datetime_utc '2024-11-23 09:58:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7sx3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":2104}' # _entry.id 7SX3 # _exptl.entry_id 7SX3 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 720.012 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7SX3 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7SX3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 H N N ? 7 I N N ? 7 J N N ? 7 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 207 A CYS 207 1_555 A SG CYS 239 A CYS 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 229 A CYS 229 1_555 A SG CYS 245 A CYS 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf3 A SG CYS 1046 A CYS 1046 1_555 A SG CYS 1057 A CYS 1057 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 A SG CYS 1405 A CYS 1405 1_555 A SG CYS 1417 A CYS 1417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf5 B SG CYS 191 B CYS 191 1_555 B SG CYS 261 B CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 B SG CYS 226 B CYS 226 1_555 B SG CYS 313 B CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 B SG CYS 304 B CYS 304 1_555 B SG CYS 341 B CYS 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf8 B SG CYS 324 B CYS 324 1_555 B SG CYS 377 B CYS 377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? disulf ? disulf9 B SG CYS 330 B CYS 330 1_555 B SG CYS 376 B CYS 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf10 B SG CYS 334 B CYS 334 1_555 B SG CYS 361 B CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.923 ? covale ? covale1 A C MET 286 A MET 286 1_555 A N TYS 287 A TYS 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C TYS 287 A TYS 287 1_555 A N ARG 288 A ARG 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 A ND2 ASN 1064 A ASN 1064 1_555 G C1 NAG . A NAG 2102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? # _chem_comp.formula 'C39 H78 N O8 P' _chem_comp.formula_weight 720.012 _chem_comp.id PEV _chem_comp.mon_nstd_flag . _chem_comp.name '(1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PHOSPHATIDYLETHANOLAMINE;1-PALMITOYL-2-OLEOYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C48 C47 PEV sing 265 n n C48 H481 PEV sing 266 n n C48 H482 PEV sing 267 n n C48 H483 PEV sing 268 n n C47 C46 PEV sing 269 n n C47 H471 PEV sing 270 n n C47 H472 PEV sing 271 n n C46 C45 PEV sing 272 n n C46 H461 PEV sing 273 n n C46 H462 PEV sing 274 n n C45 C44 PEV sing 275 n n C45 H451 PEV sing 276 n n C45 H452 PEV sing 277 n n C44 C43 PEV sing 278 n n C44 H441 PEV sing 279 n n C44 H442 PEV sing 280 n n C43 C42 PEV sing 281 n n C43 H431 PEV sing 282 n n C43 H432 PEV sing 283 n n C42 C41 PEV sing 284 n n C42 H421 PEV sing 285 n n C42 H422 PEV sing 286 n n C41 C40 PEV sing 287 n n C41 H411 PEV sing 288 n n C41 H412 PEV sing 289 n n C40 C39 PEV sing 290 n n C40 H401 PEV sing 291 n n C40 H402 PEV sing 292 n n C39 C38 PEV sing 293 n n C39 H391 PEV sing 294 n n C39 H392 PEV sing 295 n n C38 C37 PEV sing 296 n n C38 H381 PEV sing 297 n n C38 H382 PEV sing 298 n n C37 C36 PEV sing 299 n n C37 H371 PEV sing 300 n n C37 H372 PEV sing 301 n n C36 C35 PEV sing 302 n n C36 H361 PEV sing 303 n n C36 H362 PEV sing 304 n n C35 C34 PEV sing 305 n n C35 H351 PEV sing 306 n n C35 H352 PEV sing 307 n n C34 C33 PEV sing 308 n n C34 H341 PEV sing 309 n n C34 H342 PEV sing 310 n n C33 C32 PEV sing 311 n n C33 H331 PEV sing 312 n n C33 H332 PEV sing 313 n n C32 C31 PEV sing 314 n n C32 H321 PEV sing 315 n n C32 H322 PEV sing 316 n n C31 O31 PEV doub 317 n n C31 O2 PEV sing 318 n n O2 C2 PEV sing 319 n n C2 C1 PEV sing 320 n n C2 C3 PEV sing 321 n n C2 H2 PEV sing 322 n n C1 O3P PEV sing 323 n n C1 H11 PEV sing 324 n n C1 H12 PEV sing 325 n n O3P P PEV sing 326 n n P O1P PEV doub 327 n n P O2P PEV sing 328 n n P O4P PEV sing 329 n n O2P HO2P PEV sing 330 n n O4P C4 PEV sing 331 n n C4 C5 PEV sing 332 n n C4 H41 PEV sing 333 n n C4 H42 PEV sing 334 n n C5 N6 PEV sing 335 n n C5 H51 PEV sing 336 n n C5 H52 PEV sing 337 n n N6 HN61 PEV sing 338 n n N6 HN62 PEV sing 339 n n C3 O3 PEV sing 340 n n C3 H31 PEV sing 341 n n C3 H32 PEV sing 342 n n O3 C11 PEV sing 343 n n C11 O11 PEV doub 344 n n C11 C12 PEV sing 345 n n C12 C13 PEV sing 346 n n C12 H121 PEV sing 347 n n C12 H122 PEV sing 348 n n C13 C14 PEV sing 349 n n C13 H131 PEV sing 350 n n C13 H132 PEV sing 351 n n C14 C15 PEV sing 352 n n C14 H141 PEV sing 353 n n C14 H142 PEV sing 354 n n C15 C16 PEV sing 355 n n C15 H151 PEV sing 356 n n C15 H152 PEV sing 357 n n C16 C17 PEV sing 358 n n C16 H161 PEV sing 359 n n C16 H162 PEV sing 360 n n C17 C18 PEV sing 361 n n C17 H171 PEV sing 362 n n C17 H172 PEV sing 363 n n C18 C19 PEV sing 364 n n C18 H181 PEV sing 365 n n C18 H182 PEV sing 366 n n C19 C20 PEV sing 367 n n C19 H191 PEV sing 368 n n C19 H192 PEV sing 369 n n C20 C21 PEV sing 370 n n C20 H201 PEV sing 371 n n C20 H202 PEV sing 372 n n C21 C22 PEV sing 373 n n C21 H211 PEV sing 374 n n C21 H212 PEV sing 375 n n C22 C23 PEV sing 376 n n C22 H221 PEV sing 377 n n C22 H222 PEV sing 378 n n C23 C24 PEV sing 379 n n C23 H231 PEV sing 380 n n C23 H232 PEV sing 381 n n C24 C25 PEV sing 382 n n C24 H241 PEV sing 383 n n C24 H242 PEV sing 384 n n C25 C26 PEV sing 385 n n C25 H251 PEV sing 386 n n C25 H252 PEV sing 387 n n C26 H261 PEV sing 388 n n C26 H262 PEV sing 389 n n C26 H263 PEV sing 390 n n # _atom_sites.entry_id 7SX3 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 NAG A 1 2101 1801 NAG NAG . G 6 NAG A 1 2102 1802 NAG NAG . H 7 PEV A 1 2103 1803 PEV PEV . I 7 PEV A 1 2104 1804 PEV PEV . J 7 PEV A 1 2105 1805 PEV PEV . K 7 PEV A 1 2106 1807 PEV PEV . L 8 PGV A 1 2107 1808 PGV PGV . M 8 PGV A 1 2108 1809 PGV PGV . N 9 Y01 A 1 2109 1901 Y01 Y01 . O 9 Y01 A 1 2110 2001 Y01 Y01 . P 9 Y01 A 1 2111 2101 Y01 Y01 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C44 PEV . . . I 7 194.489 227.004 239.149 1 75.73 ? C44 PEV 2104 A 1 HETATM 2 C C43 PEV . . . I 7 193.916 226.313 237.884 1 75.73 ? C43 PEV 2104 A 1 HETATM 3 C C42 PEV . . . I 7 192.404 226.007 238.055 1 75.73 ? C42 PEV 2104 A 1 HETATM 4 C C41 PEV . . . I 7 192.153 225.127 239.318 1 75.73 ? C41 PEV 2104 A 1 HETATM 5 C C40 PEV . . . I 7 190.642 224.791 239.424 1 75.73 ? C40 PEV 2104 A 1 HETATM 6 C C39 PEV . . . I 7 190.438 223.742 240.558 1 75.73 ? C39 PEV 2104 A 1 HETATM 7 C C38 PEV . . . I 7 188.931 223.472 240.812 1 75.73 ? C38 PEV 2104 A 1 HETATM 8 C C37 PEV . . . I 7 188.247 222.866 239.563 1 75.73 ? C37 PEV 2104 A 1 HETATM 9 C C36 PEV . . . I 7 187.838 221.393 239.854 1 75.73 ? C36 PEV 2104 A 1 HETATM 10 C C35 PEV . . . I 7 186.435 221.366 240.506 1 75.73 ? C35 PEV 2104 A 1 HETATM 11 C C34 PEV . . . I 7 185.949 219.902 240.624 1 75.73 ? C34 PEV 2104 A 1 HETATM 12 C C33 PEV . . . I 7 184.511 219.889 241.193 1 75.73 ? C33 PEV 2104 A 1 HETATM 13 C C32 PEV . . . I 7 183.483 220.109 240.067 1 75.73 ? C32 PEV 2104 A 1 HETATM 14 C C31 PEV . . . I 7 183.401 218.856 239.158 1 75.73 ? C31 PEV 2104 A 1 HETATM 15 O O31 PEV . . . I 7 182.508 218.085 239.302 1 75.73 ? O31 PEV 2104 A 1 HETATM 16 O O2 PEV . . . I 7 184.38 218.631 238.153 1 75.73 ? O2 PEV 2104 A 1 HETATM 17 C C2 PEV . . . I 7 183.853 218.349 236.885 1 75.73 ? C2 PEV 2104 A 1 HETATM 18 C C1 PEV . . . I 7 183.556 216.852 236.771 1 75.73 ? C1 PEV 2104 A 1 HETATM 19 O O3P PEV . . . I 7 182.489 216.656 235.882 1 75.73 ? O3P PEV 2104 A 1 HETATM 20 P P PEV . . . I 7 181.482 215.361 236.11 1 75.73 ? P PEV 2104 A 1 HETATM 21 O O1P PEV . . . I 7 181.846 214.645 237.391 1 75.73 ? O1P PEV 2104 A 1 HETATM 22 O O2P PEV . . . I 7 180.055 215.851 236.204 1 75.73 ? O2P PEV 2104 A 1 HETATM 23 O O4P PEV . . . I 7 181.618 214.316 234.844 1 75.73 ? O4P PEV 2104 A 1 HETATM 24 C C4 PEV . . . I 7 181.784 214.836 233.553 1 75.73 ? C4 PEV 2104 A 1 HETATM 25 C C5 PEV . . . I 7 180.919 214.044 232.576 1 75.73 ? C5 PEV 2104 A 1 HETATM 26 N N6 PEV . . . I 7 181.077 214.583 231.243 1 75.73 ? N6 PEV 2104 A 1 HETATM 27 C C3 PEV . . . I 7 184.87 218.753 235.82 1 75.73 ? C3 PEV 2104 A 1 HETATM 28 O O3 PEV . . . I 7 186.173 218.653 236.362 1 75.73 ? O3 PEV 2104 A 1 HETATM 29 C C11 PEV . . . I 7 187.197 219.133 235.505 1 75.73 ? C11 PEV 2104 A 1 HETATM 30 O O11 PEV . . . I 7 187.978 218.372 235.03 1 75.73 ? O11 PEV 2104 A 1 HETATM 31 C C12 PEV . . . I 7 187.305 220.647 235.192 1 75.73 ? C12 PEV 2104 A 1 HETATM 32 C C13 PEV . . . I 7 188.649 221.191 235.739 1 75.73 ? C13 PEV 2104 A 1 HETATM 33 C C14 PEV . . . I 7 189.114 222.385 234.874 1 75.73 ? C14 PEV 2104 A 1 HETATM 34 C C15 PEV . . . I 7 190.49 222.876 235.381 1 75.73 ? C15 PEV 2104 A 1 HETATM 35 C C16 PEV . . . I 7 191.446 223.179 234.2 1 75.73 ? C16 PEV 2104 A 1 HETATM 36 C C17 PEV . . . I 7 191.759 224.692 234.145 1 75.73 ? C17 PEV 2104 A 1 HETATM 37 C C18 PEV . . . I 7 193.083 224.908 233.375 1 75.73 ? C18 PEV 2104 A 1 HETATM 38 C C19 PEV . . . I 7 193.61 226.341 233.636 1 75.73 ? C19 PEV 2104 A 1 HETATM 39 C C20 PEV . . . I 7 195.135 226.382 233.389 1 75.73 ? C20 PEV 2104 A 1 HETATM 40 C C21 PEV . . . I 7 195.415 226.338 231.871 1 75.73 ? C21 PEV 2104 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 35 _model_server_stats.query_time_ms 224 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 40 #