data_7SX3
#
_model_server_result.job_id            klBoaTS1aXijjTYgNSkuVQ 
_model_server_result.datetime_utc      '2024-11-23 10:07:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7sx3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":2109}' 
#
_entry.id    7SX3 
#
_exptl.entry_id    7SX3 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              486.726 
_entity.id                          9 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CHOLESTEROL HEMISUCCINATE' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7SX3 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7SX3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 9 N N N 
? 9 O N N 
? 9 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 207 A CYS 207 1_555 A SG CYS 239 A CYS 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 A SG CYS 229 A CYS 229 1_555 A SG CYS 245 A CYS 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf3 A SG CYS 1046 A CYS 1046 1_555 A SG CYS 1057 A CYS 1057 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf4 A SG CYS 1405 A CYS 1405 1_555 A SG CYS 1417 A CYS 1417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf5 B SG CYS 191 B CYS 191 1_555 B SG CYS 261 B CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf6 B SG CYS 226 B CYS 226 1_555 B SG CYS 313 B CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf7 B SG CYS 304 B CYS 304 1_555 B SG CYS 341 B CYS 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf8 B SG CYS 324 B CYS 324 1_555 B SG CYS 377 B CYS 377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? 
disulf ? disulf9 B SG CYS 330 B CYS 330 1_555 B SG CYS 376 B CYS 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf10 B SG CYS 334 B CYS 334 1_555 B SG CYS 361 B CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.923 ? 
covale ? covale1 A C MET 286 A MET 286 1_555 A N TYS 287 A TYS 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale2 A C TYS 287 A TYS 287 1_555 A N ARG 288 A ARG 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale3 A ND2 ASN 1064 A ASN 1064 1_555 G C1 NAG . A NAG 2102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
#
_chem_comp.formula           'C31 H50 O4' 
_chem_comp.formula_weight    486.726 
_chem_comp.id                Y01 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CHOLESTEROL HEMISUCCINATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAA CBA Y01 sing 685 n n 
CBA CAB Y01 sing 686 n n 
CBA CAN Y01 sing 687 n n 
CAN CAJ Y01 sing 688 n n 
CAJ CAO Y01 sing 689 n n 
CAO CBB Y01 sing 690 n n 
CBB CAC Y01 sing 691 n n 
CBB CBE Y01 sing 692 n n 
CBE CAP Y01 sing 693 n n 
CBE CBI Y01 sing 694 n n 
CAP CAQ Y01 sing 695 n n 
CAQ CBG Y01 sing 696 n n 
CBG CBI Y01 sing 697 n n 
CBG CBD Y01 sing 698 n n 
CBI CAE Y01 sing 699 n n 
CBI CAU Y01 sing 700 n n 
CAU CAS Y01 sing 701 n n 
CAS CBF Y01 sing 702 n n 
CBF CBD Y01 sing 703 n n 
CBF CBH Y01 sing 704 n n 
CBD CAK Y01 sing 705 n n 
CAK CAI Y01 sing 706 n n 
CAI CAZ Y01 doub 707 n n 
CAZ CAV Y01 sing 708 n n 
CAZ CBH Y01 sing 709 n n 
CAV CBC Y01 sing 710 n n 
CBH CAD Y01 sing 711 n n 
CBH CAT Y01 sing 712 n n 
CAT CAR Y01 sing 713 n n 
CAR CBC Y01 sing 714 n n 
CBC OAW Y01 sing 715 n n 
OAW CAY Y01 sing 716 n n 
CAY OAG Y01 doub 717 n n 
CAY CAM Y01 sing 718 n n 
CAM CAL Y01 sing 719 n n 
CAL CAX Y01 sing 720 n n 
CAX OAH Y01 sing 721 n n 
CAX OAF Y01 doub 722 n n 
CAA HAA1 Y01 sing 723 n n 
CAA HAA2 Y01 sing 724 n n 
CAA HAA3 Y01 sing 725 n n 
CBA HBA Y01 sing 726 n n 
CAB HAB1 Y01 sing 727 n n 
CAB HAB2 Y01 sing 728 n n 
CAB HAB3 Y01 sing 729 n n 
CAN HAN1 Y01 sing 730 n n 
CAN HAN2 Y01 sing 731 n n 
CAJ HAJ1 Y01 sing 732 n n 
CAJ HAJ2 Y01 sing 733 n n 
CAO HAO1 Y01 sing 734 n n 
CAO HAO2 Y01 sing 735 n n 
CBB HBB Y01 sing 736 n n 
CAC HAC1 Y01 sing 737 n n 
CAC HAC2 Y01 sing 738 n n 
CAC HAC3 Y01 sing 739 n n 
CBE HBE Y01 sing 740 n n 
CAP HAP1 Y01 sing 741 n n 
CAP HAP2 Y01 sing 742 n n 
CAQ HAQ1 Y01 sing 743 n n 
CAQ HAQ2 Y01 sing 744 n n 
CBG HBG Y01 sing 745 n n 
CBD HBD Y01 sing 746 n n 
CAE HAE1 Y01 sing 747 n n 
CAE HAE2 Y01 sing 748 n n 
CAE HAE3 Y01 sing 749 n n 
CAU HAU1 Y01 sing 750 n n 
CAU HAU2 Y01 sing 751 n n 
CAS HAS1 Y01 sing 752 n n 
CAS HAS2 Y01 sing 753 n n 
CBF HBF Y01 sing 754 n n 
CAK HAK1 Y01 sing 755 n n 
CAK HAK2 Y01 sing 756 n n 
CAI HAI Y01 sing 757 n n 
CAV HAV1 Y01 sing 758 n n 
CAV HAV2 Y01 sing 759 n n 
CBC HBC Y01 sing 760 n n 
CAD HAD1 Y01 sing 761 n n 
CAD HAD2 Y01 sing 762 n n 
CAD HAD3 Y01 sing 763 n n 
CAT HAT1 Y01 sing 764 n n 
CAT HAT2 Y01 sing 765 n n 
CAR HAR1 Y01 sing 766 n n 
CAR HAR2 Y01 sing 767 n n 
CAM HAM1 Y01 sing 768 n n 
CAM HAM2 Y01 sing 769 n n 
CAL HAL1 Y01 sing 770 n n 
CAL HAL2 Y01 sing 771 n n 
OAH HAH Y01 sing 772 n n 
#
_atom_sites.entry_id                     7SX3 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 6 NAG A 1 2101 1801 NAG NAG . 
G 6 NAG A 1 2102 1802 NAG NAG . 
H 7 PEV A 1 2103 1803 PEV PEV . 
I 7 PEV A 1 2104 1804 PEV PEV . 
J 7 PEV A 1 2105 1805 PEV PEV . 
K 7 PEV A 1 2106 1807 PEV PEV . 
L 8 PGV A 1 2107 1808 PGV PGV . 
M 8 PGV A 1 2108 1809 PGV PGV . 
N 9 Y01 A 1 2109 1901 Y01 Y01 . 
O 9 Y01 A 1 2110 2001 Y01 Y01 . 
P 9 Y01 A 1 2111 2101 Y01 Y01 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA Y01 . . . N 9 192.416 262.919 240.045 1 96.03 ? CAA Y01 2109 A 1 
HETATM 2 C CBA Y01 . . . N 9 192.542 263.619 238.7 1 96.03 ? CBA Y01 2109 A 1 
HETATM 3 C CAB Y01 . . . N 9 193.148 262.672 237.655 1 96.03 ? CAB Y01 2109 A 1 
HETATM 4 C CAN Y01 . . . N 9 191.238 264.301 238.177 1 96.03 ? CAN Y01 2109 A 1 
HETATM 5 C CAJ Y01 . . . N 9 189.863 263.778 238.673 1 96.03 ? CAJ Y01 2109 A 1 
HETATM 6 C CAO Y01 . . . N 9 188.858 264.922 238.86 1 96.03 ? CAO Y01 2109 A 1 
HETATM 7 C CBB Y01 . . . N 9 188.676 265.334 240.36 1 96.03 ? CBB Y01 2109 A 1 
HETATM 8 C CAC Y01 . . . N 9 189.955 265.978 240.879 1 96.03 ? CAC Y01 2109 A 1 
HETATM 9 C CBE Y01 . . . N 9 187.418 266.266 240.554 1 96.03 ? CBE Y01 2109 A 1 
HETATM 10 C CAP Y01 . . . N 9 187.327 267.377 239.422 1 96.03 ? CAP Y01 2109 A 1 
HETATM 11 C CAQ Y01 . . . N 9 185.851 267.452 239.004 1 96.03 ? CAQ Y01 2109 A 1 
HETATM 12 C CBG Y01 . . . N 9 185.175 266.962 240.272 1 96.03 ? CBG Y01 2109 A 1 
HETATM 13 C CBI Y01 . . . N 9 185.959 265.696 240.612 1 96.03 ? CBI Y01 2109 A 1 
HETATM 14 C CAE Y01 . . . N 9 185.689 264.544 239.641 1 96.03 ? CAE Y01 2109 A 1 
HETATM 15 C CAU Y01 . . . N 9 185.498 265.313 242.02 1 96.03 ? CAU Y01 2109 A 1 
HETATM 16 C CAS Y01 . . . N 9 183.963 265.184 242.163 1 96.03 ? CAS Y01 2109 A 1 
HETATM 17 C CBF Y01 . . . N 9 183.143 266.386 241.618 1 96.03 ? CBF Y01 2109 A 1 
HETATM 18 C CBD Y01 . . . N 9 183.668 266.74 240.231 1 96.03 ? CBD Y01 2109 A 1 
HETATM 19 C CAK Y01 . . . N 9 183.005 268.008 239.745 1 96.03 ? CAK Y01 2109 A 1 
HETATM 20 C CAI Y01 . . . N 9 181.619 268.074 239.971 1 96.03 ? CAI Y01 2109 A 1 
HETATM 21 C CAZ Y01 . . . N 9 180.9 267.247 240.813 1 96.03 ? CAZ Y01 2109 A 1 
HETATM 22 C CAV Y01 . . . N 9 179.457 267.552 240.843 1 96.03 ? CAV Y01 2109 A 1 
HETATM 23 C CBH Y01 . . . N 9 181.591 266.178 241.58 1 96.03 ? CBH Y01 2109 A 1 
HETATM 24 C CAD Y01 . . . N 9 181.201 264.827 240.988 1 96.03 ? CAD Y01 2109 A 1 
HETATM 25 C CAT Y01 . . . N 9 181.007 266.255 243.005 1 96.03 ? CAT Y01 2109 A 1 
HETATM 26 C CAR Y01 . . . N 9 179.47 266.276 243.055 1 96.03 ? CAR Y01 2109 A 1 
HETATM 27 C CBC Y01 . . . N 9 178.899 267.458 242.26 1 96.03 ? CBC Y01 2109 A 1 
HETATM 28 O OAW Y01 . . . N 9 177.5 267.375 242.026 1 96.03 ? OAW Y01 2109 A 1 
HETATM 29 C CAY Y01 . . . N 9 176.787 268.539 242.101 1 96.03 ? CAY Y01 2109 A 1 
HETATM 30 O OAG Y01 . . . N 9 177.401 269.492 241.573 1 96.03 ? OAG Y01 2109 A 1 
HETATM 31 C CAM Y01 . . . N 9 175.451 268.62 242.719 1 96.03 ? CAM Y01 2109 A 1 
HETATM 32 C CAL Y01 . . . N 9 175.375 269.6 243.875 1 96.03 ? CAL Y01 2109 A 1 
HETATM 33 C CAX Y01 . . . N 9 174.04 269.455 244.649 1 96.03 ? CAX Y01 2109 A 1 
HETATM 34 O OAH Y01 . . . N 9 173.865 270.221 245.626 1 96.03 ? OAH Y01 2109 A 1 
HETATM 35 O OAF Y01 . . . N 9 173.248 268.583 244.228 1 96.03 ? OAF Y01 2109 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    31 
_model_server_stats.query_time_ms           234 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           35 
#