data_7SX3 # _model_server_result.job_id PXU6VTOwdjEx9bhn38npVQ _model_server_result.datetime_utc '2024-11-21 14:28:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7sx3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":2110}' # _entry.id 7SX3 # _exptl.entry_id 7SX3 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7SX3 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7SX3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 9 N N N ? 9 O N N ? 9 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 207 A CYS 207 1_555 A SG CYS 239 A CYS 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 229 A CYS 229 1_555 A SG CYS 245 A CYS 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf3 A SG CYS 1046 A CYS 1046 1_555 A SG CYS 1057 A CYS 1057 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 A SG CYS 1405 A CYS 1405 1_555 A SG CYS 1417 A CYS 1417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf5 B SG CYS 191 B CYS 191 1_555 B SG CYS 261 B CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 B SG CYS 226 B CYS 226 1_555 B SG CYS 313 B CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 B SG CYS 304 B CYS 304 1_555 B SG CYS 341 B CYS 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf8 B SG CYS 324 B CYS 324 1_555 B SG CYS 377 B CYS 377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? disulf ? disulf9 B SG CYS 330 B CYS 330 1_555 B SG CYS 376 B CYS 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf10 B SG CYS 334 B CYS 334 1_555 B SG CYS 361 B CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.923 ? covale ? covale1 A C MET 286 A MET 286 1_555 A N TYS 287 A TYS 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C TYS 287 A TYS 287 1_555 A N ARG 288 A ARG 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 A ND2 ASN 1064 A ASN 1064 1_555 G C1 NAG . A NAG 2102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CBA Y01 sing 685 n n CBA CAB Y01 sing 686 n n CBA CAN Y01 sing 687 n n CAN CAJ Y01 sing 688 n n CAJ CAO Y01 sing 689 n n CAO CBB Y01 sing 690 n n CBB CAC Y01 sing 691 n n CBB CBE Y01 sing 692 n n CBE CAP Y01 sing 693 n n CBE CBI Y01 sing 694 n n CAP CAQ Y01 sing 695 n n CAQ CBG Y01 sing 696 n n CBG CBI Y01 sing 697 n n CBG CBD Y01 sing 698 n n CBI CAE Y01 sing 699 n n CBI CAU Y01 sing 700 n n CAU CAS Y01 sing 701 n n CAS CBF Y01 sing 702 n n CBF CBD Y01 sing 703 n n CBF CBH Y01 sing 704 n n CBD CAK Y01 sing 705 n n CAK CAI Y01 sing 706 n n CAI CAZ Y01 doub 707 n n CAZ CAV Y01 sing 708 n n CAZ CBH Y01 sing 709 n n CAV CBC Y01 sing 710 n n CBH CAD Y01 sing 711 n n CBH CAT Y01 sing 712 n n CAT CAR Y01 sing 713 n n CAR CBC Y01 sing 714 n n CBC OAW Y01 sing 715 n n OAW CAY Y01 sing 716 n n CAY OAG Y01 doub 717 n n CAY CAM Y01 sing 718 n n CAM CAL Y01 sing 719 n n CAL CAX Y01 sing 720 n n CAX OAH Y01 sing 721 n n CAX OAF Y01 doub 722 n n CAA HAA1 Y01 sing 723 n n CAA HAA2 Y01 sing 724 n n CAA HAA3 Y01 sing 725 n n CBA HBA Y01 sing 726 n n CAB HAB1 Y01 sing 727 n n CAB HAB2 Y01 sing 728 n n CAB HAB3 Y01 sing 729 n n CAN HAN1 Y01 sing 730 n n CAN HAN2 Y01 sing 731 n n CAJ HAJ1 Y01 sing 732 n n CAJ HAJ2 Y01 sing 733 n n CAO HAO1 Y01 sing 734 n n CAO HAO2 Y01 sing 735 n n CBB HBB Y01 sing 736 n n CAC HAC1 Y01 sing 737 n n CAC HAC2 Y01 sing 738 n n CAC HAC3 Y01 sing 739 n n CBE HBE Y01 sing 740 n n CAP HAP1 Y01 sing 741 n n CAP HAP2 Y01 sing 742 n n CAQ HAQ1 Y01 sing 743 n n CAQ HAQ2 Y01 sing 744 n n CBG HBG Y01 sing 745 n n CBD HBD Y01 sing 746 n n CAE HAE1 Y01 sing 747 n n CAE HAE2 Y01 sing 748 n n CAE HAE3 Y01 sing 749 n n CAU HAU1 Y01 sing 750 n n CAU HAU2 Y01 sing 751 n n CAS HAS1 Y01 sing 752 n n CAS HAS2 Y01 sing 753 n n CBF HBF Y01 sing 754 n n CAK HAK1 Y01 sing 755 n n CAK HAK2 Y01 sing 756 n n CAI HAI Y01 sing 757 n n CAV HAV1 Y01 sing 758 n n CAV HAV2 Y01 sing 759 n n CBC HBC Y01 sing 760 n n CAD HAD1 Y01 sing 761 n n CAD HAD2 Y01 sing 762 n n CAD HAD3 Y01 sing 763 n n CAT HAT1 Y01 sing 764 n n CAT HAT2 Y01 sing 765 n n CAR HAR1 Y01 sing 766 n n CAR HAR2 Y01 sing 767 n n CAM HAM1 Y01 sing 768 n n CAM HAM2 Y01 sing 769 n n CAL HAL1 Y01 sing 770 n n CAL HAL2 Y01 sing 771 n n OAH HAH Y01 sing 772 n n # _atom_sites.entry_id 7SX3 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 NAG A 1 2101 1801 NAG NAG . G 6 NAG A 1 2102 1802 NAG NAG . H 7 PEV A 1 2103 1803 PEV PEV . I 7 PEV A 1 2104 1804 PEV PEV . J 7 PEV A 1 2105 1805 PEV PEV . K 7 PEV A 1 2106 1807 PEV PEV . L 8 PGV A 1 2107 1808 PGV PGV . M 8 PGV A 1 2108 1809 PGV PGV . N 9 Y01 A 1 2109 1901 Y01 Y01 . O 9 Y01 A 1 2110 2001 Y01 Y01 . P 9 Y01 A 1 2111 2101 Y01 Y01 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . O 9 200.464 245.997 265.504 1 89.47 ? CAA Y01 2110 A 1 HETATM 2 C CBA Y01 . . . O 9 199.408 246.852 264.823 1 89.47 ? CBA Y01 2110 A 1 HETATM 3 C CAB Y01 . . . O 9 199.641 248.334 265.133 1 89.47 ? CAB Y01 2110 A 1 HETATM 4 C CAN Y01 . . . O 9 197.955 246.409 265.142 1 89.47 ? CAN Y01 2110 A 1 HETATM 5 C CAJ Y01 . . . O 9 196.971 247.461 265.685 1 89.47 ? CAJ Y01 2110 A 1 HETATM 6 C CAO Y01 . . . O 9 195.523 247.004 265.527 1 89.47 ? CAO Y01 2110 A 1 HETATM 7 C CBB Y01 . . . O 9 194.622 247.533 266.662 1 89.47 ? CBB Y01 2110 A 1 HETATM 8 C CAC Y01 . . . O 9 194.35 249.012 266.444 1 89.47 ? CAC Y01 2110 A 1 HETATM 9 C CBE Y01 . . . O 9 193.34 246.673 266.688 1 89.47 ? CBE Y01 2110 A 1 HETATM 10 C CAP Y01 . . . O 9 193.7 245.236 267.185 1 89.47 ? CAP Y01 2110 A 1 HETATM 11 C CAQ Y01 . . . O 9 192.494 244.732 268.006 1 89.47 ? CAQ Y01 2110 A 1 HETATM 12 C CBG Y01 . . . O 9 191.409 245.702 267.573 1 89.47 ? CBG Y01 2110 A 1 HETATM 13 C CBI Y01 . . . O 9 192.149 247.036 267.609 1 89.47 ? CBI Y01 2110 A 1 HETATM 14 C CAE Y01 . . . O 9 192.589 247.438 269.02 1 89.47 ? CAE Y01 2110 A 1 HETATM 15 C CAU Y01 . . . O 9 191.195 248.072 267.019 1 89.47 ? CAU Y01 2110 A 1 HETATM 16 C CAS Y01 . . . O 9 189.811 248.089 267.689 1 89.47 ? CAS Y01 2110 A 1 HETATM 17 C CBF Y01 . . . O 9 189.115 246.709 267.785 1 89.47 ? CBF Y01 2110 A 1 HETATM 18 C CBD Y01 . . . O 9 190.099 245.698 268.361 1 89.47 ? CBD Y01 2110 A 1 HETATM 19 C CAK Y01 . . . O 9 189.493 244.314 268.285 1 89.47 ? CAK Y01 2110 A 1 HETATM 20 C CAI Y01 . . . O 9 188.128 244.236 268.617 1 89.47 ? CAI Y01 2110 A 1 HETATM 21 C CAZ Y01 . . . O 9 187.27 245.309 268.766 1 89.47 ? CAZ Y01 2110 A 1 HETATM 22 C CAV Y01 . . . O 9 185.889 244.919 269.109 1 89.47 ? CAV Y01 2110 A 1 HETATM 23 C CBH Y01 . . . O 9 187.781 246.691 268.594 1 89.47 ? CBH Y01 2110 A 1 HETATM 24 C CAD Y01 . . . O 9 187.92 247.328 269.973 1 89.47 ? CAD Y01 2110 A 1 HETATM 25 C CAT Y01 . . . O 9 186.687 247.46 267.825 1 89.47 ? CAT Y01 2110 A 1 HETATM 26 C CAR Y01 . . . O 9 185.269 247.272 268.382 1 89.47 ? CAR Y01 2110 A 1 HETATM 27 C CBC Y01 . . . O 9 184.879 245.795 268.379 1 89.47 ? CBC Y01 2110 A 1 HETATM 28 O OAW Y01 . . . O 9 183.678 245.51 269.076 1 89.47 ? OAW Y01 2110 A 1 HETATM 29 C CAY Y01 . . . O 9 182.571 245.254 268.324 1 89.47 ? CAY Y01 2110 A 1 HETATM 30 O OAG Y01 . . . O 9 182.451 246.072 267.385 1 89.47 ? OAG Y01 2110 A 1 HETATM 31 C CAM Y01 . . . O 9 181.664 244.129 268.613 1 89.47 ? CAM Y01 2110 A 1 HETATM 32 C CAL Y01 . . . O 9 180.336 244.554 269.21 1 89.47 ? CAL Y01 2110 A 1 HETATM 33 C CAX Y01 . . . O 9 179.494 243.326 269.633 1 89.47 ? CAX Y01 2110 A 1 HETATM 34 O OAH Y01 . . . O 9 179.06 242.592 268.715 1 89.47 ? OAH Y01 2110 A 1 HETATM 35 O OAF Y01 . . . O 9 179.321 243.173 270.863 1 89.47 ? OAF Y01 2110 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 35 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 35 #