data_7SX4
#
_model_server_result.job_id            Yam-wGWDNLOqTXJfhk0nUw 
_model_server_result.datetime_utc      '2024-12-26 20:34:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7sx4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":2103}' 
#
_entry.id    7SX4 
#
_exptl.entry_id    7SX4 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              720.012 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7SX4 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7SX4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      7 
_struct_asym.id                             H 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 207 A CYS 207 1_555 A SG CYS 239 A CYS 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf2 A SG CYS 229 A CYS 229 1_555 A SG CYS 245 A CYS 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf3 A SG CYS 1046 A CYS 1046 1_555 A SG CYS 1057 A CYS 1057 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf4 A SG CYS 1405 A CYS 1405 1_555 A SG CYS 1417 A CYS 1417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf5 B SG CYS 191 B CYS 191 1_555 B SG CYS 261 B CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf6 B SG CYS 226 B CYS 226 1_555 B SG CYS 313 B CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf7 B SG CYS 304 B CYS 304 1_555 B SG CYS 341 B CYS 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf8 B SG CYS 324 B CYS 324 1_555 B SG CYS 377 B CYS 377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf9 B SG CYS 330 B CYS 330 1_555 B SG CYS 376 B CYS 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf10 B SG CYS 334 B CYS 334 1_555 B SG CYS 361 B CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
covale ? covale1 A C MET 286 A MET 286 1_555 A N TYS 287 A TYS 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale2 A C TYS 287 A TYS 287 1_555 A N ARG 288 A ARG 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale3 A ND2 ASN 1064 A ASN 1064 1_555 G C1 NAG . A NAG 2102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
#
_chem_comp.formula           'C39 H78 N O8 P' 
_chem_comp.formula_weight    720.012 
_chem_comp.id                PEV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     PHOSPHATIDYLETHANOLAMINE;1-PALMITOYL-2-OLEOYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C48 C47 PEV sing 265 n n 
C48 H481 PEV sing 266 n n 
C48 H482 PEV sing 267 n n 
C48 H483 PEV sing 268 n n 
C47 C46 PEV sing 269 n n 
C47 H471 PEV sing 270 n n 
C47 H472 PEV sing 271 n n 
C46 C45 PEV sing 272 n n 
C46 H461 PEV sing 273 n n 
C46 H462 PEV sing 274 n n 
C45 C44 PEV sing 275 n n 
C45 H451 PEV sing 276 n n 
C45 H452 PEV sing 277 n n 
C44 C43 PEV sing 278 n n 
C44 H441 PEV sing 279 n n 
C44 H442 PEV sing 280 n n 
C43 C42 PEV sing 281 n n 
C43 H431 PEV sing 282 n n 
C43 H432 PEV sing 283 n n 
C42 C41 PEV sing 284 n n 
C42 H421 PEV sing 285 n n 
C42 H422 PEV sing 286 n n 
C41 C40 PEV sing 287 n n 
C41 H411 PEV sing 288 n n 
C41 H412 PEV sing 289 n n 
C40 C39 PEV sing 290 n n 
C40 H401 PEV sing 291 n n 
C40 H402 PEV sing 292 n n 
C39 C38 PEV sing 293 n n 
C39 H391 PEV sing 294 n n 
C39 H392 PEV sing 295 n n 
C38 C37 PEV sing 296 n n 
C38 H381 PEV sing 297 n n 
C38 H382 PEV sing 298 n n 
C37 C36 PEV sing 299 n n 
C37 H371 PEV sing 300 n n 
C37 H372 PEV sing 301 n n 
C36 C35 PEV sing 302 n n 
C36 H361 PEV sing 303 n n 
C36 H362 PEV sing 304 n n 
C35 C34 PEV sing 305 n n 
C35 H351 PEV sing 306 n n 
C35 H352 PEV sing 307 n n 
C34 C33 PEV sing 308 n n 
C34 H341 PEV sing 309 n n 
C34 H342 PEV sing 310 n n 
C33 C32 PEV sing 311 n n 
C33 H331 PEV sing 312 n n 
C33 H332 PEV sing 313 n n 
C32 C31 PEV sing 314 n n 
C32 H321 PEV sing 315 n n 
C32 H322 PEV sing 316 n n 
C31 O31 PEV doub 317 n n 
C31 O2 PEV sing 318 n n 
O2 C2 PEV sing 319 n n 
C2 C1 PEV sing 320 n n 
C2 C3 PEV sing 321 n n 
C2 H2 PEV sing 322 n n 
C1 O3P PEV sing 323 n n 
C1 H11 PEV sing 324 n n 
C1 H12 PEV sing 325 n n 
O3P P PEV sing 326 n n 
P O1P PEV doub 327 n n 
P O2P PEV sing 328 n n 
P O4P PEV sing 329 n n 
O2P HO2P PEV sing 330 n n 
O4P C4 PEV sing 331 n n 
C4 C5 PEV sing 332 n n 
C4 H41 PEV sing 333 n n 
C4 H42 PEV sing 334 n n 
C5 N6 PEV sing 335 n n 
C5 H51 PEV sing 336 n n 
C5 H52 PEV sing 337 n n 
N6 HN61 PEV sing 338 n n 
N6 HN62 PEV sing 339 n n 
C3 O3 PEV sing 340 n n 
C3 H31 PEV sing 341 n n 
C3 H32 PEV sing 342 n n 
O3 C11 PEV sing 343 n n 
C11 O11 PEV doub 344 n n 
C11 C12 PEV sing 345 n n 
C12 C13 PEV sing 346 n n 
C12 H121 PEV sing 347 n n 
C12 H122 PEV sing 348 n n 
C13 C14 PEV sing 349 n n 
C13 H131 PEV sing 350 n n 
C13 H132 PEV sing 351 n n 
C14 C15 PEV sing 352 n n 
C14 H141 PEV sing 353 n n 
C14 H142 PEV sing 354 n n 
C15 C16 PEV sing 355 n n 
C15 H151 PEV sing 356 n n 
C15 H152 PEV sing 357 n n 
C16 C17 PEV sing 358 n n 
C16 H161 PEV sing 359 n n 
C16 H162 PEV sing 360 n n 
C17 C18 PEV sing 361 n n 
C17 H171 PEV sing 362 n n 
C17 H172 PEV sing 363 n n 
C18 C19 PEV sing 364 n n 
C18 H181 PEV sing 365 n n 
C18 H182 PEV sing 366 n n 
C19 C20 PEV sing 367 n n 
C19 H191 PEV sing 368 n n 
C19 H192 PEV sing 369 n n 
C20 C21 PEV sing 370 n n 
C20 H201 PEV sing 371 n n 
C20 H202 PEV sing 372 n n 
C21 C22 PEV sing 373 n n 
C21 H211 PEV sing 374 n n 
C21 H212 PEV sing 375 n n 
C22 C23 PEV sing 376 n n 
C22 H221 PEV sing 377 n n 
C22 H222 PEV sing 378 n n 
C23 C24 PEV sing 379 n n 
C23 H231 PEV sing 380 n n 
C23 H232 PEV sing 381 n n 
C24 C25 PEV sing 382 n n 
C24 H241 PEV sing 383 n n 
C24 H242 PEV sing 384 n n 
C25 C26 PEV sing 385 n n 
C25 H251 PEV sing 386 n n 
C25 H252 PEV sing 387 n n 
C26 H261 PEV sing 388 n n 
C26 H262 PEV sing 389 n n 
C26 H263 PEV sing 390 n n 
#
_atom_sites.entry_id                     7SX4 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 6 NAG A 1 2101 1801 NAG NAG . 
G 6 NAG A 1 2102 1802 NAG NAG . 
H 7 PEV A 1 2103 1803 PEV PEV . 
I 8 PGV A 1 2104 1809 PGV PGV . 
J 9 Y01 A 1 2105 1901 Y01 Y01 . 
K 9 Y01 A 1 2106 2001 Y01 Y01 . 
L 9 Y01 A 1 2107 2101 Y01 Y01 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C38 PEV . . . H 7 202.165 223.325 224.745 1 108.98 ? C38 PEV 2103 A 1 
HETATM 2 C C37 PEV . . . H 7 202.874 223.91 223.502 1 108.98 ? C37 PEV 2103 A 1 
HETATM 3 C C36 PEV . . . H 7 204.14 223.063 223.182 1 108.98 ? C36 PEV 2103 A 1 
HETATM 4 C C35 PEV . . . H 7 205.242 223.979 222.599 1 108.98 ? C35 PEV 2103 A 1 
HETATM 5 C C34 PEV . . . H 7 206.476 223.123 222.223 1 108.98 ? C34 PEV 2103 A 1 
HETATM 6 C C33 PEV . . . H 7 207.764 223.835 222.698 1 108.98 ? C33 PEV 2103 A 1 
HETATM 7 C C32 PEV . . . H 7 208.094 225.008 221.758 1 108.98 ? C32 PEV 2103 A 1 
HETATM 8 C C31 PEV . . . H 7 208.624 224.468 220.408 1 108.98 ? C31 PEV 2103 A 1 
HETATM 9 O O31 PEV . . . H 7 209.55 223.722 220.404 1 108.98 ? O31 PEV 2103 A 1 
HETATM 10 O O2 PEV . . . H 7 208 224.863 219.192 1 108.98 ? O2 PEV 2103 A 1 
HETATM 11 C C2 PEV . . . H 7 208.661 224.483 218.014 1 108.98 ? C2 PEV 2103 A 1 
HETATM 12 C C1 PEV . . . H 7 209.587 225.617 217.57 1 108.98 ? C1 PEV 2103 A 1 
HETATM 13 O O3P PEV . . . H 7 210.727 225.083 216.953 1 108.98 ? O3P PEV 2103 A 1 
HETATM 14 P P PEV . . . H 7 211.513 226.002 215.822 1 108.98 ? P PEV 2103 A 1 
HETATM 15 O O1P PEV . . . H 7 211.313 227.466 216.143 1 108.98 ? O1P PEV 2103 A 1 
HETATM 16 O O2P PEV . . . H 7 212.989 225.676 215.837 1 108.98 ? O2P PEV 2103 A 1 
HETATM 17 O O4P PEV . . . H 7 210.888 225.685 214.331 1 108.98 ? O4P PEV 2103 A 1 
HETATM 18 C C4 PEV . . . H 7 211.501 224.711 213.528 1 108.98 ? C4 PEV 2103 A 1 
HETATM 19 C C5 PEV . . . H 7 211.644 223.397 214.294 1 108.98 ? C5 PEV 2103 A 1 
HETATM 20 N N6 PEV . . . H 7 213.023 223.214 214.692 1 108.98 ? N6 PEV 2103 A 1 
HETATM 21 C C3 PEV . . . H 7 207.635 224.209 216.918 1 108.98 ? C3 PEV 2103 A 1 
HETATM 22 O O3 PEV . . . H 7 206.711 225.277 216.842 1 108.98 ? O3 PEV 2103 A 1 
HETATM 23 C C11 PEV . . . H 7 205.357 224.866 216.954 1 108.98 ? C11 PEV 2103 A 1 
HETATM 24 O O11 PEV . . . H 7 204.884 224.149 216.131 1 108.98 ? O11 PEV 2103 A 1 
HETATM 25 C C12 PEV . . . H 7 204.5 225.34 218.154 1 108.98 ? C12 PEV 2103 A 1 
HETATM 26 C C13 PEV . . . H 7 203.017 224.961 217.914 1 108.98 ? C13 PEV 2103 A 1 
HETATM 27 C C14 PEV . . . H 7 202.241 225.063 219.248 1 108.98 ? C14 PEV 2103 A 1 
HETATM 28 C C15 PEV . . . H 7 200.857 225.694 218.989 1 108.98 ? C15 PEV 2103 A 1 
HETATM 29 C C16 PEV . . . H 7 200.085 225.798 220.324 1 108.98 ? C16 PEV 2103 A 1 
HETATM 30 C C17 PEV . . . H 7 200.802 226.809 221.246 1 108.98 ? C17 PEV 2103 A 1 
HETATM 31 C C18 PEV . . . H 7 199.781 227.422 222.233 1 108.98 ? C18 PEV 2103 A 1 
HETATM 32 C C19 PEV . . . H 7 200.242 228.848 222.624 1 108.98 ? C19 PEV 2103 A 1 
HETATM 33 C C20 PEV . . . H 7 201.309 228.757 223.736 1 108.98 ? C20 PEV 2103 A 1 
HETATM 34 C C21 PEV . . . H 7 200.778 227.876 224.887 1 108.98 ? C21 PEV 2103 A 1 
HETATM 35 C C22 PEV . . . H 7 200.924 228.639 226.231 1 108.98 ? C22 PEV 2103 A 1 
#
_model_server_stats.io_time_ms              67 
_model_server_stats.parse_time_ms           27 
_model_server_stats.create_model_time_ms    34 
_model_server_stats.query_time_ms           298 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           35 
#