data_7SX4 # _model_server_result.job_id b4191MtJRTLrWB6Gw-LJHw _model_server_result.datetime_utc '2024-12-26 21:33:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7sx4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":2105}' # _entry.id 7SX4 # _exptl.entry_id 7SX4 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7SX4 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7SX4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 9 J N N ? 9 K N N ? 9 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 207 A CYS 207 1_555 A SG CYS 239 A CYS 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf2 A SG CYS 229 A CYS 229 1_555 A SG CYS 245 A CYS 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 A SG CYS 1046 A CYS 1046 1_555 A SG CYS 1057 A CYS 1057 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 1405 A CYS 1405 1_555 A SG CYS 1417 A CYS 1417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf5 B SG CYS 191 B CYS 191 1_555 B SG CYS 261 B CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 B SG CYS 226 B CYS 226 1_555 B SG CYS 313 B CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf7 B SG CYS 304 B CYS 304 1_555 B SG CYS 341 B CYS 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf8 B SG CYS 324 B CYS 324 1_555 B SG CYS 377 B CYS 377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf9 B SG CYS 330 B CYS 330 1_555 B SG CYS 376 B CYS 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf10 B SG CYS 334 B CYS 334 1_555 B SG CYS 361 B CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A C MET 286 A MET 286 1_555 A N TYS 287 A TYS 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C TYS 287 A TYS 287 1_555 A N ARG 288 A ARG 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 A ND2 ASN 1064 A ASN 1064 1_555 G C1 NAG . A NAG 2102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CBA Y01 sing 685 n n CBA CAB Y01 sing 686 n n CBA CAN Y01 sing 687 n n CAN CAJ Y01 sing 688 n n CAJ CAO Y01 sing 689 n n CAO CBB Y01 sing 690 n n CBB CAC Y01 sing 691 n n CBB CBE Y01 sing 692 n n CBE CAP Y01 sing 693 n n CBE CBI Y01 sing 694 n n CAP CAQ Y01 sing 695 n n CAQ CBG Y01 sing 696 n n CBG CBI Y01 sing 697 n n CBG CBD Y01 sing 698 n n CBI CAE Y01 sing 699 n n CBI CAU Y01 sing 700 n n CAU CAS Y01 sing 701 n n CAS CBF Y01 sing 702 n n CBF CBD Y01 sing 703 n n CBF CBH Y01 sing 704 n n CBD CAK Y01 sing 705 n n CAK CAI Y01 sing 706 n n CAI CAZ Y01 doub 707 n n CAZ CAV Y01 sing 708 n n CAZ CBH Y01 sing 709 n n CAV CBC Y01 sing 710 n n CBH CAD Y01 sing 711 n n CBH CAT Y01 sing 712 n n CAT CAR Y01 sing 713 n n CAR CBC Y01 sing 714 n n CBC OAW Y01 sing 715 n n OAW CAY Y01 sing 716 n n CAY OAG Y01 doub 717 n n CAY CAM Y01 sing 718 n n CAM CAL Y01 sing 719 n n CAL CAX Y01 sing 720 n n CAX OAH Y01 sing 721 n n CAX OAF Y01 doub 722 n n CAA HAA1 Y01 sing 723 n n CAA HAA2 Y01 sing 724 n n CAA HAA3 Y01 sing 725 n n CBA HBA Y01 sing 726 n n CAB HAB1 Y01 sing 727 n n CAB HAB2 Y01 sing 728 n n CAB HAB3 Y01 sing 729 n n CAN HAN1 Y01 sing 730 n n CAN HAN2 Y01 sing 731 n n CAJ HAJ1 Y01 sing 732 n n CAJ HAJ2 Y01 sing 733 n n CAO HAO1 Y01 sing 734 n n CAO HAO2 Y01 sing 735 n n CBB HBB Y01 sing 736 n n CAC HAC1 Y01 sing 737 n n CAC HAC2 Y01 sing 738 n n CAC HAC3 Y01 sing 739 n n CBE HBE Y01 sing 740 n n CAP HAP1 Y01 sing 741 n n CAP HAP2 Y01 sing 742 n n CAQ HAQ1 Y01 sing 743 n n CAQ HAQ2 Y01 sing 744 n n CBG HBG Y01 sing 745 n n CBD HBD Y01 sing 746 n n CAE HAE1 Y01 sing 747 n n CAE HAE2 Y01 sing 748 n n CAE HAE3 Y01 sing 749 n n CAU HAU1 Y01 sing 750 n n CAU HAU2 Y01 sing 751 n n CAS HAS1 Y01 sing 752 n n CAS HAS2 Y01 sing 753 n n CBF HBF Y01 sing 754 n n CAK HAK1 Y01 sing 755 n n CAK HAK2 Y01 sing 756 n n CAI HAI Y01 sing 757 n n CAV HAV1 Y01 sing 758 n n CAV HAV2 Y01 sing 759 n n CBC HBC Y01 sing 760 n n CAD HAD1 Y01 sing 761 n n CAD HAD2 Y01 sing 762 n n CAD HAD3 Y01 sing 763 n n CAT HAT1 Y01 sing 764 n n CAT HAT2 Y01 sing 765 n n CAR HAR1 Y01 sing 766 n n CAR HAR2 Y01 sing 767 n n CAM HAM1 Y01 sing 768 n n CAM HAM2 Y01 sing 769 n n CAL HAL1 Y01 sing 770 n n CAL HAL2 Y01 sing 771 n n OAH HAH Y01 sing 772 n n # _atom_sites.entry_id 7SX4 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 NAG A 1 2101 1801 NAG NAG . G 6 NAG A 1 2102 1802 NAG NAG . H 7 PEV A 1 2103 1803 PEV PEV . I 8 PGV A 1 2104 1809 PGV PGV . J 9 Y01 A 1 2105 1901 Y01 Y01 . K 9 Y01 A 1 2106 2001 Y01 Y01 . L 9 Y01 A 1 2107 2101 Y01 Y01 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . J 9 193.422 262.405 238.634 1 122.15 ? CAA Y01 2105 A 1 HETATM 2 C CBA Y01 . . . J 9 193.569 262.879 237.197 1 122.15 ? CBA Y01 2105 A 1 HETATM 3 C CAB Y01 . . . J 9 193.942 261.717 236.279 1 122.15 ? CAB Y01 2105 A 1 HETATM 4 C CAN Y01 . . . J 9 192.351 263.649 236.629 1 122.15 ? CAN Y01 2105 A 1 HETATM 5 C CAJ Y01 . . . J 9 190.939 263.257 237.113 1 122.15 ? CAJ Y01 2105 A 1 HETATM 6 C CAO Y01 . . . J 9 189.993 264.457 237.093 1 122.15 ? CAO Y01 2105 A 1 HETATM 7 C CBB Y01 . . . J 9 189.855 265.133 238.49 1 122.15 ? CBB Y01 2105 A 1 HETATM 8 C CAC Y01 . . . J 9 191.117 265.932 238.779 1 122.15 ? CAC Y01 2105 A 1 HETATM 9 C CBE Y01 . . . J 9 188.547 266.006 238.57 1 122.15 ? CBE Y01 2105 A 1 HETATM 10 C CAP Y01 . . . J 9 188.374 266.902 237.274 1 122.15 ? CAP Y01 2105 A 1 HETATM 11 C CAQ Y01 . . . J 9 186.884 266.84 236.899 1 122.15 ? CAQ Y01 2105 A 1 HETATM 12 C CBG Y01 . . . J 9 186.264 266.523 238.249 1 122.15 ? CBG Y01 2105 A 1 HETATM 13 C CBI Y01 . . . J 9 187.124 265.37 238.762 1 122.15 ? CBI Y01 2105 A 1 HETATM 14 C CAE Y01 . . . J 9 186.888 264.064 237.992 1 122.15 ? CAE Y01 2105 A 1 HETATM 15 C CAU Y01 . . . J 9 186.719 265.191 240.226 1 122.15 ? CAU Y01 2105 A 1 HETATM 16 C CAS Y01 . . . J 9 185.198 265.005 240.433 1 122.15 ? CAS Y01 2105 A 1 HETATM 17 C CBF Y01 . . . J 9 184.306 266.069 239.736 1 122.15 ? CBF Y01 2105 A 1 HETATM 18 C CBD Y01 . . . J 9 184.772 266.222 238.292 1 122.15 ? CBD Y01 2105 A 1 HETATM 19 C CAK Y01 . . . J 9 184.028 267.363 237.64 1 122.15 ? CAK Y01 2105 A 1 HETATM 20 C CAI Y01 . . . J 9 182.649 267.406 237.908 1 122.15 ? CAI Y01 2105 A 1 HETATM 21 C CAZ Y01 . . . J 9 182.001 266.695 238.9 1 122.15 ? CAZ Y01 2105 A 1 HETATM 22 C CAV Y01 . . . J 9 180.546 266.936 238.951 1 122.15 ? CAV Y01 2105 A 1 HETATM 23 C CBH Y01 . . . J 9 182.772 265.79 239.792 1 122.15 ? CBH Y01 2105 A 1 HETATM 24 C CAD Y01 . . . J 9 182.43 264.346 239.43 1 122.15 ? CAD Y01 2105 A 1 HETATM 25 C CAT Y01 . . . J 9 182.244 266.065 241.212 1 122.15 ? CAT Y01 2105 A 1 HETATM 26 C CAR Y01 . . . J 9 180.717 266.019 241.329 1 122.15 ? CAR Y01 2105 A 1 HETATM 27 C CBC Y01 . . . J 9 180.056 267.039 240.391 1 122.15 ? CBC Y01 2105 A 1 HETATM 28 O OAW Y01 . . . J 9 178.655 266.862 240.242 1 122.15 ? OAW Y01 2105 A 1 HETATM 29 C CAY Y01 . . . J 9 177.886 267.99 240.233 1 122.15 ? CAY Y01 2105 A 1 HETATM 30 O OAG Y01 . . . J 9 178.458 268.938 239.652 1 122.15 ? OAG Y01 2105 A 1 HETATM 31 C CAM Y01 . . . J 9 176.543 268.037 240.838 1 122.15 ? CAM Y01 2105 A 1 HETATM 32 C CAL Y01 . . . J 9 176.406 269.079 241.934 1 122.15 ? CAL Y01 2105 A 1 HETATM 33 C CAX Y01 . . . J 9 175.062 268.925 242.691 1 122.15 ? CAX Y01 2105 A 1 HETATM 34 O OAH Y01 . . . J 9 174.88 269.671 243.682 1 122.15 ? OAH Y01 2105 A 1 HETATM 35 O OAF Y01 . . . J 9 174.271 268.065 242.243 1 122.15 ? OAF Y01 2105 A 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 86 _model_server_stats.query_time_ms 793 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 35 #