data_7SYZ # _model_server_result.job_id NOFOQPYouajgl3PLaAVOfw _model_server_result.datetime_utc '2024-12-01 09:57:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7syz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":302}' # _entry.id 7SYZ # _exptl.entry_id 7SYZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 15 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7SYZ _cell.length_a 165.757 _cell.length_b 165.757 _cell.length_c 202.066 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7SYZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 9 I N N ? 9 J N N ? 9 K N N ? 9 L N N ? 9 M N N ? 9 N N N ? 9 O N N ? 9 P N N ? 9 Q N N ? 9 R N N ? 9 S N N ? 9 T N N ? 9 U N N ? 9 V N N ? 9 W N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 4 oligosaccharide 5 oligosaccharide 6 oligosaccharide 7 oligosaccharide 8 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 4 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 4 4 3 MAN BMA C1 O1 . O6 HO6 . sing 4 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 5 ? 5 3 2 BMA NAG C1 O1 . O4 HO4 . sing 6 ? 6 2 1 NAG NAG C1 O1 . O4 HO4 . sing 7 ? 6 3 2 BMA NAG C1 O1 . O4 HO4 . sing 8 ? 6 4 1 FUC NAG C1 O1 . O3 HO3 . sing 9 ? 6 5 1 FUC NAG C1 O1 . O6 HO6 . sing 10 ? 7 2 1 NAG NAG C1 O1 . O4 HO4 . sing 11 ? 7 3 2 BMA NAG C1 O1 . O4 HO4 . sing 12 ? 7 4 3 MAN BMA C1 O1 . O6 HO6 . sing 13 ? 7 5 1 FUC NAG C1 O1 . O3 HO3 . sing 14 ? 7 6 1 FUC NAG C1 O1 . O6 HO6 . sing 15 ? 8 2 1 NAG NAG C1 O1 . O4 HO4 . sing 16 ? 8 3 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D NAG 1 B 1 NAG A 610 NAG 4 n D NAG 2 B 2 NAG A 611 NAG 4 n D BMA 3 B 3 BMA A 612 BMA 4 n D MAN 4 B 4 MAN A 613 MAN 5 n E NAG 1 C 1 NAG A 614 NAG 5 n E NAG 2 C 2 NAG A 615 NAG 5 n E BMA 3 C 3 BMA A 616 BMA 6 n F NAG 1 D 1 NAG A 623 NAG 6 n F NAG 2 D 2 NAG A 626 NAG 6 n F BMA 3 D 3 BMA A 627 BMA 6 n F FUC 4 D 4 FUC A 625 FUC 6 n F FUC 5 D 5 FUC A 624 FUC 7 n G NAG 1 E 1 NAG A 628 NAG 7 n G NAG 2 E 2 NAG A 629 NAG 7 n G BMA 3 E 3 BMA A 630 BMA 7 n G MAN 4 E 4 MAN A 636 MAN 7 n G FUC 5 E 5 FUC A 631 FUC 7 n G FUC 6 E 6 FUC A 632 FUC 8 n H NAG 1 F 1 NAG A 633 NAG 8 n H NAG 2 F 2 NAG A 634 NAG 8 n H FUC 3 F 3 FUC A 635 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 189 A CYS 189 1_555 A SG CYS 601 A CYS 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? disulf ? disulf2 A SG CYS 216 A CYS 216 1_555 A SG CYS 240 A CYS 240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? disulf ? disulf3 A SG CYS 282 A CYS 282 1_555 A SG CYS 295 A CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf4 A SG CYS 382 A CYS 382 1_555 A SG CYS 395 A CYS 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf5 A SG CYS 387 A CYS 387 1_555 A SG CYS 499 A CYS 499 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? disulf ? disulf6 A SG CYS 493 A CYS 493 1_555 A SG CYS 503 A CYS 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf7 A SG CYS 565 A CYS 565 1_555 A SG CYS 574 A CYS 574 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf8 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? disulf ? disulf9 B SG CYS 148 H CYS 140 1_555 B SG CYS 203 H CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf10 B SG CYS 223 H CYS 215 1_555 C SG CYS 219 L CYS 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf11 C SG CYS 23 L CYS 23 1_555 C SG CYS 93 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? disulf ? disulf12 C SG CYS 139 L CYS 134 1_555 C SG CYS 199 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? covale ? covale1 A ND2 ASN 306 A ASN 306 1_555 H C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale2 A ND2 ASN 378 A ASN 378 1_555 F C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.424 ? covale ? covale3 A ND2 ASN 417 A ASN 417 1_555 E C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale4 A ND2 ASN 481 A ASN 481 1_555 D C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.417 ? covale ? covale5 A ND2 ASN 529 A ASN 529 1_555 G C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale6 D O4 NAG . B NAG 1 1_555 D C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale7 D O4 NAG . B NAG 2 1_555 D C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.472 ? covale ? covale8 D O6 BMA . B BMA 3 1_555 D C1 MAN . B MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale9 E O4 NAG . C NAG 1 1_555 E C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale10 E O4 NAG . C NAG 2 1_555 E C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.504 ? covale ? covale11 F O4 NAG . D NAG 1 1_555 F C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.41 ? covale ? covale12 F O3 NAG . D NAG 1 1_555 F C1 FUC . D FUC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale13 F O6 NAG . D NAG 1 1_555 F C1 FUC . D FUC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale14 F O4 NAG . D NAG 2 1_555 F C1 BMA . D BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.482 ? covale ? covale15 G O4 NAG . E NAG 1 1_555 G C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale16 G O3 NAG . E NAG 1 1_555 G C1 FUC . E FUC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale17 G O6 NAG . E NAG 1 1_555 G C1 FUC . E FUC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale18 G O4 NAG . E NAG 2 1_555 G C1 BMA . E BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.48 ? covale ? covale19 G O6 BMA . E BMA 3 1_555 G C1 MAN . E MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale20 H O4 NAG . F NAG 1 1_555 H C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale21 H O6 NAG . F NAG 1 1_555 H C1 FUC . F FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.493 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 391 n n S O2 SO4 doub 392 n n S O3 SO4 sing 393 n n S O4 SO4 sing 394 n n # _atom_sites.entry_id 7SYZ _atom_sites.fract_transf_matrix[1][1] 0.006033 _atom_sites.fract_transf_matrix[1][2] 0.003483 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006966 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004949 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 9 SO4 A 1 701 1 SO4 SO4 . J 9 SO4 A 1 702 5 SO4 SO4 . K 9 SO4 A 1 703 6 SO4 SO4 . L 9 SO4 A 1 704 7 SO4 SO4 . M 9 SO4 A 1 705 11 SO4 SO4 . N 9 SO4 A 1 706 12 SO4 SO4 . O 9 SO4 A 1 707 15 SO4 SO4 . P 9 SO4 A 1 708 16 SO4 SO4 . Q 9 SO4 H 1 301 2 SO4 SO4 . R 9 SO4 H 1 302 8 SO4 SO4 . S 9 SO4 H 1 303 9 SO4 SO4 . T 9 SO4 H 1 304 10 SO4 SO4 . U 9 SO4 H 1 305 13 SO4 SO4 . V 9 SO4 H 1 306 14 SO4 SO4 . W 9 SO4 L 1 301 3 SO4 SO4 . X 10 HOH A 1 801 5 HOH HOH . X 10 HOH A 2 802 6 HOH HOH . Y 10 HOH H 1 401 4 HOH HOH . Y 10 HOH H 2 402 3 HOH HOH . Z 10 HOH L 1 401 1 HOH HOH . Z 10 HOH L 2 402 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . R 9 -1.128 53.131 17.154 1 71.63 ? S SO4 302 H 1 HETATM 2 O O1 SO4 . . . R 9 0.294 53.385 17.006 1 71.38 ? O1 SO4 302 H 1 HETATM 3 O O2 SO4 . . . R 9 -1.545 52.88 15.799 1 79.95 ? O2 SO4 302 H 1 HETATM 4 O O3 SO4 . . . R 9 -1.401 51.866 17.746 1 65.91 -1 O3 SO4 302 H 1 HETATM 5 O O4 SO4 . . . R 9 -1.877 54.217 17.815 1 63.95 ? O4 SO4 302 H 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 5 #