data_7SZ9 # _model_server_result.job_id lH43sJHCPOiO7EprJZMXOQ _model_server_result.datetime_utc '2025-03-06 01:10:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7sz9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 7SZ9 # _exptl.entry_id 7SZ9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.28 _cell.angle_gamma 90 _cell.entry_id 7SZ9 _cell.length_a 59.45 _cell.length_b 103.58 _cell.length_c 79.28 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7SZ9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 164 A CYS 163 1_555 H C3 DJ5 . D DJ5 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.851 ? covale ? covale2 B SG CYS 164 B CYS 163 1_555 G C3 DJ5 . C DJ5 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.849 ? covale ? covale3 C OG SER 36 C SER 36 1_555 G P24 DJ5 . C DJ5 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.61 ? covale ? covale4 D OG SER 36 D SER 36 1_555 H P24 DJ5 . D DJ5 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.607 ? metalc ? metalc1 A O ASN 297 A ASN 296 1_555 E NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? metalc ? metalc2 A OD1 ASN 297 A ASN 296 1_555 E NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.743 ? metalc ? metalc3 A O SER 298 A SER 297 1_555 E NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.102 ? metalc ? metalc4 A OE1 GLU 343 A GLU 342 1_555 E NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc5 A OG SER 388 A SER 387 1_555 E NA NA . A NA 501 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.643 ? metalc ? metalc6 A O ASN 389 A ASN 388 1_555 E NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.666 ? metalc ? metalc7 B O ASN 297 B ASN 296 1_555 F NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc8 B OD1 ASN 297 B ASN 296 1_555 F NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.683 ? metalc ? metalc9 B O SER 298 B SER 297 1_555 F NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.126 ? metalc ? metalc10 B OE1 GLU 343 B GLU 342 1_555 F NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc11 B OG SER 388 B SER 387 1_555 F NA NA . B NA 501 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.684 ? metalc ? metalc12 B O ASN 389 B ASN 388 1_555 F NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7SZ9 _atom_sites.fract_transf_matrix[1][1] 0.016821 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005556 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009654 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013284 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NA A 1 501 3 NA NA . F 3 NA B 1 501 1 NA NA . G 4 DJ5 C 1 101 2 DJ5 PNS . H 4 DJ5 D 1 101 1 DJ5 PNS . I 5 HOH A 1 601 130 HOH HOH . I 5 HOH A 2 602 55 HOH HOH . I 5 HOH A 3 603 35 HOH HOH . I 5 HOH A 4 604 45 HOH HOH . I 5 HOH A 5 605 132 HOH HOH . I 5 HOH A 6 606 3 HOH HOH . I 5 HOH A 7 607 164 HOH HOH . I 5 HOH A 8 608 71 HOH HOH . I 5 HOH A 9 609 21 HOH HOH . I 5 HOH A 10 610 84 HOH HOH . I 5 HOH A 11 611 166 HOH HOH . I 5 HOH A 12 612 78 HOH HOH . I 5 HOH A 13 613 102 HOH HOH . I 5 HOH A 14 614 47 HOH HOH . I 5 HOH A 15 615 138 HOH HOH . I 5 HOH A 16 616 19 HOH HOH . I 5 HOH A 17 617 111 HOH HOH . I 5 HOH A 18 618 82 HOH HOH . I 5 HOH A 19 619 63 HOH HOH . I 5 HOH A 20 620 57 HOH HOH . I 5 HOH A 21 621 105 HOH HOH . I 5 HOH A 22 622 50 HOH HOH . I 5 HOH A 23 623 162 HOH HOH . I 5 HOH A 24 624 38 HOH HOH . I 5 HOH A 25 625 128 HOH HOH . I 5 HOH A 26 626 33 HOH HOH . I 5 HOH A 27 627 99 HOH HOH . I 5 HOH A 28 628 158 HOH HOH . I 5 HOH A 29 629 62 HOH HOH . I 5 HOH A 30 630 9 HOH HOH . I 5 HOH A 31 631 43 HOH HOH . I 5 HOH A 32 632 25 HOH HOH . I 5 HOH A 33 633 70 HOH HOH . I 5 HOH A 34 634 156 HOH HOH . I 5 HOH A 35 635 34 HOH HOH . I 5 HOH A 36 636 16 HOH HOH . I 5 HOH A 37 637 118 HOH HOH . I 5 HOH A 38 638 92 HOH HOH . I 5 HOH A 39 639 41 HOH HOH . I 5 HOH A 40 640 44 HOH HOH . I 5 HOH A 41 641 54 HOH HOH . I 5 HOH A 42 642 86 HOH HOH . I 5 HOH A 43 643 13 HOH HOH . I 5 HOH A 44 644 95 HOH HOH . I 5 HOH A 45 645 29 HOH HOH . I 5 HOH A 46 646 65 HOH HOH . I 5 HOH A 47 647 149 HOH HOH . I 5 HOH A 48 648 36 HOH HOH . I 5 HOH A 49 649 135 HOH HOH . I 5 HOH A 50 650 6 HOH HOH . I 5 HOH A 51 651 48 HOH HOH . I 5 HOH A 52 652 51 HOH HOH . I 5 HOH A 53 653 59 HOH HOH . I 5 HOH A 54 654 28 HOH HOH . I 5 HOH A 55 655 98 HOH HOH . I 5 HOH A 56 656 39 HOH HOH . I 5 HOH A 57 657 123 HOH HOH . I 5 HOH A 58 658 17 HOH HOH . I 5 HOH A 59 659 40 HOH HOH . I 5 HOH A 60 660 148 HOH HOH . I 5 HOH A 61 661 141 HOH HOH . I 5 HOH A 62 662 124 HOH HOH . I 5 HOH A 63 663 42 HOH HOH . I 5 HOH A 64 664 157 HOH HOH . I 5 HOH A 65 665 159 HOH HOH . I 5 HOH A 66 666 114 HOH HOH . I 5 HOH A 67 667 37 HOH HOH . I 5 HOH A 68 668 77 HOH HOH . I 5 HOH A 69 669 80 HOH HOH . I 5 HOH A 70 670 73 HOH HOH . J 5 HOH B 1 601 110 HOH HOH . J 5 HOH B 2 602 119 HOH HOH . J 5 HOH B 3 603 66 HOH HOH . J 5 HOH B 4 604 4 HOH HOH . J 5 HOH B 5 605 115 HOH HOH . J 5 HOH B 6 606 131 HOH HOH . J 5 HOH B 7 607 27 HOH HOH . J 5 HOH B 8 608 140 HOH HOH . J 5 HOH B 9 609 168 HOH HOH . J 5 HOH B 10 610 64 HOH HOH . J 5 HOH B 11 611 107 HOH HOH . J 5 HOH B 12 612 113 HOH HOH . J 5 HOH B 13 613 12 HOH HOH . J 5 HOH B 14 614 23 HOH HOH . J 5 HOH B 15 615 143 HOH HOH . J 5 HOH B 16 616 11 HOH HOH . J 5 HOH B 17 617 8 HOH HOH . J 5 HOH B 18 618 30 HOH HOH . J 5 HOH B 19 619 151 HOH HOH . J 5 HOH B 20 620 31 HOH HOH . J 5 HOH B 21 621 161 HOH HOH . J 5 HOH B 22 622 134 HOH HOH . J 5 HOH B 23 623 117 HOH HOH . J 5 HOH B 24 624 22 HOH HOH . J 5 HOH B 25 625 147 HOH HOH . J 5 HOH B 26 626 127 HOH HOH . J 5 HOH B 27 627 15 HOH HOH . J 5 HOH B 28 628 160 HOH HOH . J 5 HOH B 29 629 53 HOH HOH . J 5 HOH B 30 630 139 HOH HOH . J 5 HOH B 31 631 85 HOH HOH . J 5 HOH B 32 632 76 HOH HOH . J 5 HOH B 33 633 10 HOH HOH . J 5 HOH B 34 634 83 HOH HOH . J 5 HOH B 35 635 7 HOH HOH . J 5 HOH B 36 636 68 HOH HOH . J 5 HOH B 37 637 18 HOH HOH . J 5 HOH B 38 638 72 HOH HOH . J 5 HOH B 39 639 46 HOH HOH . J 5 HOH B 40 640 1 HOH HOH . J 5 HOH B 41 641 52 HOH HOH . J 5 HOH B 42 642 112 HOH HOH . J 5 HOH B 43 643 20 HOH HOH . J 5 HOH B 44 644 75 HOH HOH . J 5 HOH B 45 645 116 HOH HOH . J 5 HOH B 46 646 106 HOH HOH . J 5 HOH B 47 647 133 HOH HOH . J 5 HOH B 48 648 49 HOH HOH . J 5 HOH B 49 649 74 HOH HOH . J 5 HOH B 50 650 155 HOH HOH . J 5 HOH B 51 651 60 HOH HOH . J 5 HOH B 52 652 26 HOH HOH . J 5 HOH B 53 653 67 HOH HOH . J 5 HOH B 54 654 94 HOH HOH . J 5 HOH B 55 655 96 HOH HOH . J 5 HOH B 56 656 89 HOH HOH . J 5 HOH B 57 657 24 HOH HOH . J 5 HOH B 58 658 14 HOH HOH . J 5 HOH B 59 659 61 HOH HOH . J 5 HOH B 60 660 88 HOH HOH . J 5 HOH B 61 661 91 HOH HOH . J 5 HOH B 62 662 5 HOH HOH . J 5 HOH B 63 663 120 HOH HOH . J 5 HOH B 64 664 56 HOH HOH . J 5 HOH B 65 665 93 HOH HOH . J 5 HOH B 66 666 90 HOH HOH . J 5 HOH B 67 667 100 HOH HOH . J 5 HOH B 68 668 126 HOH HOH . J 5 HOH B 69 669 87 HOH HOH . J 5 HOH B 70 670 104 HOH HOH . J 5 HOH B 71 671 32 HOH HOH . J 5 HOH B 72 672 150 HOH HOH . J 5 HOH B 73 673 79 HOH HOH . J 5 HOH B 74 674 165 HOH HOH . J 5 HOH B 75 675 144 HOH HOH . J 5 HOH B 76 676 146 HOH HOH . J 5 HOH B 77 677 163 HOH HOH . J 5 HOH B 78 678 152 HOH HOH . J 5 HOH B 79 679 137 HOH HOH . J 5 HOH B 80 680 153 HOH HOH . K 5 HOH C 1 201 145 HOH HOH . K 5 HOH C 2 202 136 HOH HOH . K 5 HOH C 3 203 108 HOH HOH . K 5 HOH C 4 204 122 HOH HOH . K 5 HOH C 5 205 154 HOH HOH . L 5 HOH D 1 201 121 HOH HOH . L 5 HOH D 2 202 81 HOH HOH . L 5 HOH D 3 203 69 HOH HOH . L 5 HOH D 4 204 103 HOH HOH . L 5 HOH D 5 205 58 HOH HOH . L 5 HOH D 6 206 129 HOH HOH . L 5 HOH D 7 207 109 HOH HOH . L 5 HOH D 8 208 97 HOH HOH . L 5 HOH D 9 209 169 HOH HOH . L 5 HOH D 10 210 142 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x 23.223 _atom_site.Cartn_y 22.628 _atom_site.Cartn_z 7.815 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 34.76 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 501 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #