data_7SZD # _model_server_result.job_id ZFXZKG3vNoIfxmpGk6Kzow _model_server_result.datetime_utc '2024-10-10 18:21:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7szd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":4000}' # _entry.id 7SZD # _exptl.entry_id 7SZD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 316.266 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-[(3R)-3-methyl-2,6-dioxopiperidin-3-yl]-1,3-dioxo-2,3-dihydro-1H-isoindole-5-carboxylic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.614 _cell.angle_gamma 90 _cell.entry_id 7SZD _cell.length_a 65.578 _cell.length_b 79.038 _cell.length_c 100.889 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7SZD _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,G,H 1 1 C,D,F,I,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C15 H12 N2 O6' _chem_comp.formula_weight 316.266 _chem_comp.id DVO _chem_comp.mon_nstd_flag . _chem_comp.name '2-[(3R)-3-methyl-2,6-dioxopiperidin-3-yl]-1,3-dioxo-2,3-dihydro-1H-isoindole-5-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C6 DVO doub 83 n n C6 O3 DVO sing 84 n n C6 C5 DVO sing 85 n n O6 C9 DVO doub 86 n n C4 C5 DVO doub 87 n y C4 C3 DVO sing 88 n y C5 C7 DVO sing 89 n y C9 C3 DVO sing 90 n n C9 N1 DVO sing 91 n n C3 C2 DVO doub 92 n y C7 C8 DVO doub 93 n y C12 C10 DVO sing 94 n n N1 C10 DVO sing 95 n n N1 C1 DVO sing 96 n n C2 C8 DVO sing 97 n y C2 C1 DVO sing 98 n n C13 C10 DVO sing 99 n n C13 C14 DVO sing 100 n n C10 C11 DVO sing 101 n n C1 O1 DVO doub 102 n n C14 C15 DVO sing 103 n n C11 O4 DVO doub 104 n n C11 N2 DVO sing 105 n n C15 N2 DVO sing 106 n n C15 O5 DVO doub 107 n n C4 H1 DVO sing 108 n n C14 H2 DVO sing 109 n n C14 H3 DVO sing 110 n n C7 H4 DVO sing 111 n n C8 H5 DVO sing 112 n n C12 H6 DVO sing 113 n n C12 H7 DVO sing 114 n n C12 H8 DVO sing 115 n n C13 H9 DVO sing 116 n n C13 H10 DVO sing 117 n n N2 H11 DVO sing 118 n n O3 H12 DVO sing 119 n n # _atom_sites.entry_id 7SZD _atom_sites.fract_transf_matrix[1][1] 0.015249 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004262 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012652 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010292 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 DVO A 1 4000 4000 DVO DRG . F 3 DVO C 1 4000 4000 DVO DRG . G 4 HOH A 1 4101 33 HOH HOH . G 4 HOH A 2 4102 8 HOH HOH . G 4 HOH A 3 4103 2 HOH HOH . G 4 HOH A 4 4104 32 HOH HOH . G 4 HOH A 5 4105 25 HOH HOH . G 4 HOH A 6 4106 11 HOH HOH . G 4 HOH A 7 4107 34 HOH HOH . G 4 HOH A 8 4108 19 HOH HOH . G 4 HOH A 9 4109 14 HOH HOH . G 4 HOH A 10 4110 31 HOH HOH . G 4 HOH A 11 4111 17 HOH HOH . G 4 HOH A 12 4112 27 HOH HOH . G 4 HOH A 13 4113 26 HOH HOH . G 4 HOH A 14 4114 22 HOH HOH . G 4 HOH A 15 4115 6 HOH HOH . G 4 HOH A 16 4116 30 HOH HOH . G 4 HOH A 17 4117 7 HOH HOH . G 4 HOH A 18 4118 15 HOH HOH . G 4 HOH A 19 4119 46 HOH HOH . G 4 HOH A 20 4120 42 HOH HOH . H 4 HOH B 1 201 41 HOH HOH . H 4 HOH B 2 202 23 HOH HOH . H 4 HOH B 3 203 20 HOH HOH . H 4 HOH B 4 204 39 HOH HOH . H 4 HOH B 5 205 3 HOH HOH . H 4 HOH B 6 206 5 HOH HOH . H 4 HOH B 7 207 28 HOH HOH . H 4 HOH B 8 208 43 HOH HOH . H 4 HOH B 9 209 45 HOH HOH . H 4 HOH B 10 210 37 HOH HOH . I 4 HOH C 1 4101 44 HOH HOH . I 4 HOH C 2 4102 21 HOH HOH . I 4 HOH C 3 4103 13 HOH HOH . I 4 HOH C 4 4104 36 HOH HOH . I 4 HOH C 5 4105 18 HOH HOH . I 4 HOH C 6 4106 12 HOH HOH . I 4 HOH C 7 4107 35 HOH HOH . I 4 HOH C 8 4108 47 HOH HOH . I 4 HOH C 9 4109 48 HOH HOH . I 4 HOH C 10 4110 9 HOH HOH . I 4 HOH C 11 4111 10 HOH HOH . J 4 HOH D 1 201 29 HOH HOH . J 4 HOH D 2 202 24 HOH HOH . J 4 HOH D 3 203 4 HOH HOH . J 4 HOH D 4 204 1 HOH HOH . J 4 HOH D 5 205 16 HOH HOH . J 4 HOH D 6 206 40 HOH HOH . J 4 HOH D 7 207 38 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 DVO . . . E 3 13.65 -12.071 35.144 1 27.54 ? C4 DVO 4000 A 1 HETATM 2 C C14 DVO . . . E 3 11.591 -18.336 38.15 1 35.39 ? C14 DVO 4000 A 1 HETATM 3 C C5 DVO . . . E 3 13.286 -10.763 35.45 1 23.07 ? C5 DVO 4000 A 1 HETATM 4 C C6 DVO . . . E 3 13.536 -9.707 34.419 1 24.01 ? C6 DVO 4000 A 1 HETATM 5 C C11 DVO . . . E 3 13.669 -16.552 39.074 1 33.32 ? C11 DVO 4000 A 1 HETATM 6 C C7 DVO . . . E 3 12.692 -10.464 36.676 1 16.53 ? C7 DVO 4000 A 1 HETATM 7 C C8 DVO . . . E 3 12.456 -11.459 37.625 1 20.45 ? C8 DVO 4000 A 1 HETATM 8 C C9 DVO . . . E 3 13.704 -14.496 36.044 1 35.95 ? C9 DVO 4000 A 1 HETATM 9 C C10 DVO . . . E 3 13.166 -16.44 37.663 1 34.94 ? C10 DVO 4000 A 1 HETATM 10 C C12 DVO . . . E 3 14.079 -17.381 36.845 1 35.85 ? C12 DVO 4000 A 1 HETATM 11 C C13 DVO . . . E 3 11.726 -16.946 37.544 1 32.63 ? C13 DVO 4000 A 1 HETATM 12 N N1 DVO . . . E 3 13.308 -15.016 37.292 1 34.29 ? N1 DVO 4000 A 1 HETATM 13 N N2 DVO . . . E 3 13.094 -17.496 39.896 1 38.04 ? N2 DVO 4000 A 1 HETATM 14 C C3 DVO . . . E 3 13.416 -13.041 36.091 1 25.94 ? C3 DVO 4000 A 1 HETATM 15 C C1 DVO . . . E 3 12.704 -14.015 38.074 1 30.07 ? C1 DVO 4000 A 1 HETATM 16 C C15 DVO . . . E 3 12.153 -18.438 39.533 1 40 ? C15 DVO 4000 A 1 HETATM 17 C C2 DVO . . . E 3 12.827 -12.749 37.304 1 21.87 ? C2 DVO 4000 A 1 HETATM 18 O O1 DVO . . . E 3 12.176 -14.199 39.144 1 35.18 ? O1 DVO 4000 A 1 HETATM 19 O O2 DVO . . . E 3 14.058 -10.06 33.341 1 25.09 ? O2 DVO 4000 A 1 HETATM 20 O O3 DVO . . . E 3 13.199 -8.538 34.69 1 29.02 ? O3 DVO 4000 A 1 HETATM 21 O O4 DVO . . . E 3 14.569 -15.845 39.481 1 32.68 ? O4 DVO 4000 A 1 HETATM 22 O O5 DVO . . . E 3 11.817 -19.302 40.325 1 41.45 ? O5 DVO 4000 A 1 HETATM 23 O O6 DVO . . . E 3 14.163 -15.127 35.122 1 44.3 ? O6 DVO 4000 A 1 # _model_server_stats.io_time_ms 32 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 23 #