data_7SZT # _model_server_result.job_id l5nwMjUJlcXejC2boHJdnA _model_server_result.datetime_utc '2024-10-16 12:19:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7szt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":301}' # _entry.id 7SZT # _exptl.entry_id 7SZT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 246.369 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'Dodecyldimethylphosphine oxide' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 93.56 _cell.angle_beta 89.71 _cell.angle_gamma 109.92 _cell.entry_id 7SZT _cell.length_a 49.704 _cell.length_b 74.323 _cell.length_c 107.433 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7SZT _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 ? tetrameric 4 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,F,H,I,J 1 1 C,D,E,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 J N N # _chem_comp.formula 'C14 H31 O P' _chem_comp.formula_weight 246.369 _chem_comp.id 9PD _chem_comp.mon_nstd_flag . _chem_comp.name 'Dodecyldimethylphosphine oxide' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms APO-12 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C14 P13 9PD sing 1 n n C03 C02 9PD sing 2 n n C03 C04 9PD sing 3 n n C02 C01 9PD sing 4 n n C12 P13 9PD sing 5 n n C12 C11 9PD sing 6 n n P13 O16 9PD doub 7 n n P13 C15 9PD sing 8 n n C04 C05 9PD sing 9 n n C05 C06 9PD sing 10 n n C11 C10 9PD sing 11 n n C09 C10 9PD sing 12 n n C09 C08 9PD sing 13 n n C06 C07 9PD sing 14 n n C07 C08 9PD sing 15 n n C01 H1 9PD sing 16 n n C01 H2 9PD sing 17 n n C01 H3 9PD sing 18 n n C02 H4 9PD sing 19 n n C02 H5 9PD sing 20 n n C03 H6 9PD sing 21 n n C03 H7 9PD sing 22 n n C04 H8 9PD sing 23 n n C04 H9 9PD sing 24 n n C05 H10 9PD sing 25 n n C05 H11 9PD sing 26 n n C06 H12 9PD sing 27 n n C06 H13 9PD sing 28 n n C07 H14 9PD sing 29 n n C07 H15 9PD sing 30 n n C08 H16 9PD sing 31 n n C08 H17 9PD sing 32 n n C09 H18 9PD sing 33 n n C09 H19 9PD sing 34 n n C10 H20 9PD sing 35 n n C10 H21 9PD sing 36 n n C11 H22 9PD sing 37 n n C11 H23 9PD sing 38 n n C12 H24 9PD sing 39 n n C12 H25 9PD sing 40 n n C14 H26 9PD sing 41 n n C14 H27 9PD sing 42 n n C14 H28 9PD sing 43 n n C15 H29 9PD sing 44 n n C15 H30 9PD sing 45 n n C15 H31 9PD sing 46 n n # _atom_sites.entry_id 7SZT _atom_sites.fract_transf_matrix[1][1] 0.020119 _atom_sites.fract_transf_matrix[1][2] 0.007293 _atom_sites.fract_transf_matrix[1][3] 0.000369 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014311 _atom_sites.fract_transf_matrix[2][3] 0.000922 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009328 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 9PD A 1 201 201 9PD LIG . J 3 9PD F 1 301 301 9PD LIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C06 9PD . . . J 3 21.084 -11.193 -15.205 1 43.71 ? C06 9PD 301 F 1 HETATM 2 C C07 9PD . . . J 3 22.035 -11.636 -14.096 1 35.35 ? C07 9PD 301 F 1 HETATM 3 C C08 9PD . . . J 3 21.6 -12.949 -13.456 1 41.95 ? C08 9PD 301 F 1 HETATM 4 C C09 9PD . . . J 3 22.806 -13.778 -13.031 1 30.82 ? C09 9PD 301 F 1 HETATM 5 C C10 9PD . . . J 3 23.218 -14.742 -14.14 1 45.48 ? C10 9PD 301 F 1 HETATM 6 C C11 9PD . . . J 3 24.424 -15.591 -13.753 1 35.26 ? C11 9PD 301 F 1 HETATM 7 C C12 9PD . . . J 3 24.107 -17.08 -13.862 1 44.45 ? C12 9PD 301 F 1 HETATM 8 P P13 9PD . . . J 3 25.576 -18.143 -13.442 1 56.3 ? P13 9PD 301 F 1 HETATM 9 C C14 9PD . . . J 3 26.178 -17.75 -11.731 1 36.17 ? C14 9PD 301 F 1 HETATM 10 C C15 9PD . . . J 3 26.957 -17.809 -14.644 1 43.44 ? C15 9PD 301 F 1 HETATM 11 O O16 9PD . . . J 3 25.189 -19.55 -13.487 1 64.8 ? O16 9PD 301 F 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 11 #