data_7T2B # _model_server_result.job_id e8e1hv7IXXw-pMlHlTID-g _model_server_result.datetime_utc '2025-08-21 03:16:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7t2b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"IA","auth_seq_id":201}' # _entry.id 7T2B # _exptl.entry_id 7T2B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 7 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7T2B _cell.length_a 107.05 _cell.length_b 110.78 _cell.length_c 403.253 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7T2B _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? pentameric 5 author_defined_assembly 1 ? pentameric 5 author_defined_assembly 2 ? pentameric 5 author_defined_assembly 3 ? pentameric 5 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,M,N,U,X,Y,Z,AA,JA,OA,TA 1 1 D,E,F,O,P,V,BA,CA,DA,KA,PA,QA 2 1 G,H,I,Q,R,EA,FA,LA,MA,UA 3 1 J,K,L,S,T,W,GA,HA,IA,NA,RA,SA 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 X N N ? 7 Z N N ? 7 BA N N ? 7 DA N N ? 7 EA N N ? 7 FA N N ? 7 GA N N ? 7 IA N N # _pdbx_entity_branch.entity_id 6 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 6 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 6 n U NAG 1 U 1 NAG A 182 NAG 6 n U NAG 2 U 2 NAG A 183 NAG 6 n V NAG 1 V 1 NAG F 182 NAG 6 n V NAG 2 V 2 NAG F 183 NAG 6 n W NAG 1 W 1 NAG P 182 NAG 6 n W NAG 2 W 2 NAG P 183 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 107 A CYS 107 1_555 A SG CYS 163 A CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 B SG CYS 17 B CYS 15 1_555 B SG CYS 79 B CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 B SG CYS 117 B CYS 117 1_555 B SG CYS 173 B CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf4 D SG CYS 107 F CYS 107 1_555 D SG CYS 163 F CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf5 E SG CYS 17 G CYS 15 1_555 E SG CYS 79 G CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 E SG CYS 117 G CYS 117 1_555 E SG CYS 173 G CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf7 G SG CYS 107 K CYS 107 1_555 G SG CYS 163 K CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 H SG CYS 17 L CYS 15 1_555 H SG CYS 79 L CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf9 H SG CYS 117 L CYS 117 1_555 H SG CYS 173 L CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf10 J SG CYS 107 P CYS 107 1_555 J SG CYS 163 P CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf11 K SG CYS 17 Q CYS 15 1_555 K SG CYS 79 Q CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf12 K SG CYS 117 Q CYS 117 1_555 K SG CYS 173 Q CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf13 M SG CYS 23 D CYS 23 1_555 M SG CYS 89 D CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf14 M SG CYS 136 D CYS 151 1_555 M SG CYS 186 D CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf15 M SG CYS 161 D CYS 176 1_555 N SG CYS 168 E CYS 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.643 sing disulf ? disulf16 N SG CYS 23 E CYS 23 1_555 N SG CYS 91 E CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf17 N SG CYS 142 E CYS 158 1_555 N SG CYS 207 E CYS 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf18 O SG CYS 23 I CYS 23 1_555 O SG CYS 89 I CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf19 O SG CYS 136 I CYS 151 1_555 O SG CYS 186 I CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf20 O SG CYS 161 I CYS 176 1_555 P SG CYS 168 J CYS 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.563 sing disulf ? disulf21 P SG CYS 23 J CYS 23 1_555 P SG CYS 91 J CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf22 P SG CYS 142 J CYS 158 1_555 P SG CYS 207 J CYS 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf23 Q SG CYS 23 N CYS 23 1_555 Q SG CYS 89 N CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf24 Q SG CYS 136 N CYS 151 1_555 Q SG CYS 186 N CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf25 Q SG CYS 161 N CYS 176 1_555 R SG CYS 168 O CYS 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.287 sing disulf ? disulf26 R SG CYS 23 O CYS 23 1_555 R SG CYS 91 O CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf27 R SG CYS 142 O CYS 158 1_555 R SG CYS 207 O CYS 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf28 S SG CYS 23 S CYS 23 1_555 S SG CYS 89 S CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf29 S SG CYS 136 S CYS 151 1_555 S SG CYS 186 S CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf30 S SG CYS 161 S CYS 176 1_555 T SG CYS 168 T CYS 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.788 sing disulf ? disulf31 T SG CYS 23 T CYS 23 1_555 T SG CYS 91 T CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf32 T SG CYS 142 T CYS 158 1_555 T SG CYS 207 T CYS 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? covale ? covale1 A ND2 ASN 78 A ASN 78 1_555 X C1 NAG . A NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale2 A ND2 ASN 118 A ASN 118 1_555 U C1 NAG . U NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale3 B ND2 ASN 21 B ASN 19 1_555 Z C1 NAG . B NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale4 D ND2 ASN 78 F ASN 78 1_555 BA C1 NAG . F NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale5 D ND2 ASN 118 F ASN 118 1_555 V C1 NAG . V NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale6 E ND2 ASN 21 G ASN 19 1_555 DA C1 NAG . G NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale7 G ND2 ASN 78 K ASN 78 1_555 EA C1 NAG . K NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale8 G ND2 ASN 118 K ASN 118 1_555 FA C1 NAG . K NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale9 J ND2 ASN 78 P ASN 78 1_555 GA C1 NAG . P NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale10 J ND2 ASN 118 P ASN 118 1_555 W C1 NAG . W NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale11 K ND2 ASN 21 Q ASN 19 1_555 IA C1 NAG . Q NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale12 U O4 NAG . U NAG 1 1_555 U C1 NAG . U NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale13 V O4 NAG . V NAG 1 1_555 V C1 NAG . V NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale14 W O4 NAG . W NAG 1 1_555 W C1 NAG . W NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 246 n n C1 O1 NAG sing 247 n n C1 O5 NAG sing 248 n n C1 H1 NAG sing 249 n n C2 C3 NAG sing 250 n n C2 N2 NAG sing 251 n n C2 H2 NAG sing 252 n n C3 C4 NAG sing 253 n n C3 O3 NAG sing 254 n n C3 H3 NAG sing 255 n n C4 C5 NAG sing 256 n n C4 O4 NAG sing 257 n n C4 H4 NAG sing 258 n n C5 C6 NAG sing 259 n n C5 O5 NAG sing 260 n n C5 H5 NAG sing 261 n n C6 O6 NAG sing 262 n n C6 H61 NAG sing 263 n n C6 H62 NAG sing 264 n n C7 C8 NAG sing 265 n n C7 N2 NAG sing 266 n n C7 O7 NAG doub 267 n n C8 H81 NAG sing 268 n n C8 H82 NAG sing 269 n n C8 H83 NAG sing 270 n n N2 HN2 NAG sing 271 n n O1 HO1 NAG sing 272 n n O3 HO3 NAG sing 273 n n O4 HO4 NAG sing 274 n n O6 HO6 NAG sing 275 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7T2B _atom_sites.fract_transf_matrix[1][1] 0.009341 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009027 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00248 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code X 7 NAG A 1 201 181 NAG NAG . Y 8 EDO A 1 202 184 EDO EDO . Z 7 NAG B 1 201 189 NAG NAG . AA 8 EDO B 1 202 220 EDO EDO . BA 7 NAG F 1 201 181 NAG NAG . CA 8 EDO F 1 202 184 EDO EDO . DA 7 NAG G 1 201 190 NAG NAG . EA 7 NAG K 1 201 181 NAG NAG . FA 7 NAG K 1 202 182 NAG NAG . GA 7 NAG P 1 201 181 NAG NAG . HA 8 EDO P 1 202 184 EDO EDO . IA 7 NAG Q 1 201 190 NAG NAG . JA 8 EDO E 1 301 258 EDO EDO . KA 8 EDO J 1 301 258 EDO EDO . LA 8 EDO N 1 301 220 EDO EDO . MA 8 EDO N 1 302 221 EDO EDO . NA 8 EDO S 1 301 220 EDO EDO . OA 9 HOH A 1 301 8 HOH HOH . OA 9 HOH A 2 302 7 HOH HOH . PA 9 HOH F 1 301 9 HOH HOH . PA 9 HOH F 2 302 4 HOH HOH . PA 9 HOH F 3 303 10 HOH HOH . QA 9 HOH G 1 301 1 HOH HOH . RA 9 HOH P 1 301 2 HOH HOH . SA 9 HOH Q 1 301 3 HOH HOH . TA 9 HOH D 1 301 6 HOH HOH . UA 9 HOH O 1 301 5 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . IA 7 44.702 -6.58 13.982 1 111.75 ? C1 NAG 201 Q 1 HETATM 2 C C2 NAG . . . IA 7 44.97 -5.556 12.874 1 114.79 ? C2 NAG 201 Q 1 HETATM 3 C C3 NAG . . . IA 7 46.466 -5.466 12.586 1 122.5 ? C3 NAG 201 Q 1 HETATM 4 C C4 NAG . . . IA 7 47.243 -5.205 13.87 1 133.81 ? C4 NAG 201 Q 1 HETATM 5 C C5 NAG . . . IA 7 46.883 -6.247 14.925 1 116.83 ? C5 NAG 201 Q 1 HETATM 6 C C6 NAG . . . IA 7 47.538 -5.985 16.26 1 117.81 ? C6 NAG 201 Q 1 HETATM 7 C C7 NAG . . . IA 7 43.12 -5.261 11.288 1 98.75 ? C7 NAG 201 Q 1 HETATM 8 C C8 NAG . . . IA 7 42.493 -5.739 10.012 1 82.24 ? C8 NAG 201 Q 1 HETATM 9 N N2 NAG . . . IA 7 44.237 -5.892 11.664 1 107.42 ? N2 NAG 201 Q 1 HETATM 10 O O3 NAG . . . IA 7 46.707 -4.422 11.648 1 108.96 ? O3 NAG 201 Q 1 HETATM 11 O O4 NAG . . . IA 7 48.642 -5.25 13.613 1 120.66 ? O4 NAG 201 Q 1 HETATM 12 O O5 NAG . . . IA 7 45.465 -6.239 15.149 1 111.02 ? O5 NAG 201 Q 1 HETATM 13 O O6 NAG . . . IA 7 46.927 -4.887 16.922 1 106.7 ? O6 NAG 201 Q 1 HETATM 14 O O7 NAG . . . IA 7 42.632 -4.352 11.952 1 96.71 ? O7 NAG 201 Q 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 57 _model_server_stats.query_time_ms 398 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #