data_7T2B # _model_server_result.job_id tdGWOeXRgsWB00SBZHnASg _model_server_result.datetime_utc '2025-08-21 03:18:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7t2b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"LA","auth_seq_id":301}' # _entry.id 7T2B # _exptl.entry_id 7T2B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7T2B _cell.length_a 107.05 _cell.length_b 110.78 _cell.length_c 403.253 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7T2B _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? pentameric 5 author_defined_assembly 1 ? pentameric 5 author_defined_assembly 2 ? pentameric 5 author_defined_assembly 3 ? pentameric 5 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,M,N,U,X,Y,Z,AA,JA,OA,TA 1 1 D,E,F,O,P,V,BA,CA,DA,KA,PA,QA 2 1 G,H,I,Q,R,EA,FA,LA,MA,UA 3 1 J,K,L,S,T,W,GA,HA,IA,NA,RA,SA 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 Y N N ? 8 AA N N ? 8 CA N N ? 8 HA N N ? 8 JA N N ? 8 KA N N ? 8 LA N N ? 8 MA N N ? 8 NA N N # _pdbx_entity_branch.entity_id 6 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 6 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 6 n U NAG 1 U 1 NAG A 182 NAG 6 n U NAG 2 U 2 NAG A 183 NAG 6 n V NAG 1 V 1 NAG F 182 NAG 6 n V NAG 2 V 2 NAG F 183 NAG 6 n W NAG 1 W 1 NAG P 182 NAG 6 n W NAG 2 W 2 NAG P 183 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 107 A CYS 107 1_555 A SG CYS 163 A CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 B SG CYS 17 B CYS 15 1_555 B SG CYS 79 B CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 B SG CYS 117 B CYS 117 1_555 B SG CYS 173 B CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf4 D SG CYS 107 F CYS 107 1_555 D SG CYS 163 F CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf5 E SG CYS 17 G CYS 15 1_555 E SG CYS 79 G CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 E SG CYS 117 G CYS 117 1_555 E SG CYS 173 G CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf7 G SG CYS 107 K CYS 107 1_555 G SG CYS 163 K CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 H SG CYS 17 L CYS 15 1_555 H SG CYS 79 L CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf9 H SG CYS 117 L CYS 117 1_555 H SG CYS 173 L CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf10 J SG CYS 107 P CYS 107 1_555 J SG CYS 163 P CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf11 K SG CYS 17 Q CYS 15 1_555 K SG CYS 79 Q CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf12 K SG CYS 117 Q CYS 117 1_555 K SG CYS 173 Q CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf13 M SG CYS 23 D CYS 23 1_555 M SG CYS 89 D CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf14 M SG CYS 136 D CYS 151 1_555 M SG CYS 186 D CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf15 M SG CYS 161 D CYS 176 1_555 N SG CYS 168 E CYS 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.643 sing disulf ? disulf16 N SG CYS 23 E CYS 23 1_555 N SG CYS 91 E CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf17 N SG CYS 142 E CYS 158 1_555 N SG CYS 207 E CYS 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf18 O SG CYS 23 I CYS 23 1_555 O SG CYS 89 I CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf19 O SG CYS 136 I CYS 151 1_555 O SG CYS 186 I CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf20 O SG CYS 161 I CYS 176 1_555 P SG CYS 168 J CYS 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.563 sing disulf ? disulf21 P SG CYS 23 J CYS 23 1_555 P SG CYS 91 J CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf22 P SG CYS 142 J CYS 158 1_555 P SG CYS 207 J CYS 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf23 Q SG CYS 23 N CYS 23 1_555 Q SG CYS 89 N CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf24 Q SG CYS 136 N CYS 151 1_555 Q SG CYS 186 N CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf25 Q SG CYS 161 N CYS 176 1_555 R SG CYS 168 O CYS 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.287 sing disulf ? disulf26 R SG CYS 23 O CYS 23 1_555 R SG CYS 91 O CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf27 R SG CYS 142 O CYS 158 1_555 R SG CYS 207 O CYS 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf28 S SG CYS 23 S CYS 23 1_555 S SG CYS 89 S CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf29 S SG CYS 136 S CYS 151 1_555 S SG CYS 186 S CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf30 S SG CYS 161 S CYS 176 1_555 T SG CYS 168 T CYS 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.788 sing disulf ? disulf31 T SG CYS 23 T CYS 23 1_555 T SG CYS 91 T CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf32 T SG CYS 142 T CYS 158 1_555 T SG CYS 207 T CYS 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? covale ? covale1 A ND2 ASN 78 A ASN 78 1_555 X C1 NAG . A NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale2 A ND2 ASN 118 A ASN 118 1_555 U C1 NAG . U NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale3 B ND2 ASN 21 B ASN 19 1_555 Z C1 NAG . B NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale4 D ND2 ASN 78 F ASN 78 1_555 BA C1 NAG . F NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale5 D ND2 ASN 118 F ASN 118 1_555 V C1 NAG . V NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale6 E ND2 ASN 21 G ASN 19 1_555 DA C1 NAG . G NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale7 G ND2 ASN 78 K ASN 78 1_555 EA C1 NAG . K NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale8 G ND2 ASN 118 K ASN 118 1_555 FA C1 NAG . K NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale9 J ND2 ASN 78 P ASN 78 1_555 GA C1 NAG . P NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale10 J ND2 ASN 118 P ASN 118 1_555 W C1 NAG . W NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale11 K ND2 ASN 21 Q ASN 19 1_555 IA C1 NAG . Q NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale12 U O4 NAG . U NAG 1 1_555 U C1 NAG . U NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale13 V O4 NAG . V NAG 1 1_555 V C1 NAG . V NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale14 W O4 NAG . W NAG 1 1_555 W C1 NAG . W NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 7T2B _atom_sites.fract_transf_matrix[1][1] 0.009341 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009027 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00248 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code X 7 NAG A 1 201 181 NAG NAG . Y 8 EDO A 1 202 184 EDO EDO . Z 7 NAG B 1 201 189 NAG NAG . AA 8 EDO B 1 202 220 EDO EDO . BA 7 NAG F 1 201 181 NAG NAG . CA 8 EDO F 1 202 184 EDO EDO . DA 7 NAG G 1 201 190 NAG NAG . EA 7 NAG K 1 201 181 NAG NAG . FA 7 NAG K 1 202 182 NAG NAG . GA 7 NAG P 1 201 181 NAG NAG . HA 8 EDO P 1 202 184 EDO EDO . IA 7 NAG Q 1 201 190 NAG NAG . JA 8 EDO E 1 301 258 EDO EDO . KA 8 EDO J 1 301 258 EDO EDO . LA 8 EDO N 1 301 220 EDO EDO . MA 8 EDO N 1 302 221 EDO EDO . NA 8 EDO S 1 301 220 EDO EDO . OA 9 HOH A 1 301 8 HOH HOH . OA 9 HOH A 2 302 7 HOH HOH . PA 9 HOH F 1 301 9 HOH HOH . PA 9 HOH F 2 302 4 HOH HOH . PA 9 HOH F 3 303 10 HOH HOH . QA 9 HOH G 1 301 1 HOH HOH . RA 9 HOH P 1 301 2 HOH HOH . SA 9 HOH Q 1 301 3 HOH HOH . TA 9 HOH D 1 301 6 HOH HOH . UA 9 HOH O 1 301 5 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . LA 8 0.572 -51.977 42.216 1 74.11 ? C1 EDO 301 N 1 HETATM 2 O O1 EDO . . . LA 8 1.411 -52.121 43.367 1 66.75 ? O1 EDO 301 N 1 HETATM 3 C C2 EDO . . . LA 8 1.306 -52.506 40.992 1 55.45 ? C2 EDO 301 N 1 HETATM 4 O O2 EDO . . . LA 8 1.717 -53.855 41.237 1 52.62 ? O2 EDO 301 N 1 # _model_server_stats.io_time_ms 147 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 243 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 4 #