data_7T33 # _model_server_result.job_id 2QUGaav1YL33QaChwLplXg _model_server_result.datetime_utc '2024-11-15 15:21:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7t33 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":402}' # _entry.id 7T33 # _exptl.entry_id 7T33 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7T33 _cell.length_a 57.084 _cell.length_b 57.084 _cell.length_c 121.459 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7T33 _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 H N N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 7T33 _atom_sites.fract_transf_matrix[1][1] 0.017518 _atom_sites.fract_transf_matrix[1][2] 0.010114 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020228 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008233 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 501 501 SO4 SO4 . D 3 FMN A 1 502 601 FMN FMN . E 4 NIO A 1 503 401 NIO NIO . F 2 SO4 A 1 504 501 SO4 SO4 . G 4 NIO B 1 401 401 NIO NIO . H 3 FMN B 1 402 601 FMN FMN . I 5 HOH A 1 601 25 HOH HOH . I 5 HOH A 2 602 15 HOH HOH . I 5 HOH A 3 603 8 HOH HOH . I 5 HOH A 4 604 13 HOH HOH . I 5 HOH A 5 605 3 HOH HOH . I 5 HOH A 6 606 31 HOH HOH . I 5 HOH A 7 607 39 HOH HOH . I 5 HOH A 8 608 18 HOH HOH . I 5 HOH A 9 609 20 HOH HOH . I 5 HOH A 10 610 1 HOH HOH . I 5 HOH A 11 611 21 HOH HOH . I 5 HOH A 12 612 32 HOH HOH . I 5 HOH A 13 613 30 HOH HOH . I 5 HOH A 14 614 11 HOH HOH . I 5 HOH A 15 615 16 HOH HOH . I 5 HOH A 16 616 28 HOH HOH . I 5 HOH A 17 617 5 HOH HOH . I 5 HOH A 18 618 22 HOH HOH . I 5 HOH A 19 619 26 HOH HOH . I 5 HOH A 20 620 10 HOH HOH . I 5 HOH A 21 621 34 HOH HOH . I 5 HOH A 22 622 27 HOH HOH . J 5 HOH B 1 501 38 HOH HOH . J 5 HOH B 2 502 7 HOH HOH . J 5 HOH B 3 503 2 HOH HOH . J 5 HOH B 4 504 14 HOH HOH . J 5 HOH B 5 505 4 HOH HOH . J 5 HOH B 6 506 45 HOH HOH . J 5 HOH B 7 507 12 HOH HOH . J 5 HOH B 8 508 6 HOH HOH . J 5 HOH B 9 509 24 HOH HOH . J 5 HOH B 10 510 29 HOH HOH . J 5 HOH B 11 511 41 HOH HOH . J 5 HOH B 12 512 44 HOH HOH . J 5 HOH B 13 513 9 HOH HOH . J 5 HOH B 14 514 36 HOH HOH . J 5 HOH B 15 515 33 HOH HOH . J 5 HOH B 16 516 19 HOH HOH . J 5 HOH B 17 517 17 HOH HOH . J 5 HOH B 18 518 40 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . H 3 -33.237 3.104 0.231 1 46.41 ? N1 FMN 402 B 1 HETATM 2 C C2 FMN . . . H 3 -34.448 2.669 -0.072 1 50.3 ? C2 FMN 402 B 1 HETATM 3 O O2 FMN . . . H 3 -35.08 3.248 -0.893 1 47.28 ? O2 FMN 402 B 1 HETATM 4 N N3 FMN . . . H 3 -34.971 1.597 0.516 1 48.05 ? N3 FMN 402 B 1 HETATM 5 C C4 FMN . . . H 3 -34.272 0.955 1.414 1 47.01 ? C4 FMN 402 B 1 HETATM 6 O O4 FMN . . . H 3 -34.778 0.006 1.92 1 43.27 ? O4 FMN 402 B 1 HETATM 7 C C4A FMN . . . H 3 -33.026 1.39 1.743 1 47.07 ? C4A FMN 402 B 1 HETATM 8 N N5 FMN . . . H 3 -32.325 0.763 2.642 1 50.83 ? N5 FMN 402 B 1 HETATM 9 C C5A FMN . . . H 3 -31.055 1.016 2.79 1 44.86 ? C5A FMN 402 B 1 HETATM 10 C C6 FMN . . . H 3 -30.327 0.172 3.561 1 41.12 ? C6 FMN 402 B 1 HETATM 11 C C7 FMN . . . H 3 -29.012 0.404 3.742 1 42.66 ? C7 FMN 402 B 1 HETATM 12 C C7M FMN . . . H 3 -28.238 -0.406 4.489 1 38.71 ? C7M FMN 402 B 1 HETATM 13 C C8 FMN . . . H 3 -28.458 1.472 3.136 1 44.92 ? C8 FMN 402 B 1 HETATM 14 C C8M FMN . . . H 3 -27.137 1.685 3.313 1 40.68 ? C8M FMN 402 B 1 HETATM 15 C C9 FMN . . . H 3 -29.208 2.314 2.366 1 41.61 ? C9 FMN 402 B 1 HETATM 16 C C9A FMN . . . H 3 -30.519 2.103 2.18 1 41.91 ? C9A FMN 402 B 1 HETATM 17 N N10 FMN . . . H 3 -31.266 2.893 1.425 1 47.04 ? N10 FMN 402 B 1 HETATM 18 C C10 FMN . . . H 3 -32.497 2.494 1.153 1 47.27 ? C10 FMN 402 B 1 HETATM 19 C C1' FMN . . . H 3 -30.737 4.031 0.684 1 44.83 ? C1' FMN 402 B 1 HETATM 20 C C2' FMN . . . H 3 -30.291 5.253 1.483 1 45.57 ? C2' FMN 402 B 1 HETATM 21 O O2' FMN . . . H 3 -31.382 6.008 1.768 1 44.12 ? O2' FMN 402 B 1 HETATM 22 C C3' FMN . . . H 3 -29.216 6.067 0.742 1 48.08 ? C3' FMN 402 B 1 HETATM 23 O O3' FMN . . . H 3 -28.079 5.303 0.811 1 46.88 ? O3' FMN 402 B 1 HETATM 24 C C4' FMN . . . H 3 -28.879 7.458 1.309 1 46.24 ? C4' FMN 402 B 1 HETATM 25 O O4' FMN . . . H 3 -30.006 8.246 1.406 1 41.47 ? O4' FMN 402 B 1 HETATM 26 C C5' FMN . . . H 3 -27.826 8.183 0.483 1 44.69 ? C5' FMN 402 B 1 HETATM 27 O O5' FMN . . . H 3 -28.023 8.251 -0.903 1 46.91 ? O5' FMN 402 B 1 HETATM 28 P P FMN . . . H 3 -27.216 7.673 -1.856 1 57.56 ? P FMN 402 B 1 HETATM 29 O O1P FMN . . . H 3 -26.076 8.38 -1.884 1 47.91 ? O1P FMN 402 B 1 HETATM 30 O O2P FMN . . . H 3 -27.071 6.373 -1.515 1 43.54 ? O2P FMN 402 B 1 HETATM 31 O O3P FMN . . . H 3 -28.076 7.914 -2.858 1 47.93 ? O3P FMN 402 B 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 31 #