data_7T33 # _model_server_result.job_id JXkcVBfjEB071BUXvvnMKw _model_server_result.datetime_utc '2024-11-15 15:48:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7t33 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 7T33 # _exptl.entry_id 7T33 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7T33 _cell.length_a 57.084 _cell.length_b 57.084 _cell.length_c 121.459 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7T33 _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 H N N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 7T33 _atom_sites.fract_transf_matrix[1][1] 0.017518 _atom_sites.fract_transf_matrix[1][2] 0.010114 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020228 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008233 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 501 501 SO4 SO4 . D 3 FMN A 1 502 601 FMN FMN . E 4 NIO A 1 503 401 NIO NIO . F 2 SO4 A 1 504 501 SO4 SO4 . G 4 NIO B 1 401 401 NIO NIO . H 3 FMN B 1 402 601 FMN FMN . I 5 HOH A 1 601 25 HOH HOH . I 5 HOH A 2 602 15 HOH HOH . I 5 HOH A 3 603 8 HOH HOH . I 5 HOH A 4 604 13 HOH HOH . I 5 HOH A 5 605 3 HOH HOH . I 5 HOH A 6 606 31 HOH HOH . I 5 HOH A 7 607 39 HOH HOH . I 5 HOH A 8 608 18 HOH HOH . I 5 HOH A 9 609 20 HOH HOH . I 5 HOH A 10 610 1 HOH HOH . I 5 HOH A 11 611 21 HOH HOH . I 5 HOH A 12 612 32 HOH HOH . I 5 HOH A 13 613 30 HOH HOH . I 5 HOH A 14 614 11 HOH HOH . I 5 HOH A 15 615 16 HOH HOH . I 5 HOH A 16 616 28 HOH HOH . I 5 HOH A 17 617 5 HOH HOH . I 5 HOH A 18 618 22 HOH HOH . I 5 HOH A 19 619 26 HOH HOH . I 5 HOH A 20 620 10 HOH HOH . I 5 HOH A 21 621 34 HOH HOH . I 5 HOH A 22 622 27 HOH HOH . J 5 HOH B 1 501 38 HOH HOH . J 5 HOH B 2 502 7 HOH HOH . J 5 HOH B 3 503 2 HOH HOH . J 5 HOH B 4 504 14 HOH HOH . J 5 HOH B 5 505 4 HOH HOH . J 5 HOH B 6 506 45 HOH HOH . J 5 HOH B 7 507 12 HOH HOH . J 5 HOH B 8 508 6 HOH HOH . J 5 HOH B 9 509 24 HOH HOH . J 5 HOH B 10 510 29 HOH HOH . J 5 HOH B 11 511 41 HOH HOH . J 5 HOH B 12 512 44 HOH HOH . J 5 HOH B 13 513 9 HOH HOH . J 5 HOH B 14 514 36 HOH HOH . J 5 HOH B 15 515 33 HOH HOH . J 5 HOH B 16 516 19 HOH HOH . J 5 HOH B 17 517 17 HOH HOH . J 5 HOH B 18 518 40 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . D 3 -6.559 -8.26 10.512 1 59.87 ? N1 FMN 502 A 1 HETATM 2 C C2 FMN . . . D 3 -5.693 -8.058 11.491 1 63.29 ? C2 FMN 502 A 1 HETATM 3 O O2 FMN . . . D 3 -4.539 -8.316 11.304 1 68.54 ? O2 FMN 502 A 1 HETATM 4 N N3 FMN . . . D 3 -6.047 -7.561 12.671 1 61.33 ? N3 FMN 502 A 1 HETATM 5 C C4 FMN . . . D 3 -7.303 -7.253 12.871 1 59.96 ? C4 FMN 502 A 1 HETATM 6 O O4 FMN . . . D 3 -7.533 -6.811 13.952 1 56.01 ? O4 FMN 502 A 1 HETATM 7 C C4A FMN . . . D 3 -8.235 -7.449 11.871 1 58.95 ? C4A FMN 502 A 1 HETATM 8 N N5 FMN . . . D 3 -9.498 -7.155 12.024 1 58.53 ? N5 FMN 502 A 1 HETATM 9 C C5A FMN . . . D 3 -10.305 -7.124 10.986 1 56.1 ? C5A FMN 502 A 1 HETATM 10 C C6 FMN . . . D 3 -11.54 -6.592 11.129 1 49.54 ? C6 FMN 502 A 1 HETATM 11 C C7 FMN . . . D 3 -12.394 -6.589 10.072 1 53.49 ? C7 FMN 502 A 1 HETATM 12 C C7M FMN . . . D 3 -13.634 -6.054 10.217 1 47.43 ? C7M FMN 502 A 1 HETATM 13 C C8 FMN . . . D 3 -12.011 -7.112 8.883 1 51.45 ? C8 FMN 502 A 1 HETATM 14 C C8M FMN . . . D 3 -12.858 -7.085 7.842 1 43.47 ? C8M FMN 502 A 1 HETATM 15 C C9 FMN . . . D 3 -10.771 -7.637 8.746 1 51.07 ? C9 FMN 502 A 1 HETATM 16 C C9A FMN . . . D 3 -9.913 -7.662 9.794 1 56.96 ? C9A FMN 502 A 1 HETATM 17 N N10 FMN . . . D 3 -8.69 -8.172 9.672 1 59.87 ? N10 FMN 502 A 1 HETATM 18 C C10 FMN . . . D 3 -7.841 -7.982 10.677 1 60.6 ? C10 FMN 502 A 1 HETATM 19 C C1' FMN . . . D 3 -8.186 -8.72 8.395 1 52.4 ? C1' FMN 502 A 1 HETATM 20 C C2' FMN . . . D 3 -8.751 -10.037 7.94 1 54.18 ? C2' FMN 502 A 1 HETATM 21 O O2' FMN . . . D 3 -8.165 -11.008 8.716 1 51.8 ? O2' FMN 502 A 1 HETATM 22 C C3' FMN . . . D 3 -8.491 -10.183 6.456 1 53.22 ? C3' FMN 502 A 1 HETATM 23 O O3' FMN . . . D 3 -9.292 -9.263 5.887 1 55 ? O3' FMN 502 A 1 HETATM 24 C C4' FMN . . . D 3 -9.015 -11.441 5.848 1 54.82 ? C4' FMN 502 A 1 HETATM 25 O O4' FMN . . . D 3 -8.449 -12.535 6.489 1 53.03 ? O4' FMN 502 A 1 HETATM 26 C C5' FMN . . . D 3 -8.776 -11.546 4.338 1 51.15 ? C5' FMN 502 A 1 HETATM 27 O O5' FMN . . . D 3 -7.527 -11.249 3.897 1 53.66 ? O5' FMN 502 A 1 HETATM 28 P P FMN . . . D 3 -7.344 -10.254 3.008 1 64.36 ? P FMN 502 A 1 HETATM 29 O O1P FMN . . . D 3 -7.799 -10.787 1.843 1 61.37 ? O1P FMN 502 A 1 HETATM 30 O O2P FMN . . . D 3 -8.065 -9.178 3.423 1 57.68 ? O2P FMN 502 A 1 HETATM 31 O O3P FMN . . . D 3 -5.997 -10.004 3.086 1 55.44 ? O3P FMN 502 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 70 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 343 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 31 #