data_7T3A # _model_server_result.job_id IjEDd8WUNrDH-bjZItv6fA _model_server_result.datetime_utc '2024-10-18 16:31:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7t3a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":500}' # _entry.id 7T3A # _exptl.entry_id 7T3A _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 522.196 _entity.id 11 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7T3A _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7T3A _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details decameric _pdbx_struct_assembly.oligomeric_count 10 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 11 _struct_asym.id K _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 124 K CYS 124 1_555 D SG CYS 159 K CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? covale ? covale1 D CB ALA 41 K ALA 41 1_555 K O2G GNP . K GNP 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale2 D NZ LYS 128 K LYS 128 1_555 K C8 GNP . K GNP 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? # _chem_comp.formula 'C10 H17 N6 O13 P3' _chem_comp.formula_weight 522.196 _chem_comp.id GNP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7T3A _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id K _pdbx_nonpoly_scheme.entity_id 11 _pdbx_nonpoly_scheme.mon_id GNP _pdbx_nonpoly_scheme.pdb_strand_id K _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 500 _pdbx_nonpoly_scheme.auth_seq_num 500 _pdbx_nonpoly_scheme.pdb_mon_id GNP _pdbx_nonpoly_scheme.auth_mon_id GNP _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GNP . . . K 11 120.619 134.444 162.07 1 118.04 ? PG GNP 500 K 1 HETATM 2 O O1G GNP . . . K 11 121.115 133.107 162.536 1 118.04 ? O1G GNP 500 K 1 HETATM 3 O O2G GNP . . . K 11 121.562 135.019 161.011 1 118.04 ? O2G GNP 500 K 1 HETATM 4 O O3G GNP . . . K 11 119.187 134.303 161.492 1 118.04 ? O3G GNP 500 K 1 HETATM 5 N N3B GNP . . . K 11 120.556 135.461 163.434 1 118.04 ? N3B GNP 500 K 1 HETATM 6 P PB GNP . . . K 11 121.774 135.388 164.516 1 118.04 ? PB GNP 500 K 1 HETATM 7 O O1B GNP . . . K 11 123.026 134.924 163.832 1 118.04 ? O1B GNP 500 K 1 HETATM 8 O O2B GNP . . . K 11 121.429 134.38 165.573 1 118.04 ? O2B GNP 500 K 1 HETATM 9 O O3A GNP . . . K 11 121.982 136.883 165.146 1 118.04 ? O3A GNP 500 K 1 HETATM 10 P PA GNP . . . K 11 121.415 137.301 166.56 1 118.04 ? PA GNP 500 K 1 HETATM 11 O O1A GNP . . . K 11 122.56 137.109 167.549 1 118.04 ? O1A GNP 500 K 1 HETATM 12 O O2A GNP . . . K 11 120.17 136.595 166.878 1 118.04 ? O2A GNP 500 K 1 HETATM 13 O O5' GNP . . . K 11 121.05 138.817 166.375 1 118.04 ? O5' GNP 500 K 1 HETATM 14 C C5' GNP . . . K 11 119.676 139.237 166.247 1 118.04 ? C5' GNP 500 K 1 HETATM 15 C C4' GNP . . . K 11 119.568 140.729 166.427 1 118.04 ? C4' GNP 500 K 1 HETATM 16 O O4' GNP . . . K 11 118.566 141.029 167.417 1 118.04 ? O4' GNP 500 K 1 HETATM 17 C C3' GNP . . . K 11 120.816 141.424 166.945 1 118.04 ? C3' GNP 500 K 1 HETATM 18 O O3' GNP . . . K 11 121.715 141.676 165.874 1 118.04 ? O3' GNP 500 K 1 HETATM 19 C C2' GNP . . . K 11 120.244 142.722 167.515 1 118.04 ? C2' GNP 500 K 1 HETATM 20 O O2' GNP . . . K 11 120.105 143.714 166.508 1 118.04 ? O2' GNP 500 K 1 HETATM 21 C C1' GNP . . . K 11 118.862 142.281 168.017 1 118.04 ? C1' GNP 500 K 1 HETATM 22 N N9 GNP . . . K 11 118.803 142.121 169.476 1 118.04 ? N9 GNP 500 K 1 HETATM 23 C C8 GNP . . . K 11 119.08 140.988 170.185 1 118.04 ? C8 GNP 500 K 1 HETATM 24 N N7 GNP . . . K 11 118.978 141.157 171.48 1 118.04 ? N7 GNP 500 K 1 HETATM 25 C C5 GNP . . . K 11 118.564 142.468 171.623 1 118.04 ? C5 GNP 500 K 1 HETATM 26 C C6 GNP . . . K 11 118.223 143.228 172.801 1 118.04 ? C6 GNP 500 K 1 HETATM 27 O O6 GNP . . . K 11 118.257 142.854 173.967 1 118.04 ? O6 GNP 500 K 1 HETATM 28 N N1 GNP . . . K 11 117.843 144.518 172.489 1 118.04 ? N1 GNP 500 K 1 HETATM 29 C C2 GNP . . . K 11 117.774 145.031 171.223 1 118.04 ? C2 GNP 500 K 1 HETATM 30 N N2 GNP . . . K 11 117.382 146.298 171.108 1 118.04 ? N2 GNP 500 K 1 HETATM 31 N N3 GNP . . . K 11 118.07 144.332 170.129 1 118.04 ? N3 GNP 500 K 1 HETATM 32 C C4 GNP . . . K 11 118.455 143.073 170.401 1 118.04 ? C4 GNP 500 K 1 # _model_server_stats.io_time_ms 77 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 259 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 32 #