data_7T3D # _model_server_result.job_id cdWk85M1GirsWsvd-bxo1Q _model_server_result.datetime_utc '2024-11-30 03:13:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7t3d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":401}' # _entry.id 7T3D # _exptl.entry_id 7T3D _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 15 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octadecameric _pdbx_struct_assembly.oligomeric_count 18 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 V N N ? 8 W N N ? 8 X N N ? 8 Y N N ? 8 Z N N ? 8 AA N N ? 8 BA N N ? 8 CA N N ? 8 DA N N ? 8 EA N N ? 8 FA N N ? 8 GA N N ? 8 HA N N ? 8 IA N N ? 8 JA N N # _pdbx_entity_branch.entity_id 7 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 7 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 7 n S NAG 1 S 1 NAG A 328 NAG 7 n S NAG 2 S 2 NAG A 329 NAG 7 n T NAG 1 T 1 NAG E 328 NAG 7 n T NAG 2 T 2 NAG E 329 NAG 7 n U NAG 1 U 1 NAG F 328 NAG 7 n U NAG 2 U 2 NAG F 329 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 8 A CYS 14 1_555 B SG CYS 137 B CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 46 A CYS 52 1_555 A SG CYS 279 A CYS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf3 A SG CYS 59 A CYS 64 1_555 A SG CYS 71 A CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf4 A SG CYS 94 A CYS 97 1_555 A SG CYS 140 A CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf5 A SG CYS 283 A CYS 281 1_555 A SG CYS 307 A CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf6 B SG CYS 144 B CYS 144 1_555 B SG CYS 148 B CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf7 C SG CYS 23 D CYS 23 1_555 C SG CYS 88 D CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf8 D SG CYS 21 C CYS 22 1_555 D SG CYS 95 C CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf9 E SG CYS 22 H CYS 22 1_555 E SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf10 F SG CYS 23 L CYS 23 1_555 F SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf11 G SG CYS 8 E CYS 14 1_555 H SG CYS 137 G CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf12 G SG CYS 46 E CYS 52 1_555 G SG CYS 279 E CYS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf13 G SG CYS 59 E CYS 64 1_555 G SG CYS 71 E CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf14 G SG CYS 94 E CYS 97 1_555 G SG CYS 140 E CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf15 G SG CYS 283 E CYS 281 1_555 G SG CYS 307 E CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf16 H SG CYS 144 G CYS 144 1_555 H SG CYS 148 G CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf17 I SG CYS 23 M CYS 23 1_555 I SG CYS 88 M CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf18 J SG CYS 21 J CYS 22 1_555 J SG CYS 95 J CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf19 K SG CYS 22 O CYS 22 1_555 K SG CYS 96 O CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf20 L SG CYS 23 Q CYS 23 1_555 L SG CYS 88 Q CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf21 M SG CYS 8 F CYS 14 1_555 N SG CYS 137 I CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf22 M SG CYS 46 F CYS 52 1_555 M SG CYS 279 F CYS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf23 M SG CYS 59 F CYS 64 1_555 M SG CYS 71 F CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf24 M SG CYS 94 F CYS 97 1_555 M SG CYS 140 F CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf25 M SG CYS 283 F CYS 281 1_555 M SG CYS 307 F CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf26 N SG CYS 144 I CYS 144 1_555 N SG CYS 148 I CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf27 O SG CYS 23 N CYS 23 1_555 O SG CYS 88 N CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf28 P SG CYS 21 K CYS 22 1_555 P SG CYS 95 K CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf29 Q SG CYS 22 P CYS 22 1_555 Q SG CYS 96 P CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf30 R SG CYS 23 R CYS 23 1_555 R SG CYS 88 R CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? covale ? covale1 A ND2 ASN 15 A ASN 21 1_555 V C1 NAG . A NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.528 ? covale ? covale2 A ND2 ASN 27 A ASN 33 1_555 W C1 NAG . A NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.523 ? covale ? covale3 A ND2 ASN 91 A ASN 94 1_555 S C1 NAG . S NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.517 ? covale ? covale4 A ND2 ASN 280 A ASN 278 1_555 X C1 NAG . A NAG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.522 ? covale ? covale5 A ND2 ASN 291 A ASN 289 1_555 Y C1 NAG . A NAG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.522 ? covale ? covale6 B ND2 ASN 154 B ASN 154 1_555 Z C1 NAG . B NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.507 ? covale ? covale7 G ND2 ASN 15 E ASN 21 1_555 AA C1 NAG . E NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.528 ? covale ? covale8 G ND2 ASN 27 E ASN 33 1_555 BA C1 NAG . E NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.524 ? covale ? covale9 G ND2 ASN 91 E ASN 94 1_555 T C1 NAG . T NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.517 ? covale ? covale10 G ND2 ASN 280 E ASN 278 1_555 CA C1 NAG . E NAG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.522 ? covale ? covale11 G ND2 ASN 291 E ASN 289 1_555 DA C1 NAG . E NAG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.522 ? covale ? covale12 H ND2 ASN 154 G ASN 154 1_555 EA C1 NAG . G NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.507 ? covale ? covale13 M ND2 ASN 15 F ASN 21 1_555 FA C1 NAG . F NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.528 ? covale ? covale14 M ND2 ASN 27 F ASN 33 1_555 GA C1 NAG . F NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.523 ? covale ? covale15 M ND2 ASN 91 F ASN 94 1_555 U C1 NAG . U NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.517 ? covale ? covale16 M ND2 ASN 280 F ASN 278 1_555 HA C1 NAG . F NAG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.522 ? covale ? covale17 M ND2 ASN 291 F ASN 289 1_555 IA C1 NAG . F NAG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.522 ? covale ? covale18 N ND2 ASN 154 I ASN 154 1_555 JA C1 NAG . I NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.507 ? covale ? covale19 S O4 NAG . S NAG 1 1_555 S C1 NAG . S NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.519 ? covale ? covale20 T O4 NAG . T NAG 1 1_555 T C1 NAG . T NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.52 ? covale ? covale21 U O4 NAG . U NAG 1 1_555 U C1 NAG . U NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.52 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 235 n n C1 O1 NAG sing 236 n n C1 O5 NAG sing 237 n n C1 H1 NAG sing 238 n n C2 C3 NAG sing 239 n n C2 N2 NAG sing 240 n n C2 H2 NAG sing 241 n n C3 C4 NAG sing 242 n n C3 O3 NAG sing 243 n n C3 H3 NAG sing 244 n n C4 C5 NAG sing 245 n n C4 O4 NAG sing 246 n n C4 H4 NAG sing 247 n n C5 C6 NAG sing 248 n n C5 O5 NAG sing 249 n n C5 H5 NAG sing 250 n n C6 O6 NAG sing 251 n n C6 H61 NAG sing 252 n n C6 H62 NAG sing 253 n n C7 C8 NAG sing 254 n n C7 N2 NAG sing 255 n n C7 O7 NAG doub 256 n n C8 H81 NAG sing 257 n n C8 H82 NAG sing 258 n n C8 H83 NAG sing 259 n n N2 HN2 NAG sing 260 n n O1 HO1 NAG sing 261 n n O3 HO3 NAG sing 262 n n O4 HO4 NAG sing 263 n n O6 HO6 NAG sing 264 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7T3D _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code V 8 NAG A 1 401 326 NAG NAG . W 8 NAG A 1 402 327 NAG NAG . X 8 NAG A 1 403 330 NAG NAG . Y 8 NAG A 1 404 331 NAG NAG . Z 8 NAG B 1 201 172 NAG NAG . AA 8 NAG E 1 401 326 NAG NAG . BA 8 NAG E 1 402 327 NAG NAG . CA 8 NAG E 1 403 330 NAG NAG . DA 8 NAG E 1 404 331 NAG NAG . EA 8 NAG G 1 201 172 NAG NAG . FA 8 NAG F 1 401 326 NAG NAG . GA 8 NAG F 1 402 327 NAG NAG . HA 8 NAG F 1 403 330 NAG NAG . IA 8 NAG F 1 404 331 NAG NAG . JA 8 NAG I 1 201 172 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . V 8 161.419 207.357 205.648 1 73.25 ? C1 NAG 401 A 1 HETATM 2 C C2 NAG . . . V 8 160.911 207.35 204.134 1 68.5 ? C2 NAG 401 A 1 HETATM 3 C C3 NAG . . . V 8 161.309 208.71 203.466 1 77.79 ? C3 NAG 401 A 1 HETATM 4 C C4 NAG . . . V 8 160.676 209.897 204.265 1 75.05 ? C4 NAG 401 A 1 HETATM 5 C C5 NAG . . . V 8 161.171 209.837 205.754 1 78.65 ? C5 NAG 401 A 1 HETATM 6 C C6 NAG . . . V 8 160.522 210.907 206.638 1 76.09 ? C6 NAG 401 A 1 HETATM 7 C C7 NAG . . . V 8 160.945 205.104 203.054 1 76.16 ? C7 NAG 401 A 1 HETATM 8 C C8 NAG . . . V 8 161.73 204.02 202.378 1 66.5 ? C8 NAG 401 A 1 HETATM 9 N N2 NAG . . . V 8 161.579 206.224 203.435 1 76.4 ? N2 NAG 401 A 1 HETATM 10 O O3 NAG . . . V 8 160.821 208.731 202.111 1 76.18 ? O3 NAG 401 A 1 HETATM 11 O O4 NAG . . . V 8 161.083 211.132 203.67 1 75.34 ? O4 NAG 401 A 1 HETATM 12 O O5 NAG . . . V 8 160.817 208.51 206.343 1 75.03 ? O5 NAG 401 A 1 HETATM 13 O O6 NAG . . . V 8 161.112 210.95 207.934 1 71.57 ? O6 NAG 401 A 1 HETATM 14 O O7 NAG . . . V 8 159.729 204.944 203.251 1 64.48 ? O7 NAG 401 A 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 40 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #