data_7T3P # _model_server_result.job_id 4zgkGftgxF0-EQytN--R9Q _model_server_result.datetime_utc '2024-10-19 03:55:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7t3p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":2702}' # _entry.id 7T3P # _exptl.entry_id 7T3P _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 420.096 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description D-MYO-INOSITOL-1,4,5-TRIPHOSPHATE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7T3P _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7T3P _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 I N N ? 3 L N N ? 3 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 2455 A CYS 2455 1_555 A SG CYS 2461 A CYS 2461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 B SG CYS 2455 B CYS 2455 1_555 B SG CYS 2461 B CYS 2461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 C SG CYS 2455 C CYS 2455 1_555 C SG CYS 2461 C CYS 2461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 D SG CYS 2455 D CYS 2455 1_555 D SG CYS 2461 D CYS 2461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc1 A SG CYS 2538 A CYS 2538 1_555 E ZN ZN . A ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc2 A SG CYS 2541 A CYS 2541 1_555 E ZN ZN . A ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc3 A NE2 HIS 2558 A HIS 2558 1_555 E ZN ZN . A ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc4 A ND1 HIS 2563 A HIS 2563 1_555 E ZN ZN . A ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc5 B SG CYS 2538 B CYS 2538 1_555 H ZN ZN . B ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc6 B SG CYS 2541 B CYS 2541 1_555 H ZN ZN . B ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc7 B NE2 HIS 2558 B HIS 2558 1_555 H ZN ZN . B ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc8 B ND1 HIS 2563 B HIS 2563 1_555 H ZN ZN . B ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc9 C SG CYS 2538 C CYS 2538 1_555 K ZN ZN . C ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc10 C SG CYS 2541 C CYS 2541 1_555 K ZN ZN . C ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc11 C NE2 HIS 2558 C HIS 2558 1_555 K ZN ZN . C ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc12 C ND1 HIS 2563 C HIS 2563 1_555 K ZN ZN . C ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc13 D SG CYS 2538 D CYS 2538 1_555 N ZN ZN . D ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc14 D SG CYS 2541 D CYS 2541 1_555 N ZN ZN . D ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc15 D NE2 HIS 2558 D HIS 2558 1_555 N ZN ZN . D ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc16 D ND1 HIS 2563 D HIS 2563 1_555 N ZN ZN . D ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? # _chem_comp.formula 'C6 H15 O15 P3' _chem_comp.formula_weight 420.096 _chem_comp.id I3P _chem_comp.mon_nstd_flag . _chem_comp.name D-MYO-INOSITOL-1,4,5-TRIPHOSPHATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7T3P _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ZN A 1 2701 4000 ZN ZN . F 3 I3P A 1 2702 4201 I3P I3P . G 4 ATP A 1 2703 4301 ATP ATP . H 2 ZN B 1 2701 4000 ZN ZN . I 3 I3P B 1 2702 4201 I3P I3P . J 4 ATP B 1 2703 4301 ATP ATP . K 2 ZN C 1 2701 4000 ZN ZN . L 3 I3P C 1 2702 4201 I3P I3P . M 4 ATP C 1 2703 4301 ATP ATP . N 2 ZN D 1 2701 4000 ZN ZN . O 3 I3P D 1 2702 4201 I3P I3P . P 4 ATP D 1 2703 4301 ATP ATP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 I3P . . . O 3 183.888 259.209 158.294 1 43.79 ? C1 I3P 2702 D 1 HETATM 2 C C2 I3P . . . O 3 185.309 258.727 158.003 1 43.79 ? C2 I3P 2702 D 1 HETATM 3 C C3 I3P . . . O 3 185.474 258.474 156.508 1 43.79 ? C3 I3P 2702 D 1 HETATM 4 C C4 I3P . . . O 3 184.623 257.283 156.063 1 43.79 ? C4 I3P 2702 D 1 HETATM 5 C C5 I3P . . . O 3 183.367 257.121 156.93 1 43.79 ? C5 I3P 2702 D 1 HETATM 6 C C6 I3P . . . O 3 182.847 258.461 157.452 1 43.79 ? C6 I3P 2702 D 1 HETATM 7 O O1 I3P . . . O 3 183.818 260.573 157.978 1 43.79 ? O1 I3P 2702 D 1 HETATM 8 O O2 I3P . . . O 3 186.229 259.71 158.408 1 43.79 ? O2 I3P 2702 D 1 HETATM 9 O O3 I3P . . . O 3 185.059 259.626 155.818 1 43.79 ? O3 I3P 2702 D 1 HETATM 10 O O4 I3P . . . O 3 185.412 256.127 156.175 1 43.79 ? O4 I3P 2702 D 1 HETATM 11 O O5 I3P . . . O 3 182.347 256.533 156.165 1 43.79 ? O5 I3P 2702 D 1 HETATM 12 O O6 I3P . . . O 3 181.714 258.217 158.246 1 43.79 ? O6 I3P 2702 D 1 HETATM 13 P P1 I3P . . . O 3 183.27 261.617 159.122 1 43.79 ? P1 I3P 2702 D 1 HETATM 14 O O11 I3P . . . O 3 183.731 263.011 158.782 1 43.79 ? O11 I3P 2702 D 1 HETATM 15 O O12 I3P . . . O 3 181.763 261.574 159.162 1 43.79 ? O12 I3P 2702 D 1 HETATM 16 O O13 I3P . . . O 3 183.818 261.216 160.468 1 43.79 ? O13 I3P 2702 D 1 HETATM 17 P P4 I3P . . . O 3 185.827 255.283 154.826 1 43.79 ? P4 I3P 2702 D 1 HETATM 18 O O41 I3P . . . O 3 185.475 256.059 153.584 1 43.79 ? O41 I3P 2702 D 1 HETATM 19 O O42 I3P . . . O 3 187.311 255.024 154.839 1 43.79 ? O42 I3P 2702 D 1 HETATM 20 O O43 I3P . . . O 3 185.092 253.971 154.815 1 43.79 ? O43 I3P 2702 D 1 HETATM 21 P P5 I3P . . . O 3 181.464 255.313 156.822 1 43.79 ? P5 I3P 2702 D 1 HETATM 22 O O51 I3P . . . O 3 180.751 254.568 155.727 1 43.79 ? O51 I3P 2702 D 1 HETATM 23 O O52 I3P . . . O 3 182.38 254.371 157.556 1 43.79 ? O52 I3P 2702 D 1 HETATM 24 O O53 I3P . . . O 3 180.452 255.877 157.782 1 43.79 ? O53 I3P 2702 D 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 97 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 24 #