data_7T3P # _model_server_result.job_id UrMJe3ir0TyNBPKVzi4AnQ _model_server_result.datetime_utc '2024-10-19 03:42:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7t3p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":2703}' # _entry.id 7T3P # _exptl.entry_id 7T3P _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7T3P _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7T3P _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 J N N ? 4 M N N ? 4 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 2455 A CYS 2455 1_555 A SG CYS 2461 A CYS 2461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 B SG CYS 2455 B CYS 2455 1_555 B SG CYS 2461 B CYS 2461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 C SG CYS 2455 C CYS 2455 1_555 C SG CYS 2461 C CYS 2461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 D SG CYS 2455 D CYS 2455 1_555 D SG CYS 2461 D CYS 2461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc1 A SG CYS 2538 A CYS 2538 1_555 E ZN ZN . A ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc2 A SG CYS 2541 A CYS 2541 1_555 E ZN ZN . A ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc3 A NE2 HIS 2558 A HIS 2558 1_555 E ZN ZN . A ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc4 A ND1 HIS 2563 A HIS 2563 1_555 E ZN ZN . A ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc5 B SG CYS 2538 B CYS 2538 1_555 H ZN ZN . B ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc6 B SG CYS 2541 B CYS 2541 1_555 H ZN ZN . B ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc7 B NE2 HIS 2558 B HIS 2558 1_555 H ZN ZN . B ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc8 B ND1 HIS 2563 B HIS 2563 1_555 H ZN ZN . B ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc9 C SG CYS 2538 C CYS 2538 1_555 K ZN ZN . C ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc10 C SG CYS 2541 C CYS 2541 1_555 K ZN ZN . C ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc11 C NE2 HIS 2558 C HIS 2558 1_555 K ZN ZN . C ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc12 C ND1 HIS 2563 C HIS 2563 1_555 K ZN ZN . C ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc13 D SG CYS 2538 D CYS 2538 1_555 N ZN ZN . D ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc14 D SG CYS 2541 D CYS 2541 1_555 N ZN ZN . D ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc15 D NE2 HIS 2558 D HIS 2558 1_555 N ZN ZN . D ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc16 D ND1 HIS 2563 D HIS 2563 1_555 N ZN ZN . D ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7T3P _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ZN A 1 2701 4000 ZN ZN . F 3 I3P A 1 2702 4201 I3P I3P . G 4 ATP A 1 2703 4301 ATP ATP . H 2 ZN B 1 2701 4000 ZN ZN . I 3 I3P B 1 2702 4201 I3P I3P . J 4 ATP B 1 2703 4301 ATP ATP . K 2 ZN C 1 2701 4000 ZN ZN . L 3 I3P C 1 2702 4201 I3P I3P . M 4 ATP C 1 2703 4301 ATP ATP . N 2 ZN D 1 2701 4000 ZN ZN . O 3 I3P D 1 2702 4201 I3P I3P . P 4 ATP D 1 2703 4301 ATP ATP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . P 4 218.943 221.699 232.078 1 34.85 ? PG ATP 2703 D 1 HETATM 2 O O1G ATP . . . P 4 218.593 220.783 233.199 1 34.85 ? O1G ATP 2703 D 1 HETATM 3 O O2G ATP . . . P 4 218.09 221.494 230.824 1 34.85 ? O2G ATP 2703 D 1 HETATM 4 O O3G ATP . . . P 4 220.422 221.654 231.684 1 34.85 ? O3G ATP 2703 D 1 HETATM 5 P PB ATP . . . P 4 218.733 224.671 231.861 1 34.85 ? PB ATP 2703 D 1 HETATM 6 O O1B ATP . . . P 4 220.079 225.014 231.364 1 34.85 ? O1B ATP 2703 D 1 HETATM 7 O O2B ATP . . . P 4 218.138 225.63 232.889 1 34.85 ? O2B ATP 2703 D 1 HETATM 8 O O3B ATP . . . P 4 218.686 223.218 232.493 1 34.85 ? O3B ATP 2703 D 1 HETATM 9 P PA ATP . . . P 4 216.11 224.549 230.511 1 34.85 ? PA ATP 2703 D 1 HETATM 10 O O1A ATP . . . P 4 215.714 224.212 229.13 1 34.85 ? O1A ATP 2703 D 1 HETATM 11 O O2A ATP . . . P 4 215.615 225.895 231.02 1 34.85 ? O2A ATP 2703 D 1 HETATM 12 O O3A ATP . . . P 4 217.684 224.543 230.67 1 34.85 ? O3A ATP 2703 D 1 HETATM 13 O O5' ATP . . . P 4 215.65 223.431 231.525 1 34.85 ? O5' ATP 2703 D 1 HETATM 14 C C5' ATP . . . P 4 214.263 223.27 231.886 1 34.85 ? C5' ATP 2703 D 1 HETATM 15 C C4' ATP . . . P 4 214.114 222.058 232.768 1 34.85 ? C4' ATP 2703 D 1 HETATM 16 O O4' ATP . . . P 4 212.843 221.456 232.433 1 34.85 ? O4' ATP 2703 D 1 HETATM 17 C C3' ATP . . . P 4 215.123 220.982 232.391 1 34.85 ? C3' ATP 2703 D 1 HETATM 18 O O3' ATP . . . P 4 215.002 219.98 233.39 1 34.85 ? O3' ATP 2703 D 1 HETATM 19 C C2' ATP . . . P 4 214.475 220.39 231.147 1 34.85 ? C2' ATP 2703 D 1 HETATM 20 O O2' ATP . . . P 4 214.92 219.045 231.065 1 34.85 ? O2' ATP 2703 D 1 HETATM 21 C C1' ATP . . . P 4 213.035 220.297 231.64 1 34.85 ? C1' ATP 2703 D 1 HETATM 22 N N9 ATP . . . P 4 212.093 220.38 230.534 1 34.85 ? N9 ATP 2703 D 1 HETATM 23 C C8 ATP . . . P 4 211.98 221.39 229.621 1 34.85 ? C8 ATP 2703 D 1 HETATM 24 N N7 ATP . . . P 4 211.053 221.193 228.718 1 34.85 ? N7 ATP 2703 D 1 HETATM 25 C C5 ATP . . . P 4 210.515 219.965 229.065 1 34.85 ? C5 ATP 2703 D 1 HETATM 26 C C6 ATP . . . P 4 209.489 219.186 228.502 1 34.85 ? C6 ATP 2703 D 1 HETATM 27 N N6 ATP . . . P 4 208.786 219.547 227.426 1 34.85 ? N6 ATP 2703 D 1 HETATM 28 N N1 ATP . . . P 4 209.207 218.007 229.088 1 34.85 ? N1 ATP 2703 D 1 HETATM 29 C C2 ATP . . . P 4 209.904 217.64 230.163 1 34.85 ? C2 ATP 2703 D 1 HETATM 30 N N3 ATP . . . P 4 210.892 218.287 230.779 1 34.85 ? N3 ATP 2703 D 1 HETATM 31 C C4 ATP . . . P 4 211.15 219.451 230.179 1 34.85 ? C4 ATP 2703 D 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 98 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #