data_7T3R # _model_server_result.job_id 1Xl7qRmUyYK2dDfbF-6n6w _model_server_result.datetime_utc '2024-10-19 03:49:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7t3r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":2703}' # _entry.id 7T3R # _exptl.entry_id 7T3R _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7T3R _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7T3R _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 J N N ? 4 M N N ? 4 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 2455 A CYS 2455 1_555 A SG CYS 2461 A CYS 2461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 B SG CYS 2455 B CYS 2455 1_555 B SG CYS 2461 B CYS 2461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 C SG CYS 2455 C CYS 2455 1_555 C SG CYS 2461 C CYS 2461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 D SG CYS 2455 D CYS 2455 1_555 D SG CYS 2461 D CYS 2461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc1 A SG CYS 2538 A CYS 2538 1_555 E ZN ZN . A ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc2 A SG CYS 2541 A CYS 2541 1_555 E ZN ZN . A ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc3 A NE2 HIS 2558 A HIS 2558 1_555 E ZN ZN . A ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc4 A ND1 HIS 2563 A HIS 2563 1_555 E ZN ZN . A ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc5 B SG CYS 2538 B CYS 2538 1_555 H ZN ZN . B ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc6 B SG CYS 2541 B CYS 2541 1_555 H ZN ZN . B ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc7 B NE2 HIS 2558 B HIS 2558 1_555 H ZN ZN . B ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc8 B ND1 HIS 2563 B HIS 2563 1_555 H ZN ZN . B ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc9 C SG CYS 2538 C CYS 2538 1_555 K ZN ZN . C ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc10 C SG CYS 2541 C CYS 2541 1_555 K ZN ZN . C ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc11 C NE2 HIS 2558 C HIS 2558 1_555 K ZN ZN . C ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc12 C ND1 HIS 2563 C HIS 2563 1_555 K ZN ZN . C ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc13 D SG CYS 2538 D CYS 2538 1_555 N ZN ZN . D ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc14 D SG CYS 2541 D CYS 2541 1_555 N ZN ZN . D ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc15 D NE2 HIS 2558 D HIS 2558 1_555 N ZN ZN . D ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc16 D ND1 HIS 2563 D HIS 2563 1_555 N ZN ZN . D ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 7T3R _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ZN A 1 2701 4000 ZN ZN . F 3 I3P A 1 2702 4201 I3P I3P . G 4 ATP A 1 2703 4301 ATP ATP . H 2 ZN B 1 2701 4000 ZN ZN . I 3 I3P B 1 2702 4201 I3P I3P . J 4 ATP B 1 2703 4301 ATP ATP . K 2 ZN C 1 2701 4000 ZN ZN . L 3 I3P C 1 2702 4201 I3P I3P . M 4 ATP C 1 2703 4301 ATP ATP . N 2 ZN D 1 2701 4000 ZN ZN . O 3 I3P D 1 2702 4201 I3P I3P . P 4 ATP D 1 2703 4301 ATP ATP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . P 4 219.096 223.62 232.849 1 55.79 ? PG ATP 2703 D 1 HETATM 2 O O1G ATP . . . P 4 219.124 222.533 233.868 1 55.79 ? O1G ATP 2703 D 1 HETATM 3 O O2G ATP . . . P 4 218.147 223.341 231.679 1 55.79 ? O2G ATP 2703 D 1 HETATM 4 O O3G ATP . . . P 4 220.477 223.982 232.294 1 55.79 ? O3G ATP 2703 D 1 HETATM 5 P PB ATP . . . P 4 218.369 226.509 233.113 1 55.79 ? PB ATP 2703 D 1 HETATM 6 O O1B ATP . . . P 4 219.663 227.185 232.901 1 55.79 ? O1B ATP 2703 D 1 HETATM 7 O O2B ATP . . . P 4 217.462 227.132 234.172 1 55.79 ? O2B ATP 2703 D 1 HETATM 8 O O3B ATP . . . P 4 218.553 224.977 233.49 1 55.79 ? O3B ATP 2703 D 1 HETATM 9 P PA ATP . . . P 4 216.081 225.917 231.335 1 55.79 ? PA ATP 2703 D 1 HETATM 10 O O1A ATP . . . P 4 216.142 225.03 230.156 1 55.79 ? O1A ATP 2703 D 1 HETATM 11 O O2A ATP . . . P 4 215.214 227.162 231.171 1 55.79 ? O2A ATP 2703 D 1 HETATM 12 O O3A ATP . . . P 4 217.527 226.411 231.766 1 55.79 ? O3A ATP 2703 D 1 HETATM 13 O O5' ATP . . . P 4 215.564 225.122 232.597 1 55.79 ? O5' ATP 2703 D 1 HETATM 14 C C5' ATP . . . P 4 214.188 224.701 232.701 1 55.79 ? C5' ATP 2703 D 1 HETATM 15 C C4' ATP . . . P 4 214.109 223.435 233.512 1 55.79 ? C4' ATP 2703 D 1 HETATM 16 O O4' ATP . . . P 4 212.919 222.74 233.077 1 55.79 ? O4' ATP 2703 D 1 HETATM 17 C C3' ATP . . . P 4 215.231 222.478 233.137 1 55.79 ? C3' ATP 2703 D 1 HETATM 18 O O3' ATP . . . P 4 215.162 221.418 234.081 1 55.79 ? O3' ATP 2703 D 1 HETATM 19 C C2' ATP . . . P 4 214.707 221.899 231.83 1 55.79 ? C2' ATP 2703 D 1 HETATM 20 O O2' ATP . . . P 4 215.258 220.595 231.72 1 55.79 ? O2' ATP 2703 D 1 HETATM 21 C C1' ATP . . . P 4 213.251 221.663 232.218 1 55.79 ? C1' ATP 2703 D 1 HETATM 22 N N9 ATP . . . P 4 212.373 221.764 231.062 1 55.79 ? N9 ATP 2703 D 1 HETATM 23 C C8 ATP . . . P 4 212.303 222.801 230.172 1 55.79 ? C8 ATP 2703 D 1 HETATM 24 N N7 ATP . . . P 4 211.426 222.626 229.216 1 55.79 ? N7 ATP 2703 D 1 HETATM 25 C C5 ATP . . . P 4 210.874 221.387 229.499 1 55.79 ? C5 ATP 2703 D 1 HETATM 26 C C6 ATP . . . P 4 209.881 220.623 228.86 1 55.79 ? C6 ATP 2703 D 1 HETATM 27 N N6 ATP . . . P 4 209.235 221.013 227.758 1 55.79 ? N6 ATP 2703 D 1 HETATM 28 N N1 ATP . . . P 4 209.569 219.426 229.397 1 55.79 ? N1 ATP 2703 D 1 HETATM 29 C C2 ATP . . . P 4 210.211 219.029 230.497 1 55.79 ? C2 ATP 2703 D 1 HETATM 30 N N3 ATP . . . P 4 211.162 219.661 231.185 1 55.79 ? N3 ATP 2703 D 1 HETATM 31 C C4 ATP . . . P 4 211.451 220.842 230.632 1 55.79 ? C4 ATP 2703 D 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 112 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #