data_7T3U # _model_server_result.job_id G6SH0dje3drJJ10Tp_hgig _model_server_result.datetime_utc '2024-10-19 03:40:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7t3u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":2702}' # _entry.id 7T3U # _exptl.entry_id 7T3U _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7T3U _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7T3U _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 J N N ? 4 M N N ? 4 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 2455 A CYS 2455 1_555 A SG CYS 2461 A CYS 2461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 B SG CYS 2455 B CYS 2455 1_555 B SG CYS 2461 B CYS 2461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 C SG CYS 2455 C CYS 2455 1_555 C SG CYS 2461 C CYS 2461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 D SG CYS 2455 D CYS 2455 1_555 D SG CYS 2461 D CYS 2461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc1 A OE2 GLU 1882 A GLU 1882 1_555 H CA CA . A CA 2704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.963 ? metalc ? metalc2 A OE2 GLU 1946 A GLU 1946 1_555 H CA CA . A CA 2704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc3 A SG CYS 2538 A CYS 2538 1_555 E ZN ZN . A ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc4 A SG CYS 2541 A CYS 2541 1_555 E ZN ZN . A ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc5 A NE2 HIS 2558 A HIS 2558 1_555 E ZN ZN . A ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc6 A ND1 HIS 2563 A HIS 2563 1_555 E ZN ZN . A ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc7 A O THR 2581 A THR 2581 1_555 H CA CA . A CA 2704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.752 ? metalc ? metalc8 B OE2 GLU 1882 B GLU 1882 1_555 K CA CA . B CA 2703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.629 ? metalc ? metalc9 B OE1 GLU 1946 B GLU 1946 1_555 K CA CA . B CA 2703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? metalc ? metalc10 B OE2 GLU 1946 B GLU 1946 1_555 K CA CA . B CA 2703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc11 B SG CYS 2538 B CYS 2538 1_555 I ZN ZN . B ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc12 B SG CYS 2541 B CYS 2541 1_555 I ZN ZN . B ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc13 B NE2 HIS 2558 B HIS 2558 1_555 I ZN ZN . B ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc14 B ND1 HIS 2563 B HIS 2563 1_555 I ZN ZN . B ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc15 B O THR 2581 B THR 2581 1_555 K CA CA . B CA 2703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc16 C OE1 GLU 1946 C GLU 1946 1_555 N CA CA . C CA 2703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.934 ? metalc ? metalc17 C OE2 GLU 1946 C GLU 1946 1_555 N CA CA . C CA 2703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc18 C SG CYS 2538 C CYS 2538 1_555 L ZN ZN . C ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc19 C SG CYS 2541 C CYS 2541 1_555 L ZN ZN . C ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc20 C NE2 HIS 2558 C HIS 2558 1_555 L ZN ZN . C ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc21 C ND1 HIS 2563 C HIS 2563 1_555 L ZN ZN . C ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc22 C O THR 2581 C THR 2581 1_555 N CA CA . C CA 2703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc23 D OE2 GLU 1882 D GLU 1882 1_555 R CA CA . D CA 2704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? metalc ? metalc24 D OE1 GLU 1946 D GLU 1946 1_555 R CA CA . D CA 2704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.028 ? metalc ? metalc25 D OE2 GLU 1946 D GLU 1946 1_555 R CA CA . D CA 2704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc26 D SG CYS 2538 D CYS 2538 1_555 O ZN ZN . D ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc27 D SG CYS 2541 D CYS 2541 1_555 O ZN ZN . D ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc28 D NE2 HIS 2558 D HIS 2558 1_555 O ZN ZN . D ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc29 D ND1 HIS 2563 D HIS 2563 1_555 O ZN ZN . D ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc30 D O THR 2581 D THR 2581 1_555 R CA CA . D CA 2704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7T3U _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ZN A 1 2701 4000 ZN ZN . F 3 I3P A 1 2702 4201 I3P I3P . G 4 ATP A 1 2703 4301 ATP ATP . H 5 CA A 1 2704 5001 CA CA . I 2 ZN B 1 2701 4000 ZN ZN . J 4 ATP B 1 2702 4301 ATP ATP . K 5 CA B 1 2703 5001 CA CA . L 2 ZN C 1 2701 4000 ZN ZN . M 4 ATP C 1 2702 4301 ATP ATP . N 5 CA C 1 2703 5001 CA CA . O 2 ZN D 1 2701 4000 ZN ZN . P 3 I3P D 1 2702 4201 I3P I3P . Q 4 ATP D 1 2703 4301 ATP ATP . R 5 CA D 1 2704 5001 CA CA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . J 4 178.631 175.682 227.601 1 41.33 ? PG ATP 2702 B 1 HETATM 2 O O1G ATP . . . J 4 179.591 176.486 228.41 1 41.33 ? O1G ATP 2702 B 1 HETATM 3 O O2G ATP . . . J 4 178.839 175.819 226.088 1 41.33 ? O2G ATP 2702 B 1 HETATM 4 O O3G ATP . . . J 4 177.163 175.96 227.934 1 41.33 ? O3G ATP 2702 B 1 HETATM 5 P PB ATP . . . J 4 179.28 172.793 227.148 1 41.33 ? PB ATP 2702 B 1 HETATM 6 O O1B ATP . . . J 4 178.29 172.353 226.144 1 41.33 ? O1B ATP 2702 B 1 HETATM 7 O O2B ATP . . . J 4 179.636 171.77 228.226 1 41.33 ? O2B ATP 2702 B 1 HETATM 8 O O3B ATP . . . J 4 178.821 174.121 227.893 1 41.33 ? O3B ATP 2702 B 1 HETATM 9 P PA ATP . . . J 4 182.168 172.815 226.505 1 41.33 ? PA ATP 2702 B 1 HETATM 10 O O1A ATP . . . J 4 182.582 172.197 225.229 1 41.33 ? O1A ATP 2702 B 1 HETATM 11 O O2A ATP . . . J 4 182.344 171.925 227.733 1 41.33 ? O2A ATP 2702 B 1 HETATM 12 O O3A ATP . . . J 4 180.643 173.261 226.471 1 41.33 ? O3A ATP 2702 B 1 HETATM 13 O O5' ATP . . . J 4 182.921 174.179 226.76 1 41.33 ? O5' ATP 2702 B 1 HETATM 14 C C5' ATP . . . J 4 184.136 174.232 227.537 1 41.33 ? C5' ATP 2702 B 1 HETATM 15 C C4' ATP . . . J 4 184.138 175.471 228.395 1 41.33 ? C4' ATP 2702 B 1 HETATM 16 O O4' ATP . . . J 4 185.451 176.06 228.262 1 41.33 ? O4' ATP 2702 B 1 HETATM 17 C C3' ATP . . . J 4 183.212 176.54 227.828 1 41.33 ? C3' ATP 2702 B 1 HETATM 18 O O3' ATP . . . J 4 183.152 177.559 228.817 1 41.33 ? O3' ATP 2702 B 1 HETATM 19 C C2' ATP . . . J 4 184.065 177.112 226.703 1 41.33 ? C2' ATP 2702 B 1 HETATM 20 O O2' ATP . . . J 4 183.652 178.461 226.547 1 41.33 ? O2' ATP 2702 B 1 HETATM 21 C C1' ATP . . . J 4 185.409 177.199 227.42 1 41.33 ? C1' ATP 2702 B 1 HETATM 22 N N9 ATP . . . J 4 186.521 177.072 226.487 1 41.33 ? N9 ATP 2702 B 1 HETATM 23 C C8 ATP . . . J 4 186.967 175.93 225.876 1 41.33 ? C8 ATP 2702 B 1 HETATM 24 N N7 ATP . . . J 4 187.99 176.114 225.078 1 41.33 ? N7 ATP 2702 B 1 HETATM 25 C C5 ATP . . . J 4 188.236 177.475 225.17 1 41.33 ? C5 ATP 2702 B 1 HETATM 26 C C6 ATP . . . J 4 189.194 178.31 224.565 1 41.33 ? C6 ATP 2702 B 1 HETATM 27 N N6 ATP . . . J 4 190.124 177.878 223.708 1 41.33 ? N6 ATP 2702 B 1 HETATM 28 N N1 ATP . . . J 4 189.163 179.626 224.871 1 41.33 ? N1 ATP 2702 B 1 HETATM 29 C C2 ATP . . . J 4 188.237 180.065 225.726 1 41.33 ? C2 ATP 2702 B 1 HETATM 30 N N3 ATP . . . J 4 187.285 179.374 226.355 1 41.33 ? N3 ATP 2702 B 1 HETATM 31 C C4 ATP . . . J 4 187.337 178.078 226.034 1 41.33 ? C4 ATP 2702 B 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 72 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 31 #