data_7T3U # _model_server_result.job_id wanY5TeMnA2QgfQkRmU30A _model_server_result.datetime_utc '2024-10-19 03:59:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7t3u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":2702}' # _entry.id 7T3U # _exptl.entry_id 7T3U _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 420.096 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description D-MYO-INOSITOL-1,4,5-TRIPHOSPHATE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7T3U _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7T3U _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 2455 A CYS 2455 1_555 A SG CYS 2461 A CYS 2461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 B SG CYS 2455 B CYS 2455 1_555 B SG CYS 2461 B CYS 2461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 C SG CYS 2455 C CYS 2455 1_555 C SG CYS 2461 C CYS 2461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 D SG CYS 2455 D CYS 2455 1_555 D SG CYS 2461 D CYS 2461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc1 A OE2 GLU 1882 A GLU 1882 1_555 H CA CA . A CA 2704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.963 ? metalc ? metalc2 A OE2 GLU 1946 A GLU 1946 1_555 H CA CA . A CA 2704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc3 A SG CYS 2538 A CYS 2538 1_555 E ZN ZN . A ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc4 A SG CYS 2541 A CYS 2541 1_555 E ZN ZN . A ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc5 A NE2 HIS 2558 A HIS 2558 1_555 E ZN ZN . A ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc6 A ND1 HIS 2563 A HIS 2563 1_555 E ZN ZN . A ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc7 A O THR 2581 A THR 2581 1_555 H CA CA . A CA 2704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.752 ? metalc ? metalc8 B OE2 GLU 1882 B GLU 1882 1_555 K CA CA . B CA 2703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.629 ? metalc ? metalc9 B OE1 GLU 1946 B GLU 1946 1_555 K CA CA . B CA 2703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? metalc ? metalc10 B OE2 GLU 1946 B GLU 1946 1_555 K CA CA . B CA 2703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc11 B SG CYS 2538 B CYS 2538 1_555 I ZN ZN . B ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc12 B SG CYS 2541 B CYS 2541 1_555 I ZN ZN . B ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc13 B NE2 HIS 2558 B HIS 2558 1_555 I ZN ZN . B ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc14 B ND1 HIS 2563 B HIS 2563 1_555 I ZN ZN . B ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc15 B O THR 2581 B THR 2581 1_555 K CA CA . B CA 2703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc16 C OE1 GLU 1946 C GLU 1946 1_555 N CA CA . C CA 2703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.934 ? metalc ? metalc17 C OE2 GLU 1946 C GLU 1946 1_555 N CA CA . C CA 2703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc18 C SG CYS 2538 C CYS 2538 1_555 L ZN ZN . C ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc19 C SG CYS 2541 C CYS 2541 1_555 L ZN ZN . C ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc20 C NE2 HIS 2558 C HIS 2558 1_555 L ZN ZN . C ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc21 C ND1 HIS 2563 C HIS 2563 1_555 L ZN ZN . C ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc22 C O THR 2581 C THR 2581 1_555 N CA CA . C CA 2703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc23 D OE2 GLU 1882 D GLU 1882 1_555 R CA CA . D CA 2704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? metalc ? metalc24 D OE1 GLU 1946 D GLU 1946 1_555 R CA CA . D CA 2704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.028 ? metalc ? metalc25 D OE2 GLU 1946 D GLU 1946 1_555 R CA CA . D CA 2704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc26 D SG CYS 2538 D CYS 2538 1_555 O ZN ZN . D ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc27 D SG CYS 2541 D CYS 2541 1_555 O ZN ZN . D ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc28 D NE2 HIS 2558 D HIS 2558 1_555 O ZN ZN . D ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc29 D ND1 HIS 2563 D HIS 2563 1_555 O ZN ZN . D ZN 2701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc30 D O THR 2581 D THR 2581 1_555 R CA CA . D CA 2704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? # _chem_comp.formula 'C6 H15 O15 P3' _chem_comp.formula_weight 420.096 _chem_comp.id I3P _chem_comp.mon_nstd_flag . _chem_comp.name D-MYO-INOSITOL-1,4,5-TRIPHOSPHATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7T3U _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ZN A 1 2701 4000 ZN ZN . F 3 I3P A 1 2702 4201 I3P I3P . G 4 ATP A 1 2703 4301 ATP ATP . H 5 CA A 1 2704 5001 CA CA . I 2 ZN B 1 2701 4000 ZN ZN . J 4 ATP B 1 2702 4301 ATP ATP . K 5 CA B 1 2703 5001 CA CA . L 2 ZN C 1 2701 4000 ZN ZN . M 4 ATP C 1 2702 4301 ATP ATP . N 5 CA C 1 2703 5001 CA CA . O 2 ZN D 1 2701 4000 ZN ZN . P 3 I3P D 1 2702 4201 I3P I3P . Q 4 ATP D 1 2703 4301 ATP ATP . R 5 CA D 1 2704 5001 CA CA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 I3P . . . P 3 178.786 269.466 168.786 1 196.25 ? C1 I3P 2702 D 1 HETATM 2 C C2 I3P . . . P 3 179.837 268.774 169.664 1 196.25 ? C2 I3P 2702 D 1 HETATM 3 C C3 I3P . . . P 3 180.785 267.879 168.855 1 196.25 ? C3 I3P 2702 D 1 HETATM 4 C C4 I3P . . . P 3 180.04 266.849 167.994 1 196.25 ? C4 I3P 2702 D 1 HETATM 5 C C5 I3P . . . P 3 178.52 267.05 168.016 1 196.25 ? C5 I3P 2702 D 1 HETATM 6 C C6 I3P . . . P 3 178.128 268.512 167.777 1 196.25 ? C6 I3P 2702 D 1 HETATM 7 O O1 I3P . . . P 3 179.408 270.51 168.08 1 196.25 ? O1 I3P 2702 D 1 HETATM 8 O O2 I3P . . . P 3 180.598 269.765 170.313 1 196.25 ? O2 I3P 2702 D 1 HETATM 9 O O3 I3P . . . P 3 181.565 268.692 168.013 1 196.25 ? O3 I3P 2702 D 1 HETATM 10 O O4 I3P . . . P 3 180.326 265.559 168.475 1 196.25 ? O4 I3P 2702 D 1 HETATM 11 O O5 I3P . . . P 3 177.949 266.252 167.008 1 196.25 ? O5 I3P 2702 D 1 HETATM 12 O O6 I3P . . . P 3 176.731 268.634 167.89 1 196.25 ? O6 I3P 2702 D 1 HETATM 13 P P1 I3P . . . P 3 179.052 272.057 168.519 1 196.25 ? P1 I3P 2702 D 1 HETATM 14 O O11 I3P . . . P 3 179.537 273.012 167.455 1 196.25 ? O11 I3P 2702 D 1 HETATM 15 O O12 I3P . . . P 3 177.556 272.197 168.675 1 196.25 ? O12 I3P 2702 D 1 HETATM 16 O O13 I3P . . . P 3 179.728 272.377 169.831 1 196.25 ? O13 I3P 2702 D 1 HETATM 17 P P4 I3P . . . P 3 181.498 264.682 167.718 1 196.25 ? P4 I3P 2702 D 1 HETATM 18 O O41 I3P . . . P 3 180.962 264.146 166.412 1 196.25 ? O41 I3P 2702 D 1 HETATM 19 O O42 I3P . . . P 3 182.693 265.565 167.449 1 196.25 ? O42 I3P 2702 D 1 HETATM 20 O O43 I3P . . . P 3 181.912 263.529 168.601 1 196.25 ? O43 I3P 2702 D 1 HETATM 21 P P5 I3P . . . P 3 176.393 265.739 167.19 1 196.25 ? P5 I3P 2702 D 1 HETATM 22 O O51 I3P . . . P 3 176.17 264.503 166.352 1 196.25 ? O51 I3P 2702 D 1 HETATM 23 O O52 I3P . . . P 3 176.133 265.417 168.643 1 196.25 ? O52 I3P 2702 D 1 HETATM 24 O O53 I3P . . . P 3 175.45 266.829 166.74 1 196.25 ? O53 I3P 2702 D 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 50 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 24 #