data_7T4D # _model_server_result.job_id J58lnnbLw8pLRPjU1zXRJA _model_server_result.datetime_utc '2024-10-20 20:37:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7t4d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 7T4D # _exptl.entry_id 7T4D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7T4D _cell.length_a 122.301 _cell.length_b 122.301 _cell.length_c 128.419 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7T4D _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_465 -x-1,-y+1,z -1 0 0 0 -1 0 0 0 1 -122.301 122.301 0 3 'crystal symmetry operation' 3_565 -y,x+1,z 0 -1 0 1 0 0 0 0 1 0 122.301 0 4 'crystal symmetry operation' 4_455 y-1,-x,z 0 1 0 -1 0 0 0 0 1 -122.301 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 222 n n C1 H11 MPD sing 223 n n C1 H12 MPD sing 224 n n C1 H13 MPD sing 225 n n C2 O2 MPD sing 226 n n C2 CM MPD sing 227 n n C2 C3 MPD sing 228 n n O2 HO2 MPD sing 229 n n CM HM1 MPD sing 230 n n CM HM2 MPD sing 231 n n CM HM3 MPD sing 232 n n C3 C4 MPD sing 233 n n C3 H31 MPD sing 234 n n C3 H32 MPD sing 235 n n C4 O4 MPD sing 236 n n C4 C5 MPD sing 237 n n C4 H4 MPD sing 238 n n O4 HO4 MPD sing 239 n n C5 H51 MPD sing 240 n n C5 H52 MPD sing 241 n n C5 H53 MPD sing 242 n n # _atom_sites.entry_id 7T4D _atom_sites.fract_transf_matrix[1][1] 0.008177 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008177 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007787 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MPD B 1 401 401 MPD MPD . D 2 MPD A 1 401 401 MPD MPD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . D 2 -24.792 45.332 -33.398 1 61.93 ? C1 MPD 401 A 1 HETATM 2 C C2 MPD . . . D 2 -24.439 44.451 -32.195 1 61.93 ? C2 MPD 401 A 1 HETATM 3 O O2 MPD . . . D 2 -23.075 44.767 -31.818 1 61.93 ? O2 MPD 401 A 1 HETATM 4 C CM MPD . . . D 2 -25.337 44.746 -30.994 1 61.93 ? CM MPD 401 A 1 HETATM 5 C C3 MPD . . . D 2 -24.496 42.955 -32.518 1 61.93 ? C3 MPD 401 A 1 HETATM 6 C C4 MPD . . . D 2 -25.846 42.53 -33.1 1 61.93 ? C4 MPD 401 A 1 HETATM 7 O O4 MPD . . . D 2 -25.727 42.326 -34.495 1 61.93 ? O4 MPD 401 A 1 HETATM 8 C C5 MPD . . . D 2 -26.405 41.261 -32.456 1 61.93 ? C5 MPD 401 A 1 HETATM 9 H H11 MPD . . . D 2 -25.018 44.701 -34.257 1 22.8 ? H11 MPD 401 A 1 HETATM 10 H H12 MPD . . . D 2 -23.948 45.98 -33.634 1 22.8 ? H12 MPD 401 A 1 HETATM 11 H H13 MPD . . . D 2 -25.663 45.943 -33.157 1 22.8 ? H13 MPD 401 A 1 HETATM 12 H HO2 MPD . . . D 2 -22.527 43.955 -31.861 1 22.8 ? HO2 MPD 401 A 1 HETATM 13 H HM1 MPD . . . D 2 -25.804 43.822 -30.654 1 22.8 ? HM1 MPD 401 A 1 HETATM 14 H HM2 MPD . . . D 2 -24.738 45.169 -30.188 1 22.8 ? HM2 MPD 401 A 1 HETATM 15 H HM3 MPD . . . D 2 -26.109 45.458 -31.285 1 22.8 ? HM3 MPD 401 A 1 HETATM 16 H H31 MPD . . . D 2 -23.708 42.714 -33.231 1 22.8 ? H31 MPD 401 A 1 HETATM 17 H H32 MPD . . . D 2 -24.303 42.386 -31.609 1 22.8 ? H32 MPD 401 A 1 HETATM 18 H H4 MPD . . . D 2 -26.557 43.337 -32.918 1 22.8 ? H4 MPD 401 A 1 HETATM 19 H HO4 MPD . . . D 2 -25.46 41.4 -34.668 1 22.8 ? HO4 MPD 401 A 1 HETATM 20 H H51 MPD . . . D 2 -26.576 40.508 -33.226 1 22.8 ? H51 MPD 401 A 1 HETATM 21 H H52 MPD . . . D 2 -25.691 40.879 -31.727 1 22.8 ? H52 MPD 401 A 1 HETATM 22 H H53 MPD . . . D 2 -27.347 41.491 -31.958 1 22.8 ? H53 MPD 401 A 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 22 #