data_7T4H # _model_server_result.job_id qV8IyhuHFQYb5ozTjo-K7Q _model_server_result.datetime_utc '2024-11-27 06:12:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7t4h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 7T4H # _exptl.entry_id 7T4H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 539.22 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'Fe4-Se4 cluster' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7T4H _cell.length_a 45.82 _cell.length_b 74.754 _cell.length_c 74.801 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7T4H _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 17 A SER 16 1_555 E MG MG . A MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc2 A SG CYS 98 A CYS 97 1_555 B FE1 SF4 . A SF4 301 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.285 ? metalc ? metalc3 A SG CYS 98 A CYS 97 1_555 C FE1 SFS . A SFS 302 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.285 ? metalc ? metalc4 A SG CYS 133 A CYS 132 1_555 B FE2 SF4 . A SF4 301 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.297 ? metalc ? metalc5 A SG CYS 133 A CYS 132 1_555 C FE2 SFS . A SFS 302 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.297 ? metalc ? metalc6 D O2B ADP . A ADP 303 1_555 E MG MG . A MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc7 E MG MG . A MG 304 1_555 F O HOH . A HOH 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc8 E MG MG . A MG 304 1_555 F O HOH . A HOH 441 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc9 E MG MG . A MG 304 1_555 F O HOH . A HOH 450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc10 E MG MG . A MG 304 1_555 F O HOH . A HOH 469 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? # _chem_comp.formula 'Fe4 Se4' _chem_comp.formula_weight 539.22 _chem_comp.id SFS _chem_comp.mon_nstd_flag . _chem_comp.name 'Fe4-Se4 cluster' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag SE4 FE1 SFS sing 346 n n SE4 FE3 SFS sing 347 n n SE4 FE2 SFS sing 348 n n FE1 SE3 SFS sing 349 n n FE1 SE2 SFS sing 350 n n FE3 SE2 SFS sing 351 n n FE3 SE1 SFS sing 352 n n FE2 SE3 SFS sing 353 n n FE2 SE1 SFS sing 354 n n SE3 FE4 SFS sing 355 n n FE4 SE2 SFS sing 356 n n FE4 SE1 SFS sing 357 n n # _atom_sites.entry_id 7T4H _atom_sites.fract_transf_matrix[1][1] 0.021825 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013377 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013369 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SF4 A 1 301 301 SF4 SF4 . C 3 SFS A 1 302 302 SFS SFS . D 4 ADP A 1 303 307 ADP ADP . E 5 MG A 1 304 401 MG MG . F 6 HOH A 1 401 38 HOH HOH . F 6 HOH A 2 402 107 HOH HOH . F 6 HOH A 3 403 39 HOH HOH . F 6 HOH A 4 404 96 HOH HOH . F 6 HOH A 5 405 114 HOH HOH . F 6 HOH A 6 406 58 HOH HOH . F 6 HOH A 7 407 56 HOH HOH . F 6 HOH A 8 408 32 HOH HOH . F 6 HOH A 9 409 120 HOH HOH . F 6 HOH A 10 410 110 HOH HOH . F 6 HOH A 11 411 48 HOH HOH . F 6 HOH A 12 412 37 HOH HOH . F 6 HOH A 13 413 116 HOH HOH . F 6 HOH A 14 414 84 HOH HOH . F 6 HOH A 15 415 124 HOH HOH . F 6 HOH A 16 416 127 HOH HOH . F 6 HOH A 17 417 94 HOH HOH . F 6 HOH A 18 418 81 HOH HOH . F 6 HOH A 19 419 17 HOH HOH . F 6 HOH A 20 420 40 HOH HOH . F 6 HOH A 21 421 87 HOH HOH . F 6 HOH A 22 422 95 HOH HOH . F 6 HOH A 23 423 73 HOH HOH . F 6 HOH A 24 424 42 HOH HOH . F 6 HOH A 25 425 112 HOH HOH . F 6 HOH A 26 426 53 HOH HOH . F 6 HOH A 27 427 80 HOH HOH . F 6 HOH A 28 428 30 HOH HOH . F 6 HOH A 29 429 14 HOH HOH . F 6 HOH A 30 430 33 HOH HOH . F 6 HOH A 31 431 76 HOH HOH . F 6 HOH A 32 432 4 HOH HOH . F 6 HOH A 33 433 21 HOH HOH . F 6 HOH A 34 434 47 HOH HOH . F 6 HOH A 35 435 16 HOH HOH . F 6 HOH A 36 436 64 HOH HOH . F 6 HOH A 37 437 5 HOH HOH . F 6 HOH A 38 438 18 HOH HOH . F 6 HOH A 39 439 88 HOH HOH . F 6 HOH A 40 440 85 HOH HOH . F 6 HOH A 41 441 2 HOH HOH . F 6 HOH A 42 442 11 HOH HOH . F 6 HOH A 43 443 131 HOH HOH . F 6 HOH A 44 444 72 HOH HOH . F 6 HOH A 45 445 23 HOH HOH . F 6 HOH A 46 446 9 HOH HOH . F 6 HOH A 47 447 24 HOH HOH . F 6 HOH A 48 448 135 HOH HOH . F 6 HOH A 49 449 36 HOH HOH . F 6 HOH A 50 450 3 HOH HOH . F 6 HOH A 51 451 13 HOH HOH . F 6 HOH A 52 452 93 HOH HOH . F 6 HOH A 53 453 119 HOH HOH . F 6 HOH A 54 454 12 HOH HOH . F 6 HOH A 55 455 43 HOH HOH . F 6 HOH A 56 456 10 HOH HOH . F 6 HOH A 57 457 59 HOH HOH . F 6 HOH A 58 458 115 HOH HOH . F 6 HOH A 59 459 57 HOH HOH . F 6 HOH A 60 460 7 HOH HOH . F 6 HOH A 61 461 105 HOH HOH . F 6 HOH A 62 462 145 HOH HOH . F 6 HOH A 63 463 22 HOH HOH . F 6 HOH A 64 464 19 HOH HOH . F 6 HOH A 65 465 15 HOH HOH . F 6 HOH A 66 466 25 HOH HOH . F 6 HOH A 67 467 28 HOH HOH . F 6 HOH A 68 468 52 HOH HOH . F 6 HOH A 69 469 1 HOH HOH . F 6 HOH A 70 470 106 HOH HOH . F 6 HOH A 71 471 102 HOH HOH . F 6 HOH A 72 472 35 HOH HOH . F 6 HOH A 73 473 132 HOH HOH . F 6 HOH A 74 474 71 HOH HOH . F 6 HOH A 75 475 51 HOH HOH . F 6 HOH A 76 476 6 HOH HOH . F 6 HOH A 77 477 78 HOH HOH . F 6 HOH A 78 478 70 HOH HOH . F 6 HOH A 79 479 54 HOH HOH . F 6 HOH A 80 480 27 HOH HOH . F 6 HOH A 81 481 44 HOH HOH . F 6 HOH A 82 482 45 HOH HOH . F 6 HOH A 83 483 134 HOH HOH . F 6 HOH A 84 484 141 HOH HOH . F 6 HOH A 85 485 31 HOH HOH . F 6 HOH A 86 486 20 HOH HOH . F 6 HOH A 87 487 128 HOH HOH . F 6 HOH A 88 488 49 HOH HOH . F 6 HOH A 89 489 50 HOH HOH . F 6 HOH A 90 490 75 HOH HOH . F 6 HOH A 91 491 67 HOH HOH . F 6 HOH A 92 492 86 HOH HOH . F 6 HOH A 93 493 103 HOH HOH . F 6 HOH A 94 494 91 HOH HOH . F 6 HOH A 95 495 26 HOH HOH . F 6 HOH A 96 496 34 HOH HOH . F 6 HOH A 97 497 82 HOH HOH . F 6 HOH A 98 498 61 HOH HOH . F 6 HOH A 99 499 117 HOH HOH . F 6 HOH A 100 500 130 HOH HOH . F 6 HOH A 101 501 69 HOH HOH . F 6 HOH A 102 502 46 HOH HOH . F 6 HOH A 103 503 83 HOH HOH . F 6 HOH A 104 504 109 HOH HOH . F 6 HOH A 105 505 101 HOH HOH . F 6 HOH A 106 506 111 HOH HOH . F 6 HOH A 107 507 143 HOH HOH . F 6 HOH A 108 508 136 HOH HOH . F 6 HOH A 109 509 140 HOH HOH . F 6 HOH A 110 510 29 HOH HOH . F 6 HOH A 111 511 63 HOH HOH . F 6 HOH A 112 512 133 HOH HOH . F 6 HOH A 113 513 8 HOH HOH . F 6 HOH A 114 514 139 HOH HOH . F 6 HOH A 115 515 104 HOH HOH . F 6 HOH A 116 516 65 HOH HOH . F 6 HOH A 117 517 142 HOH HOH . F 6 HOH A 118 518 90 HOH HOH . F 6 HOH A 119 519 77 HOH HOH . F 6 HOH A 120 520 55 HOH HOH . F 6 HOH A 121 521 62 HOH HOH . F 6 HOH A 122 522 138 HOH HOH . F 6 HOH A 123 523 41 HOH HOH . F 6 HOH A 124 524 113 HOH HOH . F 6 HOH A 125 525 144 HOH HOH . F 6 HOH A 126 526 79 HOH HOH . F 6 HOH A 127 527 137 HOH HOH . F 6 HOH A 128 528 100 HOH HOH . F 6 HOH A 129 529 68 HOH HOH . F 6 HOH A 130 530 148 HOH HOH . F 6 HOH A 131 531 74 HOH HOH . F 6 HOH A 132 532 129 HOH HOH . F 6 HOH A 133 533 121 HOH HOH . F 6 HOH A 134 534 98 HOH HOH . F 6 HOH A 135 535 92 HOH HOH . F 6 HOH A 136 536 147 HOH HOH . F 6 HOH A 137 537 146 HOH HOH . F 6 HOH A 138 538 118 HOH HOH . F 6 HOH A 139 539 122 HOH HOH . F 6 HOH A 140 540 99 HOH HOH . F 6 HOH A 141 541 126 HOH HOH . F 6 HOH A 142 542 60 HOH HOH . F 6 HOH A 143 543 97 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 SE SE4 SFS . B . C 3 36.788 0.687 1.753 0.45 16 ? SE4 SFS 302 A 1 HETATM 2 FE FE1 SFS . B . C 3 36.2 1.308 -0.497 0.51 16 ? FE1 SFS 302 A 1 HETATM 3 FE FE2 SFS . B . C 3 34.374 0.383 1.353 0.45 16 ? FE2 SFS 302 A 1 HETATM 4 SE SE3 SFS . B . C 3 33.808 1.845 -0.475 0.51 16 ? SE3 SFS 302 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #