data_7T5Y # _model_server_result.job_id aIjXnWtUCSF4X-zyZHffzA _model_server_result.datetime_utc '2025-01-11 22:39:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7t5y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":404}' # _entry.id 7T5Y # _exptl.entry_id 7T5Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7T5Y _cell.length_a 104.046 _cell.length_b 169.328 _cell.length_c 129.97 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7T5Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 I N N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 130 n n N1 C10 FMN doub 131 n n C2 O2 FMN doub 132 n n C2 N3 FMN sing 133 n n N3 C4 FMN sing 134 n n N3 HN3 FMN sing 135 n n C4 O4 FMN doub 136 n n C4 C4A FMN sing 137 n n C4A N5 FMN doub 138 n n C4A C10 FMN sing 139 n n N5 C5A FMN sing 140 n n C5A C6 FMN doub 141 n y C5A C9A FMN sing 142 n y C6 C7 FMN sing 143 n y C6 H6 FMN sing 144 n n C7 C7M FMN sing 145 n n C7 C8 FMN doub 146 n y C7M HM71 FMN sing 147 n n C7M HM72 FMN sing 148 n n C7M HM73 FMN sing 149 n n C8 C8M FMN sing 150 n n C8 C9 FMN sing 151 n y C8M HM81 FMN sing 152 n n C8M HM82 FMN sing 153 n n C8M HM83 FMN sing 154 n n C9 C9A FMN doub 155 n y C9 H9 FMN sing 156 n n C9A N10 FMN sing 157 n n N10 C10 FMN sing 158 n n N10 C1' FMN sing 159 n n C1' C2' FMN sing 160 n n C1' "H1'1" FMN sing 161 n n C1' "H1'2" FMN sing 162 n n C2' O2' FMN sing 163 n n C2' C3' FMN sing 164 n n C2' H2' FMN sing 165 n n O2' HO2' FMN sing 166 n n C3' O3' FMN sing 167 n n C3' C4' FMN sing 168 n n C3' H3' FMN sing 169 n n O3' HO3' FMN sing 170 n n C4' O4' FMN sing 171 n n C4' C5' FMN sing 172 n n C4' H4' FMN sing 173 n n O4' HO4' FMN sing 174 n n C5' O5' FMN sing 175 n n C5' "H5'1" FMN sing 176 n n C5' "H5'2" FMN sing 177 n n O5' P FMN sing 178 n n P O1P FMN doub 179 n n P O2P FMN sing 180 n n P O3P FMN sing 181 n n O2P HOP2 FMN sing 182 n n O3P HOP3 FMN sing 183 n n # _atom_sites.entry_id 7T5Y _atom_sites.fract_transf_matrix[1][1] 0.009611 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005906 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007694 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 F2D A 1 401 401 F2D 4NQ . D 3 PO4 A 1 402 501 PO4 PO4 . E 4 ORO A 1 403 502 ORO ORO . F 5 FMN A 1 404 1 FMN FMN . G 2 F2D B 1 401 401 F2D 4NQ . H 4 ORO B 1 402 501 ORO ORO . I 5 FMN B 1 403 1 FMN FMN . J 6 HOH A 1 501 3 HOH HOH . J 6 HOH A 2 502 2 HOH HOH . J 6 HOH A 3 503 53 HOH HOH . J 6 HOH A 4 504 16 HOH HOH . J 6 HOH A 5 505 1 HOH HOH . J 6 HOH A 6 506 14 HOH HOH . J 6 HOH A 7 507 33 HOH HOH . J 6 HOH A 8 508 9 HOH HOH . J 6 HOH A 9 509 57 HOH HOH . J 6 HOH A 10 510 23 HOH HOH . J 6 HOH A 11 511 36 HOH HOH . J 6 HOH A 12 512 30 HOH HOH . J 6 HOH A 13 513 47 HOH HOH . J 6 HOH A 14 514 50 HOH HOH . J 6 HOH A 15 515 54 HOH HOH . J 6 HOH A 16 516 31 HOH HOH . J 6 HOH A 17 517 27 HOH HOH . J 6 HOH A 18 518 22 HOH HOH . J 6 HOH A 19 519 38 HOH HOH . J 6 HOH A 20 520 55 HOH HOH . J 6 HOH A 21 521 28 HOH HOH . J 6 HOH A 22 522 17 HOH HOH . J 6 HOH A 23 523 25 HOH HOH . J 6 HOH A 24 524 37 HOH HOH . J 6 HOH A 25 525 32 HOH HOH . J 6 HOH A 26 526 24 HOH HOH . J 6 HOH A 27 527 52 HOH HOH . J 6 HOH A 28 528 56 HOH HOH . J 6 HOH A 29 529 60 HOH HOH . J 6 HOH A 30 530 51 HOH HOH . J 6 HOH A 31 531 29 HOH HOH . J 6 HOH A 32 532 34 HOH HOH . J 6 HOH A 33 533 42 HOH HOH . J 6 HOH A 34 534 59 HOH HOH . J 6 HOH A 35 535 46 HOH HOH . J 6 HOH A 36 536 35 HOH HOH . J 6 HOH A 37 537 45 HOH HOH . J 6 HOH A 38 538 48 HOH HOH . J 6 HOH A 39 539 43 HOH HOH . J 6 HOH A 40 540 44 HOH HOH . K 6 HOH B 1 501 76 HOH HOH . K 6 HOH B 2 502 85 HOH HOH . K 6 HOH B 3 503 75 HOH HOH . K 6 HOH B 4 504 82 HOH HOH . K 6 HOH B 5 505 83 HOH HOH . K 6 HOH B 6 506 81 HOH HOH . K 6 HOH B 7 507 6 HOH HOH . K 6 HOH B 8 508 89 HOH HOH . K 6 HOH B 9 509 77 HOH HOH . K 6 HOH B 10 510 74 HOH HOH . K 6 HOH B 11 511 49 HOH HOH . K 6 HOH B 12 512 61 HOH HOH . K 6 HOH B 13 513 67 HOH HOH . K 6 HOH B 14 514 96 HOH HOH . K 6 HOH B 15 515 90 HOH HOH . K 6 HOH B 16 516 64 HOH HOH . K 6 HOH B 17 517 94 HOH HOH . K 6 HOH B 18 518 39 HOH HOH . K 6 HOH B 19 519 87 HOH HOH . K 6 HOH B 20 520 92 HOH HOH . K 6 HOH B 21 521 88 HOH HOH . K 6 HOH B 22 522 93 HOH HOH . K 6 HOH B 23 523 26 HOH HOH . K 6 HOH B 24 524 68 HOH HOH . K 6 HOH B 25 525 71 HOH HOH . K 6 HOH B 26 526 40 HOH HOH . K 6 HOH B 27 527 70 HOH HOH . K 6 HOH B 28 528 86 HOH HOH . K 6 HOH B 29 529 41 HOH HOH . K 6 HOH B 30 530 72 HOH HOH . K 6 HOH B 31 531 91 HOH HOH . K 6 HOH B 32 532 95 HOH HOH . K 6 HOH B 33 533 66 HOH HOH . K 6 HOH B 34 534 79 HOH HOH . K 6 HOH B 35 535 78 HOH HOH . K 6 HOH B 36 536 62 HOH HOH . K 6 HOH B 37 537 69 HOH HOH . K 6 HOH B 38 538 73 HOH HOH . K 6 HOH B 39 539 58 HOH HOH . K 6 HOH B 40 540 65 HOH HOH . K 6 HOH B 41 541 63 HOH HOH . K 6 HOH B 42 542 84 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . F 5 13.037 25.138 1.25 1 55.12 ? N1 FMN 404 A 1 HETATM 2 C C2 FMN . . . F 5 14.051 24.763 0.408 1 52.39 ? C2 FMN 404 A 1 HETATM 3 O O2 FMN . . . F 5 13.762 24.234 -0.647 1 56.14 ? O2 FMN 404 A 1 HETATM 4 N N3 FMN . . . F 5 15.37 24.995 0.73 1 53.25 ? N3 FMN 404 A 1 HETATM 5 C C4 FMN . . . F 5 15.7 25.597 1.94 1 53.86 ? C4 FMN 404 A 1 HETATM 6 O O4 FMN . . . F 5 16.872 25.782 2.281 1 53.05 ? O4 FMN 404 A 1 HETATM 7 C C4A FMN . . . F 5 14.683 25.988 2.808 1 57.02 ? C4A FMN 404 A 1 HETATM 8 N N5 FMN . . . F 5 14.983 26.6 4.015 1 55.45 ? N5 FMN 404 A 1 HETATM 9 C C5A FMN . . . F 5 13.939 26.966 4.841 1 53.71 ? C5A FMN 404 A 1 HETATM 10 C C6 FMN . . . F 5 14.237 27.59 6.035 1 55.21 ? C6 FMN 404 A 1 HETATM 11 C C7 FMN . . . F 5 13.218 27.996 6.876 1 48.18 ? C7 FMN 404 A 1 HETATM 12 C C7M FMN . . . F 5 13.577 28.648 8.17 1 50.53 ? C7M FMN 404 A 1 HETATM 13 C C8 FMN . . . F 5 11.895 27.749 6.537 1 48.38 ? C8 FMN 404 A 1 HETATM 14 C C8M FMN . . . F 5 10.785 28.161 7.45 1 48.33 ? C8M FMN 404 A 1 HETATM 15 C C9 FMN . . . F 5 11.591 27.131 5.33 1 49.21 ? C9 FMN 404 A 1 HETATM 16 C C9A FMN . . . F 5 12.617 26.735 4.486 1 50.86 ? C9A FMN 404 A 1 HETATM 17 N N10 FMN . . . F 5 12.333 26.136 3.278 1 53.13 ? N10 FMN 404 A 1 HETATM 18 C C10 FMN . . . F 5 13.351 25.758 2.447 1 55.79 ? C10 FMN 404 A 1 HETATM 19 C C1' FMN . . . F 5 10.942 25.869 2.816 1 51.47 ? C1' FMN 404 A 1 HETATM 20 C C2' FMN . . . F 5 10.486 24.591 3.482 1 50.69 ? C2' FMN 404 A 1 HETATM 21 O O2' FMN . . . F 5 11.184 23.474 2.958 1 45.48 ? O2' FMN 404 A 1 HETATM 22 C C3' FMN . . . F 5 9.009 24.431 3.178 1 48.18 ? C3' FMN 404 A 1 HETATM 23 O O3' FMN . . . F 5 8.898 24.233 1.802 1 51.17 ? O3' FMN 404 A 1 HETATM 24 C C4' FMN . . . F 5 8.128 25.642 3.419 1 47.68 ? C4' FMN 404 A 1 HETATM 25 O O4' FMN . . . F 5 8.351 26.2 4.686 1 47.9 ? O4' FMN 404 A 1 HETATM 26 C C5' FMN . . . F 5 6.664 25.232 3.302 1 49.37 ? C5' FMN 404 A 1 HETATM 27 O O5' FMN . . . F 5 6.391 24.109 4.104 1 47.83 ? O5' FMN 404 A 1 HETATM 28 P P FMN . . . F 5 5.841 24.282 5.602 1 53.05 ? P FMN 404 A 1 HETATM 29 O O1P FMN . . . F 5 6.863 25.015 6.44 1 50.08 ? O1P FMN 404 A 1 HETATM 30 O O2P FMN . . . F 5 4.546 25.045 5.54 1 43.07 -1 O2P FMN 404 A 1 HETATM 31 O O3P FMN . . . F 5 5.627 22.927 6.262 1 56.29 ? O3P FMN 404 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 31 #