data_7T60 # _model_server_result.job_id N0HodyocoB4UavpHMk_Zgw _model_server_result.datetime_utc '2024-10-19 19:39:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7t60 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":303}' # _entry.id 7T60 # _exptl.entry_id 7T60 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7T60 _cell.length_a 80.1 _cell.length_b 82.22 _cell.length_c 222.01 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7T60 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,G,H,I,J,K,L,M,R,S,T 1 1 D,E,F,N,O,P,Q,U,V,W 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 J N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 190 n n C1 C2 GOL sing 191 n n C1 H11 GOL sing 192 n n C1 H12 GOL sing 193 n n O1 HO1 GOL sing 194 n n C2 O2 GOL sing 195 n n C2 C3 GOL sing 196 n n C2 H2 GOL sing 197 n n O2 HO2 GOL sing 198 n n C3 O3 GOL sing 199 n n C3 H31 GOL sing 200 n n C3 H32 GOL sing 201 n n O3 HO3 GOL sing 202 n n # _atom_sites.entry_id 7T60 _atom_sites.fract_transf_matrix[1][1] 0.012484 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012162 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004504 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 GOL A 1 501 501 GOL GOL . H 3 F9H B 1 301 301 F9H 88 . I 4 TRS B 1 302 401 TRS TRS . J 2 GOL B 1 303 501 GOL GOL . K 3 F9H C 1 301 301 F9H 88 . L 3 F9H C 1 302 401 F9H 88 . M 3 F9H C 1 303 301 F9H 88 . N 3 F9H D 1 301 301 F9H 88 . O 3 F9H E 1 301 301 F9H 88 . P 3 F9H E 1 302 401 F9H 88 . Q 3 F9H F 1 301 301 F9H 88 . R 5 HOH A 1 601 11 HOH HOH . R 5 HOH A 2 602 47 HOH HOH . R 5 HOH A 3 603 38 HOH HOH . R 5 HOH A 4 604 49 HOH HOH . R 5 HOH A 5 605 217 HOH HOH . R 5 HOH A 6 606 206 HOH HOH . R 5 HOH A 7 607 203 HOH HOH . R 5 HOH A 8 608 483 HOH HOH . R 5 HOH A 9 609 199 HOH HOH . R 5 HOH A 10 610 99 HOH HOH . R 5 HOH A 11 611 56 HOH HOH . R 5 HOH A 12 612 155 HOH HOH . R 5 HOH A 13 613 122 HOH HOH . R 5 HOH A 14 614 361 HOH HOH . R 5 HOH A 15 615 259 HOH HOH . R 5 HOH A 16 616 241 HOH HOH . R 5 HOH A 17 617 121 HOH HOH . R 5 HOH A 18 618 298 HOH HOH . R 5 HOH A 19 619 124 HOH HOH . R 5 HOH A 20 620 137 HOH HOH . R 5 HOH A 21 621 191 HOH HOH . R 5 HOH A 22 622 399 HOH HOH . R 5 HOH A 23 623 138 HOH HOH . R 5 HOH A 24 624 3 HOH HOH . R 5 HOH A 25 625 74 HOH HOH . R 5 HOH A 26 626 42 HOH HOH . R 5 HOH A 27 627 13 HOH HOH . R 5 HOH A 28 628 428 HOH HOH . R 5 HOH A 29 629 197 HOH HOH . R 5 HOH A 30 630 92 HOH HOH . R 5 HOH A 31 631 231 HOH HOH . R 5 HOH A 32 632 41 HOH HOH . R 5 HOH A 33 633 223 HOH HOH . R 5 HOH A 34 634 64 HOH HOH . R 5 HOH A 35 635 7 HOH HOH . R 5 HOH A 36 636 258 HOH HOH . R 5 HOH A 37 637 243 HOH HOH . R 5 HOH A 38 638 43 HOH HOH . R 5 HOH A 39 639 417 HOH HOH . R 5 HOH A 40 640 88 HOH HOH . R 5 HOH A 41 641 26 HOH HOH . R 5 HOH A 42 642 146 HOH HOH . R 5 HOH A 43 643 10 HOH HOH . R 5 HOH A 44 644 139 HOH HOH . R 5 HOH A 45 645 254 HOH HOH . R 5 HOH A 46 646 70 HOH HOH . R 5 HOH A 47 647 150 HOH HOH . R 5 HOH A 48 648 201 HOH HOH . R 5 HOH A 49 649 25 HOH HOH . R 5 HOH A 50 650 39 HOH HOH . R 5 HOH A 51 651 31 HOH HOH . R 5 HOH A 52 652 21 HOH HOH . R 5 HOH A 53 653 16 HOH HOH . R 5 HOH A 54 654 100 HOH HOH . R 5 HOH A 55 655 386 HOH HOH . R 5 HOH A 56 656 23 HOH HOH . R 5 HOH A 57 657 355 HOH HOH . R 5 HOH A 58 658 55 HOH HOH . R 5 HOH A 59 659 18 HOH HOH . R 5 HOH A 60 660 72 HOH HOH . R 5 HOH A 61 661 402 HOH HOH . R 5 HOH A 62 662 118 HOH HOH . R 5 HOH A 63 663 51 HOH HOH . R 5 HOH A 64 664 188 HOH HOH . R 5 HOH A 65 665 369 HOH HOH . R 5 HOH A 66 666 30 HOH HOH . R 5 HOH A 67 667 313 HOH HOH . R 5 HOH A 68 668 130 HOH HOH . R 5 HOH A 69 669 768 HOH HOH . R 5 HOH A 70 670 255 HOH HOH . R 5 HOH A 71 671 226 HOH HOH . R 5 HOH A 72 672 29 HOH HOH . R 5 HOH A 73 673 238 HOH HOH . R 5 HOH A 74 674 469 HOH HOH . S 5 HOH B 1 401 266 HOH HOH . S 5 HOH B 2 402 61 HOH HOH . S 5 HOH B 3 403 69 HOH HOH . S 5 HOH B 4 404 46 HOH HOH . S 5 HOH B 5 405 34 HOH HOH . S 5 HOH B 6 406 77 HOH HOH . S 5 HOH B 7 407 22 HOH HOH . S 5 HOH B 8 408 6 HOH HOH . S 5 HOH B 9 409 65 HOH HOH . S 5 HOH B 10 410 23 HOH HOH . S 5 HOH B 11 411 33 HOH HOH . S 5 HOH B 12 412 247 HOH HOH . S 5 HOH B 13 413 84 HOH HOH . S 5 HOH B 14 414 311 HOH HOH . S 5 HOH B 15 415 4 HOH HOH . S 5 HOH B 16 416 144 HOH HOH . S 5 HOH B 17 417 115 HOH HOH . S 5 HOH B 18 418 218 HOH HOH . S 5 HOH B 19 419 67 HOH HOH . S 5 HOH B 20 420 63 HOH HOH . S 5 HOH B 21 421 159 HOH HOH . S 5 HOH B 22 422 242 HOH HOH . S 5 HOH B 23 423 276 HOH HOH . S 5 HOH B 24 424 9 HOH HOH . S 5 HOH B 25 425 56 HOH HOH . S 5 HOH B 26 426 346 HOH HOH . S 5 HOH B 27 427 68 HOH HOH . S 5 HOH B 28 428 30 HOH HOH . S 5 HOH B 29 429 167 HOH HOH . S 5 HOH B 30 430 10 HOH HOH . S 5 HOH B 31 431 237 HOH HOH . S 5 HOH B 32 432 75 HOH HOH . S 5 HOH B 33 433 734 HOH HOH . S 5 HOH B 34 434 20 HOH HOH . S 5 HOH B 35 435 171 HOH HOH . S 5 HOH B 36 436 45 HOH HOH . S 5 HOH B 37 437 731 HOH HOH . S 5 HOH B 38 438 752 HOH HOH . S 5 HOH B 39 439 406 HOH HOH . S 5 HOH B 40 440 51 HOH HOH . S 5 HOH B 41 441 73 HOH HOH . S 5 HOH B 42 442 732 HOH HOH . S 5 HOH B 43 443 2 HOH HOH . S 5 HOH B 44 444 80 HOH HOH . T 5 HOH C 1 401 3 HOH HOH . T 5 HOH C 2 402 66 HOH HOH . T 5 HOH C 3 403 114 HOH HOH . T 5 HOH C 4 404 9 HOH HOH . T 5 HOH C 5 405 41 HOH HOH . T 5 HOH C 6 406 170 HOH HOH . T 5 HOH C 7 407 151 HOH HOH . T 5 HOH C 8 408 70 HOH HOH . T 5 HOH C 9 409 19 HOH HOH . T 5 HOH C 10 410 281 HOH HOH . T 5 HOH C 11 411 15 HOH HOH . T 5 HOH C 12 412 53 HOH HOH . T 5 HOH C 13 413 53 HOH HOH . T 5 HOH C 14 414 49 HOH HOH . T 5 HOH C 15 415 26 HOH HOH . T 5 HOH C 16 416 602 HOH HOH . T 5 HOH C 17 417 140 HOH HOH . T 5 HOH C 18 418 108 HOH HOH . T 5 HOH C 19 419 42 HOH HOH . T 5 HOH C 20 420 16 HOH HOH . T 5 HOH C 21 421 120 HOH HOH . T 5 HOH C 22 422 61 HOH HOH . T 5 HOH C 23 423 58 HOH HOH . T 5 HOH C 24 424 219 HOH HOH . T 5 HOH C 25 425 103 HOH HOH . T 5 HOH C 26 426 284 HOH HOH . T 5 HOH C 27 427 113 HOH HOH . T 5 HOH C 28 428 382 HOH HOH . T 5 HOH C 29 429 36 HOH HOH . T 5 HOH C 30 430 6 HOH HOH . T 5 HOH C 31 431 43 HOH HOH . T 5 HOH C 32 432 15 HOH HOH . T 5 HOH C 33 433 460 HOH HOH . T 5 HOH C 34 434 303 HOH HOH . T 5 HOH C 35 435 82 HOH HOH . T 5 HOH C 36 436 1 HOH HOH . T 5 HOH C 37 437 46 HOH HOH . T 5 HOH C 38 438 309 HOH HOH . T 5 HOH C 39 439 738 HOH HOH . T 5 HOH C 40 440 76 HOH HOH . T 5 HOH C 41 441 179 HOH HOH . T 5 HOH C 42 442 31 HOH HOH . U 5 HOH D 1 401 196 HOH HOH . U 5 HOH D 2 402 8 HOH HOH . U 5 HOH D 3 403 330 HOH HOH . U 5 HOH D 4 404 289 HOH HOH . U 5 HOH D 5 405 97 HOH HOH . U 5 HOH D 6 406 29 HOH HOH . U 5 HOH D 7 407 162 HOH HOH . U 5 HOH D 8 408 398 HOH HOH . U 5 HOH D 9 409 300 HOH HOH . U 5 HOH D 10 410 135 HOH HOH . U 5 HOH D 11 411 134 HOH HOH . U 5 HOH D 12 412 1 HOH HOH . U 5 HOH D 13 413 38 HOH HOH . U 5 HOH D 14 414 125 HOH HOH . U 5 HOH D 15 415 64 HOH HOH . U 5 HOH D 16 416 52 HOH HOH . U 5 HOH D 17 417 183 HOH HOH . U 5 HOH D 18 418 73 HOH HOH . U 5 HOH D 19 419 47 HOH HOH . U 5 HOH D 20 420 5 HOH HOH . U 5 HOH D 21 421 18 HOH HOH . U 5 HOH D 22 422 86 HOH HOH . U 5 HOH D 23 423 75 HOH HOH . U 5 HOH D 24 424 375 HOH HOH . U 5 HOH D 25 425 193 HOH HOH . U 5 HOH D 26 426 286 HOH HOH . U 5 HOH D 27 427 94 HOH HOH . U 5 HOH D 28 428 34 HOH HOH . U 5 HOH D 29 429 236 HOH HOH . U 5 HOH D 30 430 79 HOH HOH . U 5 HOH D 31 431 55 HOH HOH . U 5 HOH D 32 432 50 HOH HOH . U 5 HOH D 33 433 277 HOH HOH . U 5 HOH D 34 434 105 HOH HOH . U 5 HOH D 35 435 62 HOH HOH . U 5 HOH D 36 436 13 HOH HOH . U 5 HOH D 37 437 78 HOH HOH . V 5 HOH E 1 401 25 HOH HOH . V 5 HOH E 2 402 54 HOH HOH . V 5 HOH E 3 403 48 HOH HOH . V 5 HOH E 4 404 57 HOH HOH . V 5 HOH E 5 405 59 HOH HOH . V 5 HOH E 6 406 19 HOH HOH . V 5 HOH E 7 407 17 HOH HOH . V 5 HOH E 8 408 320 HOH HOH . V 5 HOH E 9 409 7 HOH HOH . V 5 HOH E 10 410 27 HOH HOH . V 5 HOH E 11 411 438 HOH HOH . V 5 HOH E 12 412 93 HOH HOH . V 5 HOH E 13 413 69 HOH HOH . V 5 HOH E 14 414 11 HOH HOH . V 5 HOH E 15 415 116 HOH HOH . V 5 HOH E 16 416 32 HOH HOH . V 5 HOH E 17 417 48 HOH HOH . V 5 HOH E 18 418 414 HOH HOH . V 5 HOH E 19 419 149 HOH HOH . V 5 HOH E 20 420 175 HOH HOH . V 5 HOH E 21 421 77 HOH HOH . V 5 HOH E 22 422 296 HOH HOH . V 5 HOH E 23 423 227 HOH HOH . V 5 HOH E 24 424 441 HOH HOH . V 5 HOH E 25 425 33 HOH HOH . V 5 HOH E 26 426 307 HOH HOH . V 5 HOH E 27 427 45 HOH HOH . V 5 HOH E 28 428 39 HOH HOH . V 5 HOH E 29 429 158 HOH HOH . V 5 HOH E 30 430 83 HOH HOH . V 5 HOH E 31 431 740 HOH HOH . V 5 HOH E 32 432 756 HOH HOH . V 5 HOH E 33 433 80 HOH HOH . W 5 HOH F 1 401 353 HOH HOH . W 5 HOH F 2 402 28 HOH HOH . W 5 HOH F 3 403 35 HOH HOH . W 5 HOH F 4 404 60 HOH HOH . W 5 HOH F 5 405 79 HOH HOH . W 5 HOH F 6 406 4 HOH HOH . W 5 HOH F 7 407 95 HOH HOH . W 5 HOH F 8 408 54 HOH HOH . W 5 HOH F 9 409 71 HOH HOH . W 5 HOH F 10 410 249 HOH HOH . W 5 HOH F 11 411 63 HOH HOH . W 5 HOH F 12 412 220 HOH HOH . W 5 HOH F 13 413 112 HOH HOH . W 5 HOH F 14 414 299 HOH HOH . W 5 HOH F 15 415 531 HOH HOH . W 5 HOH F 16 416 40 HOH HOH . W 5 HOH F 17 417 24 HOH HOH . W 5 HOH F 18 418 389 HOH HOH . W 5 HOH F 19 419 17 HOH HOH . W 5 HOH F 20 420 131 HOH HOH . W 5 HOH F 21 421 181 HOH HOH . W 5 HOH F 22 422 106 HOH HOH . W 5 HOH F 23 423 5 HOH HOH . W 5 HOH F 24 424 85 HOH HOH . W 5 HOH F 25 425 129 HOH HOH . W 5 HOH F 26 426 190 HOH HOH . W 5 HOH F 27 427 87 HOH HOH . W 5 HOH F 28 428 119 HOH HOH . W 5 HOH F 29 429 91 HOH HOH . W 5 HOH F 30 430 8 HOH HOH . W 5 HOH F 31 431 24 HOH HOH . W 5 HOH F 32 432 84 HOH HOH . W 5 HOH F 33 433 37 HOH HOH . W 5 HOH F 34 434 229 HOH HOH . W 5 HOH F 35 435 66 HOH HOH . W 5 HOH F 36 436 44 HOH HOH . W 5 HOH F 37 437 14 HOH HOH . W 5 HOH F 38 438 71 HOH HOH . W 5 HOH F 39 439 224 HOH HOH . W 5 HOH F 40 440 172 HOH HOH . W 5 HOH F 41 441 189 HOH HOH . W 5 HOH F 42 442 212 HOH HOH . W 5 HOH F 43 443 36 HOH HOH . W 5 HOH F 44 444 370 HOH HOH . W 5 HOH F 45 445 27 HOH HOH . W 5 HOH F 46 446 12 HOH HOH . W 5 HOH F 47 447 147 HOH HOH . W 5 HOH F 48 448 154 HOH HOH . W 5 HOH F 49 449 40 HOH HOH . W 5 HOH F 50 450 164 HOH HOH . W 5 HOH F 51 451 283 HOH HOH . W 5 HOH F 52 452 187 HOH HOH . W 5 HOH F 53 453 539 HOH HOH . W 5 HOH F 54 454 746 HOH HOH . W 5 HOH F 55 455 737 HOH HOH . W 5 HOH F 56 456 733 HOH HOH . W 5 HOH F 57 457 81 HOH HOH . W 5 HOH F 58 458 65 HOH HOH . W 5 HOH F 59 459 750 HOH HOH . W 5 HOH F 60 460 228 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . J 2 -42.617 -21.556 19.827 1 57.86 ? C1 GOL 303 B 1 HETATM 2 O O1 GOL . . . J 2 -42.163 -22.825 20.279 1 56.3 ? O1 GOL 303 B 1 HETATM 3 C C2 GOL . . . J 2 -43.137 -20.713 20.969 1 59.74 ? C2 GOL 303 B 1 HETATM 4 O O2 GOL . . . J 2 -42.557 -21.081 22.215 1 54.54 ? O2 GOL 303 B 1 HETATM 5 C C3 GOL . . . J 2 -42.98 -19.236 20.725 1 57.84 ? C3 GOL 303 B 1 HETATM 6 O O3 GOL . . . J 2 -43.662 -18.88 19.53 1 62.92 ? O3 GOL 303 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 227 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 6 #