data_7T65 # _model_server_result.job_id VKxqB1LbgvFa44NDOWdcjg _model_server_result.datetime_utc '2024-11-04 22:33:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7t65 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":5102}' # _entry.id 7T65 # _exptl.entry_id 7T65 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 40.078 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7T65 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7T65 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 J N N ? 4 M N N ? 4 P N N ? 4 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 4958 A CYS 4958 1_555 A SG CYS 4961 A CYS 4961 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? disulf ? disulf2 B SG CYS 4958 B CYS 4958 1_555 B SG CYS 4961 B CYS 4961 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.954 ? disulf ? disulf3 C SG CYS 4958 C CYS 4958 1_555 C SG CYS 4961 C CYS 4961 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? disulf ? disulf4 D SG CYS 4958 D CYS 4958 1_555 D SG CYS 4961 D CYS 4961 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.954 ? metalc ? metalc1 A OE1 GLU 3893 A GLU 3893 1_555 J CA CA . A CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.015 ? metalc ? metalc2 A OE2 GLU 3893 A GLU 3893 1_555 J CA CA . A CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? metalc ? metalc3 A OE1 GLU 3967 A GLU 3967 1_555 J CA CA . A CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? metalc ? metalc4 A OE2 GLU 3967 A GLU 3967 1_555 J CA CA . A CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? metalc ? metalc5 A SG CYS 4958 A CYS 4958 1_555 K ZN ZN . A ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc6 A SG CYS 4961 A CYS 4961 1_555 K ZN ZN . A ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc7 A ND1 HIS 4983 A HIS 4983 1_555 K ZN ZN . A ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc8 A O THR 5001 A THR 5001 1_555 J CA CA . A CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc9 B OE1 GLU 3893 B GLU 3893 1_555 M CA CA . B CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.015 ? metalc ? metalc10 B OE2 GLU 3893 B GLU 3893 1_555 M CA CA . B CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? metalc ? metalc11 B OE1 GLU 3967 B GLU 3967 1_555 M CA CA . B CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.53 ? metalc ? metalc12 B OE2 GLU 3967 B GLU 3967 1_555 M CA CA . B CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? metalc ? metalc13 B SG CYS 4958 B CYS 4958 1_555 N ZN ZN . B ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc14 B SG CYS 4961 B CYS 4961 1_555 N ZN ZN . B ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc15 B ND1 HIS 4983 B HIS 4983 1_555 N ZN ZN . B ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc16 B O THR 5001 B THR 5001 1_555 M CA CA . B CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc17 C OE1 GLU 3893 C GLU 3893 1_555 P CA CA . C CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.015 ? metalc ? metalc18 C OE2 GLU 3893 C GLU 3893 1_555 P CA CA . C CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? metalc ? metalc19 C OE1 GLU 3967 C GLU 3967 1_555 P CA CA . C CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.53 ? metalc ? metalc20 C OE2 GLU 3967 C GLU 3967 1_555 P CA CA . C CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? metalc ? metalc21 C SG CYS 4958 C CYS 4958 1_555 Q ZN ZN . C ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc22 C SG CYS 4961 C CYS 4961 1_555 Q ZN ZN . C ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc23 C ND1 HIS 4983 C HIS 4983 1_555 Q ZN ZN . C ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc24 C O THR 5001 C THR 5001 1_555 P CA CA . C CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc25 D OE1 GLU 3893 D GLU 3893 1_555 S CA CA . D CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.015 ? metalc ? metalc26 D OE2 GLU 3893 D GLU 3893 1_555 S CA CA . D CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? metalc ? metalc27 D OE1 GLU 3967 D GLU 3967 1_555 S CA CA . D CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.53 ? metalc ? metalc28 D OE2 GLU 3967 D GLU 3967 1_555 S CA CA . D CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? metalc ? metalc29 D SG CYS 4958 D CYS 4958 1_555 T ZN ZN . D ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc30 D SG CYS 4961 D CYS 4961 1_555 T ZN ZN . D ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc31 D ND1 HIS 4983 D HIS 4983 1_555 T ZN ZN . D ZN 5103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc32 D O THR 5001 D THR 5001 1_555 S CA CA . D CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7T65 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 ATP A 1 5101 5101 ATP ATP . J 4 CA A 1 5102 5104 CA CA . K 5 ZN A 1 5103 6000 ZN ZN . L 3 ATP B 1 5101 5101 ATP ATP . M 4 CA B 1 5102 5104 CA CA . N 5 ZN B 1 5103 6000 ZN ZN . O 3 ATP C 1 5101 5101 ATP ATP . P 4 CA C 1 5102 5104 CA CA . Q 5 ZN C 1 5103 6000 ZN ZN . R 3 ATP D 1 5101 5101 ATP ATP . S 4 CA D 1 5102 5104 CA CA . T 5 ZN D 1 5103 6000 ZN ZN . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 4 _atom_site.Cartn_x 227.909 _atom_site.Cartn_y 186.628 _atom_site.Cartn_z 219.661 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 90.5 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 5102 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 262 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 199 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #