data_7T6D
#
_model_server_result.job_id            lWUTrskVtgE-qhdgxxA0Sg 
_model_server_result.datetime_utc      '2024-11-21 13:49:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7t6d 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":601}' 
#
_entry.id    7T6D 
#
_exptl.entry_id    7T6D 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              749.007 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7T6D 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7T6D 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C40 H77 O10 P' 
_chem_comp.formula_weight    749.007 
_chem_comp.id                PGV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     PHOSPHATIDYLGLYCEROL;2-VACCENOYL-1-PALMITOYL-SN-GLYCEROL-3-PHOSPHOGLYCEROL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O11 PGV sing 347 n n 
P O12 PGV sing 348 n n 
P O13 PGV doub 349 n n 
P O14 PGV sing 350 n n 
C01 C02 PGV sing 351 n n 
C01 O03 PGV sing 352 n n 
C01 H011 PGV sing 353 n n 
C01 H012 PGV sing 354 n n 
C02 C03 PGV sing 355 n n 
C02 O01 PGV sing 356 n n 
C02 H02 PGV sing 357 n n 
C03 O11 PGV sing 358 n n 
C03 H031 PGV sing 359 n n 
C03 H032 PGV sing 360 n n 
C04 C05 PGV sing 361 n n 
C04 O12 PGV sing 362 n n 
C04 H041 PGV sing 363 n n 
C04 H042 PGV sing 364 n n 
C05 C06 PGV sing 365 n n 
C05 O05 PGV sing 366 n n 
C05 H05 PGV sing 367 n n 
C06 O06 PGV sing 368 n n 
C06 H061 PGV sing 369 n n 
C06 H062 PGV sing 370 n n 
O01 C1 PGV sing 371 n n 
O02 C1 PGV doub 372 n n 
O03 C19 PGV sing 373 n n 
O04 C19 PGV doub 374 n n 
O05 H1 PGV sing 375 n n 
O06 H06 PGV sing 376 n n 
O14 H14 PGV sing 377 n n 
C1 C2 PGV sing 378 n n 
C2 C3 PGV sing 379 n n 
C2 H21 PGV sing 380 n n 
C2 H22 PGV sing 381 n n 
C3 C4 PGV sing 382 n n 
C3 H31 PGV sing 383 n n 
C3 H32 PGV sing 384 n n 
C4 C5 PGV sing 385 n n 
C4 H41 PGV sing 386 n n 
C4 H42 PGV sing 387 n n 
C5 C6 PGV sing 388 n n 
C5 H51 PGV sing 389 n n 
C5 H52 PGV sing 390 n n 
C6 C7 PGV sing 391 n n 
C6 H61 PGV sing 392 n n 
C6 H62 PGV sing 393 n n 
C7 C8 PGV sing 394 n n 
C7 H71 PGV sing 395 n n 
C7 H72 PGV sing 396 n n 
C8 C9 PGV sing 397 n n 
C8 H81 PGV sing 398 n n 
C8 H82 PGV sing 399 n n 
C9 C10 PGV sing 400 n n 
C9 H91 PGV sing 401 n n 
C9 H92 PGV sing 402 n n 
C10 C11 PGV sing 403 n n 
C10 H101 PGV sing 404 n n 
C10 H102 PGV sing 405 n n 
C11 C12 PGV doub 406 z n 
C11 H11 PGV sing 407 n n 
C12 C13 PGV sing 408 n n 
C12 H12 PGV sing 409 n n 
C13 C14 PGV sing 410 n n 
C13 H131 PGV sing 411 n n 
C13 H132 PGV sing 412 n n 
C14 C15 PGV sing 413 n n 
C14 H141 PGV sing 414 n n 
C14 H142 PGV sing 415 n n 
C15 C16 PGV sing 416 n n 
C15 H151 PGV sing 417 n n 
C15 H152 PGV sing 418 n n 
C16 C17 PGV sing 419 n n 
C16 H161 PGV sing 420 n n 
C16 H162 PGV sing 421 n n 
C17 C18 PGV sing 422 n n 
C17 H171 PGV sing 423 n n 
C17 H172 PGV sing 424 n n 
C18 H181 PGV sing 425 n n 
C18 H182 PGV sing 426 n n 
C18 H183 PGV sing 427 n n 
C19 C20 PGV sing 428 n n 
C20 C21 PGV sing 429 n n 
C20 H201 PGV sing 430 n n 
C20 H202 PGV sing 431 n n 
C21 C22 PGV sing 432 n n 
C21 H211 PGV sing 433 n n 
C21 H212 PGV sing 434 n n 
C22 C23 PGV sing 435 n n 
C22 H221 PGV sing 436 n n 
C22 H222 PGV sing 437 n n 
C23 C24 PGV sing 438 n n 
C23 H231 PGV sing 439 n n 
C23 H232 PGV sing 440 n n 
C24 C25 PGV sing 441 n n 
C24 H241 PGV sing 442 n n 
C24 H242 PGV sing 443 n n 
C25 C26 PGV sing 444 n n 
C25 H251 PGV sing 445 n n 
C25 H252 PGV sing 446 n n 
C26 C27 PGV sing 447 n n 
C26 H261 PGV sing 448 n n 
C26 H262 PGV sing 449 n n 
C27 C28 PGV sing 450 n n 
C27 H271 PGV sing 451 n n 
C27 H272 PGV sing 452 n n 
C28 C29 PGV sing 453 n n 
C28 H281 PGV sing 454 n n 
C28 H282 PGV sing 455 n n 
C29 C30 PGV sing 456 n n 
C29 H291 PGV sing 457 n n 
C29 H292 PGV sing 458 n n 
C30 C31 PGV sing 459 n n 
C30 H301 PGV sing 460 n n 
C30 H302 PGV sing 461 n n 
C31 C32 PGV sing 462 n n 
C31 H311 PGV sing 463 n n 
C31 H312 PGV sing 464 n n 
C32 C33 PGV sing 465 n n 
C32 H321 PGV sing 466 n n 
C32 H322 PGV sing 467 n n 
C33 C34 PGV sing 468 n n 
C33 H331 PGV sing 469 n n 
C33 H332 PGV sing 470 n n 
C34 H341 PGV sing 471 n n 
C34 H342 PGV sing 472 n n 
C34 H343 PGV sing 473 n n 
#
_atom_sites.entry_id                     7T6D 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 LPP A 1 401 602 LPP LPP . 
F 4 PGV C 1 601 601 PGV PGV . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P PGV . . . F 4 135.825 106.133 108.757 1 76.79 ? P PGV 601 C 1 
HETATM 2 C C01 PGV . . . F 4 139.604 106.093 111.51 1 76.29 ? C01 PGV 601 C 1 
HETATM 3 C C02 PGV . . . F 4 139.379 106.899 110.25 1 77.6 ? C02 PGV 601 C 1 
HETATM 4 C C03 PGV . . . F 4 138.405 106.258 109.288 1 76.97 ? C03 PGV 601 C 1 
HETATM 5 C C04 PGV . . . F 4 136.372 105.304 106.316 1 76 ? C04 PGV 601 C 1 
HETATM 6 C C05 PGV . . . F 4 137.279 105.741 105.191 1 75.66 ? C05 PGV 601 C 1 
HETATM 7 C C06 PGV . . . F 4 137.392 104.736 104.065 1 75.64 ? C06 PGV 601 C 1 
HETATM 8 O O01 PGV . . . F 4 140.687 107.094 109.641 1 78.68 ? O01 PGV 601 C 1 
HETATM 9 O O02 PGV . . . F 4 141.135 107.207 107.478 1 81.6 ? O02 PGV 601 C 1 
HETATM 10 O O03 PGV . . . F 4 138.469 105.234 111.754 1 76.14 ? O03 PGV 601 C 1 
HETATM 11 O O04 PGV . . . F 4 136.84 105.2 113.25 1 76.6 ? O04 PGV 601 C 1 
HETATM 12 O O05 PGV . . . F 4 138.569 106.065 105.709 1 75.26 ? O05 PGV 601 C 1 
HETATM 13 O O06 PGV . . . F 4 136.85 103.464 104.413 1 75.25 ? O06 PGV 601 C 1 
HETATM 14 O O11 PGV . . . F 4 137.072 106.789 109.526 1 76.65 ? O11 PGV 601 C 1 
HETATM 15 O O12 PGV . . . F 4 136.172 106.421 107.219 1 76.05 ? O12 PGV 601 C 1 
HETATM 16 O O13 PGV . . . F 4 135.87 104.652 109.002 1 77.16 ? O13 PGV 601 C 1 
HETATM 17 O O14 PGV . . . F 4 134.571 106.893 109.081 1 77.53 ? O14 PGV 601 C 1 
HETATM 18 C C1 PGV . . . F 4 140.776 107.76 108.481 1 80.69 ? C1 PGV 601 C 1 
HETATM 19 C C2 PGV . . . F 4 140.42 109.221 108.559 1 81.64 ? C2 PGV 601 C 1 
HETATM 20 C C3 PGV . . . F 4 139.678 109.715 107.353 1 84.01 ? C3 PGV 601 C 1 
HETATM 21 C C4 PGV . . . F 4 138.432 110.506 107.711 1 84.85 ? C4 PGV 601 C 1 
HETATM 22 C C5 PGV . . . F 4 137.131 109.856 107.304 1 86.02 ? C5 PGV 601 C 1 
HETATM 23 C C6 PGV . . . F 4 135.895 110.5 107.892 1 86.94 ? C6 PGV 601 C 1 
HETATM 24 C C7 PGV . . . F 4 135.817 110.448 109.399 1 85.58 ? C7 PGV 601 C 1 
HETATM 25 C C8 PGV . . . F 4 134.414 110.379 109.951 1 86.51 ? C8 PGV 601 C 1 
HETATM 26 C C9 PGV . . . F 4 134.29 109.56 111.229 1 85.35 ? C9 PGV 601 C 1 
HETATM 27 C C10 PGV . . . F 4 132.885 109.305 111.676 1 85.68 ? C10 PGV 601 C 1 
HETATM 28 C C11 PGV . . . F 4 132.735 109.272 113.165 1 83.82 ? C11 PGV 601 C 1 
HETATM 29 C C12 PGV . . . F 4 132.268 110.237 113.914 1 84.53 ? C12 PGV 601 C 1 
HETATM 30 C C13 PGV . . . F 4 132.839 110.666 115.227 1 84.4 ? C13 PGV 601 C 1 
HETATM 31 C C14 PGV . . . F 4 132.77 112.136 115.437 1 86.47 ? C14 PGV 601 C 1 
HETATM 32 C C15 PGV . . . F 4 134.121 112.806 115.583 1 86.84 ? C15 PGV 601 C 1 
HETATM 33 C C16 PGV . . . F 4 134.196 114.171 114.954 1 89.17 ? C16 PGV 601 C 1 
HETATM 34 C C17 PGV . . . F 4 135.573 114.756 114.821 1 89.15 ? C17 PGV 601 C 1 
HETATM 35 C C18 PGV . . . F 4 136.034 115.02 113.412 1 91.1 ? C18 PGV 601 C 1 
HETATM 36 C C19 PGV . . . F 4 138.013 105.189 112.999 1 76.98 ? C19 PGV 601 C 1 
HETATM 37 C C20 PGV . . . F 4 139.136 105.121 114.003 1 78.56 ? C20 PGV 601 C 1 
HETATM 38 C C21 PGV . . . F 4 138.678 104.998 115.423 1 79.93 ? C21 PGV 601 C 1 
HETATM 39 C C22 PGV . . . F 4 138.499 106.341 116.11 1 80.25 ? C22 PGV 601 C 1 
HETATM 40 C C23 PGV . . . F 4 137.165 106.508 116.796 1 82.25 ? C23 PGV 601 C 1 
HETATM 41 C C24 PGV . . . F 4 136.92 107.875 117.377 1 84.19 ? C24 PGV 601 C 1 
HETATM 42 C C25 PGV . . . F 4 135.76 107.935 118.334 1 84.91 ? C25 PGV 601 C 1 
HETATM 43 C C26 PGV . . . F 4 135.956 108.866 119.501 1 84.44 ? C26 PGV 601 C 1 
HETATM 44 C C27 PGV . . . F 4 134.824 108.861 120.495 1 85.68 ? C27 PGV 601 C 1 
HETATM 45 C C28 PGV . . . F 4 135.27 108.94 121.921 1 84.26 ? C28 PGV 601 C 1 
HETATM 46 C C29 PGV . . . F 4 134.151 108.993 122.904 1 84.87 ? C29 PGV 601 C 1 
HETATM 47 C C30 PGV . . . F 4 133.271 110.199 122.755 1 83.44 ? C30 PGV 601 C 1 
HETATM 48 C C31 PGV . . . F 4 131.892 110.041 123.342 1 84.6 ? C31 PGV 601 C 1 
HETATM 49 C C32 PGV . . . F 4 131.707 110.677 124.683 1 85.15 ? C32 PGV 601 C 1 
HETATM 50 C C33 PGV . . . F 4 130.361 111.31 124.87 1 83.65 ? C33 PGV 601 C 1 
HETATM 51 C C34 PGV . . . F 4 130.419 112.645 125.559 1 83.31 ? C34 PGV 601 C 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           233 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           51 
#