data_7T78 # _model_server_result.job_id fMaClbuuXQJEQK6D-2QXgA _model_server_result.datetime_utc '2024-12-27 03:21:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7t78 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 7T78 # _exptl.entry_id 7T78 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.38 _cell.angle_gamma 90 _cell.entry_id 7T78 _cell.length_a 76.37 _cell.length_b 83.7 _cell.length_c 84.97 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7T78 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,J 1 1 B,G,H,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O MET 239 A MET 238 1_555 D NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc2 A O VAL 242 A VAL 241 1_555 D NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc3 A O VAL 245 A VAL 244 1_555 D NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc4 A O GLY 247 A GLY 246 1_555 D NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? metalc ? metalc5 B O MET 239 B MET 238 1_555 H NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc6 B O VAL 242 B VAL 241 1_555 H NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc7 B O VAL 245 B VAL 244 1_555 H NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc8 B O GLY 247 B GLY 246 1_555 H NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7T78 _atom_sites.fract_transf_matrix[1][1] 0.013094 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002399 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011947 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011965 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GLC A 1 501 500 GLC GLC . D 3 NA A 1 502 501 NA NA . E 4 G2T A 1 503 4000 G2T LIG . F 5 EDO A 1 504 2 EDO EDO . G 2 GLC B 1 501 500 GLC GLC . H 3 NA B 1 502 501 NA NA . I 4 G2T B 1 503 4000 G2T LIG . J 6 HOH A 1 601 6 HOH HOH . J 6 HOH A 2 602 166 HOH HOH . J 6 HOH A 3 603 78 HOH HOH . J 6 HOH A 4 604 175 HOH HOH . J 6 HOH A 5 605 77 HOH HOH . J 6 HOH A 6 606 5 HOH HOH . J 6 HOH A 7 607 72 HOH HOH . J 6 HOH A 8 608 11 HOH HOH . J 6 HOH A 9 609 14 HOH HOH . J 6 HOH A 10 610 22 HOH HOH . J 6 HOH A 11 611 49 HOH HOH . J 6 HOH A 12 612 18 HOH HOH . J 6 HOH A 13 613 39 HOH HOH . J 6 HOH A 14 614 60 HOH HOH . J 6 HOH A 15 615 9 HOH HOH . J 6 HOH A 16 616 46 HOH HOH . J 6 HOH A 17 617 35 HOH HOH . J 6 HOH A 18 618 57 HOH HOH . J 6 HOH A 19 619 38 HOH HOH . J 6 HOH A 20 620 30 HOH HOH . J 6 HOH A 21 621 23 HOH HOH . J 6 HOH A 22 622 25 HOH HOH . J 6 HOH A 23 623 64 HOH HOH . J 6 HOH A 24 624 65 HOH HOH . J 6 HOH A 25 625 200 HOH HOH . J 6 HOH A 26 626 8 HOH HOH . J 6 HOH A 27 627 12 HOH HOH . J 6 HOH A 28 628 68 HOH HOH . J 6 HOH A 29 629 32 HOH HOH . J 6 HOH A 30 630 56 HOH HOH . J 6 HOH A 31 631 67 HOH HOH . J 6 HOH A 32 632 4 HOH HOH . J 6 HOH A 33 633 176 HOH HOH . J 6 HOH A 34 634 40 HOH HOH . J 6 HOH A 35 635 44 HOH HOH . J 6 HOH A 36 636 13 HOH HOH . J 6 HOH A 37 637 16 HOH HOH . J 6 HOH A 38 638 19 HOH HOH . J 6 HOH A 39 639 58 HOH HOH . J 6 HOH A 40 640 62 HOH HOH . J 6 HOH A 41 641 220 HOH HOH . J 6 HOH A 42 642 70 HOH HOH . J 6 HOH A 43 643 190 HOH HOH . J 6 HOH A 44 644 17 HOH HOH . J 6 HOH A 45 645 191 HOH HOH . J 6 HOH A 46 646 193 HOH HOH . J 6 HOH A 47 647 41 HOH HOH . J 6 HOH A 48 648 169 HOH HOH . J 6 HOH A 49 649 74 HOH HOH . J 6 HOH A 50 650 194 HOH HOH . J 6 HOH A 51 651 189 HOH HOH . J 6 HOH A 52 652 43 HOH HOH . J 6 HOH A 53 653 34 HOH HOH . J 6 HOH A 54 654 10 HOH HOH . J 6 HOH A 55 655 20 HOH HOH . J 6 HOH A 56 656 179 HOH HOH . J 6 HOH A 57 657 59 HOH HOH . J 6 HOH A 58 658 47 HOH HOH . J 6 HOH A 59 659 188 HOH HOH . J 6 HOH A 60 660 21 HOH HOH . J 6 HOH A 61 661 29 HOH HOH . J 6 HOH A 62 662 198 HOH HOH . J 6 HOH A 63 663 50 HOH HOH . J 6 HOH A 64 664 2 HOH HOH . J 6 HOH A 65 665 76 HOH HOH . J 6 HOH A 66 666 79 HOH HOH . J 6 HOH A 67 667 45 HOH HOH . J 6 HOH A 68 668 71 HOH HOH . J 6 HOH A 69 669 53 HOH HOH . J 6 HOH A 70 670 63 HOH HOH . J 6 HOH A 71 671 69 HOH HOH . J 6 HOH A 72 672 195 HOH HOH . J 6 HOH A 73 673 55 HOH HOH . J 6 HOH A 74 674 48 HOH HOH . J 6 HOH A 75 675 196 HOH HOH . J 6 HOH A 76 676 61 HOH HOH . J 6 HOH A 77 677 28 HOH HOH . J 6 HOH A 78 678 52 HOH HOH . J 6 HOH A 79 679 33 HOH HOH . J 6 HOH A 80 680 75 HOH HOH . J 6 HOH A 81 681 199 HOH HOH . J 6 HOH A 82 682 174 HOH HOH . J 6 HOH A 83 683 73 HOH HOH . J 6 HOH A 84 684 1 HOH HOH . J 6 HOH A 85 685 3 HOH HOH . J 6 HOH A 86 686 201 HOH HOH . J 6 HOH A 87 687 66 HOH HOH . J 6 HOH A 88 688 15 HOH HOH . K 6 HOH B 1 601 99 HOH HOH . K 6 HOH B 2 602 132 HOH HOH . K 6 HOH B 3 603 133 HOH HOH . K 6 HOH B 4 604 223 HOH HOH . K 6 HOH B 5 605 80 HOH HOH . K 6 HOH B 6 606 135 HOH HOH . K 6 HOH B 7 607 112 HOH HOH . K 6 HOH B 8 608 93 HOH HOH . K 6 HOH B 9 609 104 HOH HOH . K 6 HOH B 10 610 126 HOH HOH . K 6 HOH B 11 611 108 HOH HOH . K 6 HOH B 12 612 87 HOH HOH . K 6 HOH B 13 613 36 HOH HOH . K 6 HOH B 14 614 84 HOH HOH . K 6 HOH B 15 615 154 HOH HOH . K 6 HOH B 16 616 37 HOH HOH . K 6 HOH B 17 617 161 HOH HOH . K 6 HOH B 18 618 92 HOH HOH . K 6 HOH B 19 619 27 HOH HOH . K 6 HOH B 20 620 85 HOH HOH . K 6 HOH B 21 621 204 HOH HOH . K 6 HOH B 22 622 142 HOH HOH . K 6 HOH B 23 623 143 HOH HOH . K 6 HOH B 24 624 134 HOH HOH . K 6 HOH B 25 625 187 HOH HOH . K 6 HOH B 26 626 98 HOH HOH . K 6 HOH B 27 627 149 HOH HOH . K 6 HOH B 28 628 86 HOH HOH . K 6 HOH B 29 629 91 HOH HOH . K 6 HOH B 30 630 102 HOH HOH . K 6 HOH B 31 631 7 HOH HOH . K 6 HOH B 32 632 95 HOH HOH . K 6 HOH B 33 633 157 HOH HOH . K 6 HOH B 34 634 144 HOH HOH . K 6 HOH B 35 635 215 HOH HOH . K 6 HOH B 36 636 153 HOH HOH . K 6 HOH B 37 637 129 HOH HOH . K 6 HOH B 38 638 121 HOH HOH . K 6 HOH B 39 639 181 HOH HOH . K 6 HOH B 40 640 151 HOH HOH . K 6 HOH B 41 641 210 HOH HOH . K 6 HOH B 42 642 105 HOH HOH . K 6 HOH B 43 643 148 HOH HOH . K 6 HOH B 44 644 115 HOH HOH . K 6 HOH B 45 645 222 HOH HOH . K 6 HOH B 46 646 109 HOH HOH . K 6 HOH B 47 647 96 HOH HOH . K 6 HOH B 48 648 184 HOH HOH . K 6 HOH B 49 649 147 HOH HOH . K 6 HOH B 50 650 110 HOH HOH . K 6 HOH B 51 651 111 HOH HOH . K 6 HOH B 52 652 117 HOH HOH . K 6 HOH B 53 653 145 HOH HOH . K 6 HOH B 54 654 122 HOH HOH . K 6 HOH B 55 655 130 HOH HOH . K 6 HOH B 56 656 88 HOH HOH . K 6 HOH B 57 657 180 HOH HOH . K 6 HOH B 58 658 118 HOH HOH . K 6 HOH B 59 659 136 HOH HOH . K 6 HOH B 60 660 207 HOH HOH . K 6 HOH B 61 661 131 HOH HOH . K 6 HOH B 62 662 206 HOH HOH . K 6 HOH B 63 663 26 HOH HOH . K 6 HOH B 64 664 140 HOH HOH . K 6 HOH B 65 665 156 HOH HOH . K 6 HOH B 66 666 94 HOH HOH . K 6 HOH B 67 667 209 HOH HOH . K 6 HOH B 68 668 137 HOH HOH . K 6 HOH B 69 669 211 HOH HOH . K 6 HOH B 70 670 185 HOH HOH . K 6 HOH B 71 671 120 HOH HOH . K 6 HOH B 72 672 146 HOH HOH . K 6 HOH B 73 673 124 HOH HOH . K 6 HOH B 74 674 82 HOH HOH . K 6 HOH B 75 675 106 HOH HOH . K 6 HOH B 76 676 97 HOH HOH . K 6 HOH B 77 677 138 HOH HOH . K 6 HOH B 78 678 101 HOH HOH . K 6 HOH B 79 679 150 HOH HOH . K 6 HOH B 80 680 31 HOH HOH . K 6 HOH B 81 681 125 HOH HOH . K 6 HOH B 82 682 177 HOH HOH . K 6 HOH B 83 683 217 HOH HOH . K 6 HOH B 84 684 139 HOH HOH . K 6 HOH B 85 685 212 HOH HOH . K 6 HOH B 86 686 119 HOH HOH . K 6 HOH B 87 687 116 HOH HOH . K 6 HOH B 88 688 208 HOH HOH . K 6 HOH B 89 689 113 HOH HOH . K 6 HOH B 90 690 107 HOH HOH . K 6 HOH B 91 691 186 HOH HOH . K 6 HOH B 92 692 152 HOH HOH . K 6 HOH B 93 693 114 HOH HOH . K 6 HOH B 94 694 155 HOH HOH . K 6 HOH B 95 695 100 HOH HOH . K 6 HOH B 96 696 178 HOH HOH . K 6 HOH B 97 697 214 HOH HOH . K 6 HOH B 98 698 90 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 33.03 _atom_site.Cartn_y -27.601 _atom_site.Cartn_z 42.8 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 75.71 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 502 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 357 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #