data_7T85 # _model_server_result.job_id 9O1jmfzLnLB8wCuyJV2SWA _model_server_result.datetime_utc '2024-10-25 20:29:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7t85 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":305}' # _entry.id 7T85 # _exptl.entry_id 7T85 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7T85 _cell.length_a 39.979 _cell.length_b 56.66 _cell.length_c 89.479 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7T85 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 4 A MSE 1 1_555 A N SER 5 A SER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C ILE 8 A ILE 5 1_555 A N MSE 9 A MSE 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 A C MSE 9 A MSE 6 1_555 A N LEU 10 A LEU 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 A C ALA 29 A ALA 26 1_555 A N MSE 30 A MSE 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale5 A C MSE 30 A MSE 27 1_555 A N GLU 31 A GLU 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale6 A C LYS 74 A LYS 71 1_555 A N MSE 75 A MSE 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale7 A C MSE 75 A MSE 72 1_555 A N SER 76 A SER 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale8 A C LEU 90 A LEU 87 1_555 A N MSE 91 A MSE 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale9 A C MSE 91 A MSE 88 1_555 A N GLU 92 A GLU 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale10 A C VAL 140 A VAL 137 1_555 A N MSE 141 A MSE 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale11 A C MSE 141 A MSE 138 1_555 A N SER 142 A SER 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? metalc ? metalc1 A OE2 GLU 31 A GLU 28 1_555 G ZN ZN . A ZN 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.903 ? metalc ? metalc2 A OE2 GLU 79 A GLU 76 1_555 I ZN ZN . A ZN 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc3 A OD1 ASP 88 A ASP 85 1_555 H ZN ZN . A ZN 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.957 ? metalc ? metalc4 A OE2 GLU 92 A GLU 89 1_555 H ZN ZN . A ZN 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.843 ? metalc ? metalc5 A NE2 HIS 99 A HIS 96 1_555 G ZN ZN . A ZN 306 3_756 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc6 A OE1 GLU 106 A GLU 103 1_555 H ZN ZN . A ZN 307 3_746 ? ? ? ? ? ? ? ? ? ? ? ? 2.562 ? metalc ? metalc7 A OE2 GLU 106 A GLU 103 1_555 H ZN ZN . A ZN 307 3_746 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc8 A NE2 HIS 119 A HIS 116 1_555 I ZN ZN . A ZN 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc9 B O ACY . A ACY 301 1_555 G ZN ZN . A ZN 306 3_756 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? metalc ? metalc10 C O1 EDO . A EDO 302 1_555 I ZN ZN . A ZN 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc11 C O2 EDO . A EDO 302 1_555 I ZN ZN . A ZN 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc12 G ZN ZN . A ZN 306 1_555 J O HOH . A HOH 459 3_746 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc13 H ZN ZN . A ZN 307 1_555 J O HOH . A HOH 427 3_756 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? metalc ? metalc14 I ZN ZN . A ZN 308 1_555 J O HOH . A HOH 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 77 n n C1 C2 EDO sing 78 n n C1 H11 EDO sing 79 n n C1 H12 EDO sing 80 n n O1 HO1 EDO sing 81 n n C2 O2 EDO sing 82 n n C2 H21 EDO sing 83 n n C2 H22 EDO sing 84 n n O2 HO2 EDO sing 85 n n # _atom_sites.entry_id 7T85 _atom_sites.fract_transf_matrix[1][1] 0.025013 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017649 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011176 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACY A 1 301 305 ACY ACY . C 3 EDO A 1 302 306 EDO EDO . D 3 EDO A 1 303 307 EDO EDO . E 2 ACY A 1 304 308 ACY ACY . F 3 EDO A 1 305 309 EDO EDO . G 4 ZN A 1 306 1 ZN ZN . H 4 ZN A 1 307 2 ZN ZN . I 4 ZN A 1 308 3 ZN ZN . J 5 HOH A 1 401 34 HOH HOH . J 5 HOH A 2 402 27 HOH HOH . J 5 HOH A 3 403 18 HOH HOH . J 5 HOH A 4 404 61 HOH HOH . J 5 HOH A 5 405 3 HOH HOH . J 5 HOH A 6 406 15 HOH HOH . J 5 HOH A 7 407 62 HOH HOH . J 5 HOH A 8 408 32 HOH HOH . J 5 HOH A 9 409 37 HOH HOH . J 5 HOH A 10 410 9 HOH HOH . J 5 HOH A 11 411 39 HOH HOH . J 5 HOH A 12 412 55 HOH HOH . J 5 HOH A 13 413 26 HOH HOH . J 5 HOH A 14 414 24 HOH HOH . J 5 HOH A 15 415 21 HOH HOH . J 5 HOH A 16 416 4 HOH HOH . J 5 HOH A 17 417 44 HOH HOH . J 5 HOH A 18 418 13 HOH HOH . J 5 HOH A 19 419 20 HOH HOH . J 5 HOH A 20 420 10 HOH HOH . J 5 HOH A 21 421 8 HOH HOH . J 5 HOH A 22 422 14 HOH HOH . J 5 HOH A 23 423 29 HOH HOH . J 5 HOH A 24 424 50 HOH HOH . J 5 HOH A 25 425 59 HOH HOH . J 5 HOH A 26 426 11 HOH HOH . J 5 HOH A 27 427 23 HOH HOH . J 5 HOH A 28 428 17 HOH HOH . J 5 HOH A 29 429 5 HOH HOH . J 5 HOH A 30 430 2 HOH HOH . J 5 HOH A 31 431 35 HOH HOH . J 5 HOH A 32 432 63 HOH HOH . J 5 HOH A 33 433 43 HOH HOH . J 5 HOH A 34 434 42 HOH HOH . J 5 HOH A 35 435 51 HOH HOH . J 5 HOH A 36 436 7 HOH HOH . J 5 HOH A 37 437 12 HOH HOH . J 5 HOH A 38 438 22 HOH HOH . J 5 HOH A 39 439 33 HOH HOH . J 5 HOH A 40 440 49 HOH HOH . J 5 HOH A 41 441 40 HOH HOH . J 5 HOH A 42 442 47 HOH HOH . J 5 HOH A 43 443 41 HOH HOH . J 5 HOH A 44 444 52 HOH HOH . J 5 HOH A 45 445 25 HOH HOH . J 5 HOH A 46 446 31 HOH HOH . J 5 HOH A 47 447 6 HOH HOH . J 5 HOH A 48 448 38 HOH HOH . J 5 HOH A 49 449 48 HOH HOH . J 5 HOH A 50 450 53 HOH HOH . J 5 HOH A 51 451 56 HOH HOH . J 5 HOH A 52 452 45 HOH HOH . J 5 HOH A 53 453 46 HOH HOH . J 5 HOH A 54 454 19 HOH HOH . J 5 HOH A 55 455 36 HOH HOH . J 5 HOH A 56 456 57 HOH HOH . J 5 HOH A 57 457 30 HOH HOH . J 5 HOH A 58 458 64 HOH HOH . J 5 HOH A 59 459 28 HOH HOH . J 5 HOH A 60 460 65 HOH HOH . J 5 HOH A 61 461 58 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 3 45.661 25.966 75.394 1 57.49 ? C1 EDO 305 A 1 HETATM 2 O O1 EDO . . . F 3 46.477 26.519 76.434 1 65.47 ? O1 EDO 305 A 1 HETATM 3 C C2 EDO . . . F 3 45.7 24.443 75.475 1 53.23 ? C2 EDO 305 A 1 HETATM 4 O O2 EDO . . . F 3 45.559 23.892 74.157 1 47.45 ? O2 EDO 305 A 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #